Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Forward (+)

79102442 .. 79104158

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGCTCGGTGGCATCTTCCCTTGGCACTTGCAATCCCAGAAAGCTCAGAACATTCAGTACTCTACCACCACAGAAGGATTTCAATGCCCCTAAAACCTCAAGAATCAAAATCTTAAGCCAGGCCCAGAAAAGCTCAGCTTCTTCTGAACACGTTCTGCAGCTAAATAATGAGAAGCCAAGTTTATTGAGGAGAAGAGATGCAATTGGTTTTGGCTTCTGCTTTGGCCTTGTTGATGTGCTCTTGCCAGCTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTTGCTTTCTGTGACAAAGTAGTAGGGAAGGGAGCTGAAGCTGTTAAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTTCATTCCGAATTGGGGCTGGTGAGGTAATTAAAGGGTGGGACCAAGGTATTCTTGGTGGCGATGGAATTCCTCCCATGCTTGCTGGGGGAAAGCGCACCTTGAAGATCCCTGCAGAACTTGCATATGGTGCACGAGGAGCTGGGTGTAGAGGAGGTTCGTGTATTATTCCTCCATATTCAGTTCTTTTGTTCGATGTGGAATTCATTGGCAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

219

Amino Acids

23.17

Weight (kDa)

9.44

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	116 - 215	2.8e-29	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	3 cut(s)	287, 507, 641
AcuI	CTGAAG	3 cut(s)	282, 291, 366
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	85, 544
AjnI	CCWGG	1 cut(s)	120
Alw21I	GWGCWC	3 cut(s)	8, 243, 574
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	2 cut(s)	123, 226
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	160, 266
ApoI	RAATTY	3 cut(s)	287, 507, 641
Asp700I	GAANNNNTTC	2 cut(s)	80, 153
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	124, 481
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	573
Bbv12I	GWGCWC	3 cut(s)	8, 243, 574
BbvI	GCAGC	2 cut(s)	172, 278
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	1 cut(s)	122
BfmI	CTRYAG	3 cut(s)	158, 294, 552
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	2 cut(s)	161, 267
BlpI	GCTNAGC	1 cut(s)	136
BlsI	GCNGC	2 cut(s)	162, 268
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	124, 481
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	23, 190
BmuI	ACTGGG	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	22, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	22, 484
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	2 cut(s)	61, 150
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	3 cut(s)	205, 591, 606
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	172, 278
BseYI	CCCAGC	2 cut(s)	524, 581
BshFI	GGCC	2 cut(s)	125, 228
BsiHKAI	GWGCWC	3 cut(s)	8, 243, 574
BslFI	GGGAC	2 cut(s)	372, 494
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	372, 494
BsnI	GGCC	2 cut(s)	125, 228
Bsp1286I	GDGCHC	3 cut(s)	8, 243, 574
Bsp143I	GATC	1 cut(s)	546
Bsp1720I	GCTNAGC	1 cut(s)	136
BspANI	GGCC	2 cut(s)	125, 228
BspCNI	CTCAG	2 cut(s)	60, 149
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	2 cut(s)	162, 556
BspPI	GGATC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	22, 484
BssMI	GATC	1 cut(s)	546
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	22, 484
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	190
BstAFI	CTTAAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	2 cut(s)	560, 569
BstC8I	GCNNGC	2 cut(s)	249, 522
BstDEI	CTNAG	2 cut(s)	47, 136
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	1 cut(s)	549
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 560, 569, 578
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	3 cut(s)	158, 294, 552
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	172, 278
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
BsuRI	GGCC	2 cut(s)	125, 228
BtgZI	GCGATG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	258, 381
Cac8I	GCNNGC	2 cut(s)	249, 522
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	2 cut(s)	124, 481
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	2 cut(s)	517, 657
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	47, 136
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	22, 484
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	3 cut(s)	282, 291, 366
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	507, 641
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	22, 484
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	22, 484
FaeI	CATG	2 cut(s)	520, 660
FaiI	YATR	6 cut(s)	423, 518, 565, 567, 616, 658
FalI	AAGNNNNNCTT	6 cut(s)	124, 156, 477, 509, 524, 556
FaqI	GGGAC	2 cut(s)	372, 494
FatI	CATG	2 cut(s)	516, 656
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	161, 267
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	161, 267
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	2 cut(s)	161, 267
GsaI	CCCAGC	2 cut(s)	528, 585
HaeIII	GGCC	2 cut(s)	125, 228
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	2 cut(s)	520, 660
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HinfI	GANTC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	50, 148, 449
Hpy188III	TCNNGA	2 cut(s)	102, 306
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	3 cut(s)	70, 312, 331
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	6 cut(s)	33, 160, 203, 554, 563, 572
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 560, 569, 578
HpyF3I	CTNAG	2 cut(s)	47, 136
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	520, 660
HspAI	GCGC	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	4 cut(s)	283, 304, 341, 578
Lsp1109I	GCAGC	2 cut(s)	172, 278
LweI	GCATC	2 cut(s)	23, 190
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	4 cut(s)	9, 135, 207, 556
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	3 cut(s)	8, 243, 574
MluCI	AATT	7 cut(s)	204, 287, 389, 450, 468, 507, 641
MnlI	CCTC	8 cut(s)	109, 183, 457, 522, 569, 584, 587, 621
MroXI	GAANNNNTTC	2 cut(s)	80, 153
MseI	TTAA	4 cut(s)	116, 354, 369, 471
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	275, 560, 569, 578
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	2 cut(s)	520, 660
NlaIV	GGNNCC	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	320
PdmI	GAANNNNTTC	2 cut(s)	80, 153
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	162, 268
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	2 cut(s)	524, 581
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	124, 481
PsrI	GAACNNNNNNTAC	4 cut(s)	43, 75, 580, 612
PstI	CTGCAG	2 cut(s)	162, 556
PsuI	RGATCY	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	4 cut(s)	116, 354, 369, 471
SatI	GCNGC	2 cut(s)	161, 267
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	2 cut(s)	124, 481
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	3 cut(s)	8, 243, 574
SfaNI	GCATC	2 cut(s)	23, 190
SfcI	CTRYAG	3 cut(s)	158, 294, 552
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	2 cut(s)	100, 115
SmoI	CTYRAG	2 cut(s)	100, 115
Sse9I	AATT	7 cut(s)	204, 287, 389, 450, 468, 507, 641
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	22, 484
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	411, 633
TasI	AATT	7 cut(s)	204, 287, 389, 450, 468, 507, 641
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	4 cut(s)	116, 354, 369, 471
Tru9I	TTAA	4 cut(s)	116, 354, 369, 471
TscAI	CASTG	2 cut(s)	265, 388
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	160, 266
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	432, 634
TspRI	CASTG	2 cut(s)	265, 388
Vha464I	CTTAAG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	3 cut(s)	287, 507, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	80, 153
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.