Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Reverse (-)

38969106 .. 38970702

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCTCGGTGGCATCATGCATTGGCACTTGCAATCCCAGAAAGCTCAGAACACTCGGTACTCTACCATCGAAGGATTTCAATCCACCTGAAACGTCAAGAATAAAAATCTTAAGCCAGGCCCAGAAAAGCTCACCTTCTTCTGGACAGGTTCTGCAGCTAAATAATGAGAAGCCAAGTTTATTAAGGAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTTGGCCTTGTTGATGTGCTCTTGCCAGGTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTTGCTTTCTGTGACAAAGTAGTAGGGAAGGGAGCTGAGGCTGTTAAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTACATTCCGAATTGGTGCTGGTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

155

Amino Acids

16.52

Weight (kDa)

9.35

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	115 - 155	5.6e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	279, 288
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	143
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	117, 244
AluBI	AGCT	8 cut(s)	6, 46, 132, 160, 266, 296, 341, 417
AluI	AGCT	8 cut(s)	6, 46, 132, 160, 266, 296, 341, 417
Alw21I	GWGCWC	2 cut(s)	8, 240
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	120, 223
ApeKI	GCWGC	2 cut(s)	157, 263
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 240
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	169, 275
BccI	CCATC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	2 cut(s)	119, 246
BfmI	CTRYAG	2 cut(s)	155, 291
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	158, 264
BlsI	GCNGC	2 cut(s)	159, 265
Bme1390I	CCNGG	2 cut(s)	119, 246
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	119, 246
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	119, 246
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	2 cut(s)	61, 333
BseNI	ACTGG	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	169, 275
BshFI	GGCC	2 cut(s)	122, 225
BsiHKAI	GWGCWC	2 cut(s)	8, 240
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	122, 225
Bsp1286I	GDGCHC	2 cut(s)	8, 240
BspANI	GGCC	2 cut(s)	122, 225
BspCNI	CTCAG	2 cut(s)	60, 334
BspMAI	CTGCAG	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	119, 246
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	47, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	119, 246
BstSCI	CCNGG	2 cut(s)	117, 244
BstSFI	CTRYAG	2 cut(s)	155, 291
BstV1I	GCAGC	2 cut(s)	169, 275
BsuRI	GGCC	2 cut(s)	122, 225
BtsIMutI	CAGTG	2 cut(s)	255, 378
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	47, 342
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	279, 288
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	117, 244
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	21
FaiI	YATR	3 cut(s)	19, 420, 466
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	158, 264
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	158, 264
GluI	GCNGC	2 cut(s)	158, 264
HaeIII	GGCC	2 cut(s)	122, 225
Hin1II	CATG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	50, 446
Hpy188III	TCNNGA	3 cut(s)	99, 144, 303
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	67, 147, 309, 328
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	21, 33, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	47, 342
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	280, 301, 338
Lsp1109I	GCAGC	2 cut(s)	169, 275
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	132, 204
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	8, 240
MluCI	AATT	4 cut(s)	201, 284, 386, 447
MnlI	CCTC	2 cut(s)	337, 454
Mph1103I	ATGCAT	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	4 cut(s)	113, 185, 351, 366
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	119, 246
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	119, 246
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	159, 265
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	117, 244
PspGI	CCWGG	2 cut(s)	117, 244
PspPI	GGNCC	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	113, 185, 351, 366
SatI	GCNGC	2 cut(s)	158, 264
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	119, 246
SduI	GDGCHC	2 cut(s)	8, 240
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	155, 291
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	4 cut(s)	201, 284, 386, 447
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	117, 244
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	71, 408
TasI	AATT	4 cut(s)	201, 284, 386, 447
Tru1I	TTAA	4 cut(s)	113, 185, 351, 366
Tru9I	TTAA	4 cut(s)	113, 185, 351, 366
TscAI	CASTG	2 cut(s)	262, 385
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	157, 263
Tsp45I	GTSAC	1 cut(s)	317
TspRI	CASTG	2 cut(s)	262, 385
Vha464I	CTTAAG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.