Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002052.1

Orthogroup ID

OG0007804

Physical Location & Seq

Genomic Coordinates Reverse (-)

42568 .. 44021

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002052.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgaggtcggtggcatcttcccttggcacttgcaaatgcaatcccagaaagctcagaacattcagtactctaccactgaaggatttcagtgcccctaaaacctcaagaatcaaaatcttaagccaggcccagaaaagctcaccttcttctgaacatgttctgcagctaaataatgagaagccaagtttatcaaggagaagagaagcaattggttttggcttctgctttggccttgttgaagtgctcttaccaggtcaacccactgaagcagctgaagttgctccttgtgaatttactgtagctccttctggactagctttctgtgataaagtagtgggatatggagctgaggctgttaagggacagatgattaaggcacactacactgggaaattggagaatggcaaggtgttcgatagtagctataatcgtgggaagccccttacattccgaattggtgctggtgaggtaattaaagggtgggaccaaggtattcttggtggcgatggaattcctcccatgcttgctgggcgaaagcgcaccttgaagatccctacagaacttgcgtatggtgcacggggagctgggtgtagaggaggttcatgtattattcctccgtattcagttcttttgttcgatgtggaattcattgacaaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

220

Amino Acids

23.58

Weight (kDa)

9.45

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45680
fragaria_vesca	FvH4_3g13210
malus_domestica	MD05G1244300.v1.1
prunus_persica	Prupe.4G119400_v2.0.a1
pyrus_communis	pycom05g22070
rosa_chinensis	RchiOBHm_Chr5g0021551 RchiOBHm_Chr7g0219431
rosa_laevigata	RLG00000032614
rosa_multiflora	Rmu_sc0002052.1_g000013 Rmu_sc0002460.1_g000022 Rmu_sc0003767.1_g000013 Rmu_sc0023070.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057100
rosa_rugosa	Rorug07G0185000 Rorug07G0185100
rosa_samantha	Rh5AG156500 Rh5CG170200 Rh5DG156400 Rh7AG327900 Rh7BG317900 Rh7CG345300 Rh7DG323300
rosa_wichuraiana	Rw7G027660 Rw7G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	3 cut(s)	290, 510, 644
AcuI	CTGAAG	3 cut(s)	98, 285, 294
AfaI	GTAC	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	118
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	239, 547
AjnI	CCWGG	2 cut(s)	123, 250
AluBI	AGCT	9 cut(s)	52, 138, 166, 272, 302, 317, 347, 423, 584
AluI	AGCT	9 cut(s)	52, 138, 166, 272, 302, 317, 347, 423, 584
Alw21I	GWGCWC	2 cut(s)	246, 577
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	1 cut(s)	544
AoxI	GGCC	2 cut(s)	126, 229
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	2 cut(s)	163, 269
ApoI	RAATTY	3 cut(s)	290, 510, 644
Asp700I	GAANNNNTTC	2 cut(s)	83, 156
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	127, 484
AsuHPI	GGTGA	2 cut(s)	132, 476
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	2 cut(s)	94, 577
BarI	GAAGNNNNNNTAC	2 cut(s)	231, 263
Bbv12I	GWGCWC	2 cut(s)	246, 577
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	175, 281
BccI	CCATC	1 cut(s)	500
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	2 cut(s)	125, 252
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	3 cut(s)	161, 297, 555
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	2 cut(s)	164, 270
BlsI	GCNGC	2 cut(s)	165, 271
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	125, 252
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	127, 484
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	125, 252
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	23
BmuI	ACTGGG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	22, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	125, 252
BseDI	CCNNGG	2 cut(s)	22, 487
BseMII	CTCAG	2 cut(s)	67, 339
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	1 cut(s)	609
BseSI	GKGCMC	2 cut(s)	94, 577
BseXI	GCAGC	2 cut(s)	175, 281
BseYI	CCCAGC	2 cut(s)	527, 584
BshFI	GGCC	2 cut(s)	128, 231
BsiHKAI	GWGCWC	2 cut(s)	246, 577
BslFI	GGGAC	2 cut(s)	375, 497
BsmFI	GGGAC	2 cut(s)	375, 497
BsnI	GGCC	2 cut(s)	128, 231
Bsp1286I	GDGCHC	3 cut(s)	94, 246, 577
Bsp143I	GATC	1 cut(s)	549
BspANI	GGCC	2 cut(s)	128, 231
BspCNI	CTCAG	2 cut(s)	66, 340
BspLI	GGNNCC	1 cut(s)	485
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	22, 487
BssMI	GATC	1 cut(s)	549
BssT1I	CCWWGG	2 cut(s)	22, 487
Bst2UI	CCWGG	2 cut(s)	125, 252
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	53, 348
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 529, 572, 581
BstNI	CCWGG	2 cut(s)	125, 252
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	123, 250
BstSFI	CTRYAG	3 cut(s)	161, 297, 555
BstSLI	GKGCMC	2 cut(s)	94, 577
BstV1I	GCAGC	2 cut(s)	175, 281
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	128, 231
BtgZI	GCGATG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	74, 94, 261, 384
Cac8I	GCNNGC	1 cut(s)	525
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	127, 484
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	4 cut(s)	155, 520, 603, 660
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	2 cut(s)	53, 348
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	22, 487
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	98, 285, 294
EcoRI	GAATTC	2 cut(s)	510, 644
EcoRII	CCWGG	2 cut(s)	123, 250
EcoT14I	CCWWGG	2 cut(s)	22, 487
ErhI	CCWWGG	2 cut(s)	22, 487
FaeI	CATG	4 cut(s)	158, 523, 606, 663
FaiI	YATR	7 cut(s)	156, 342, 426, 521, 570, 604, 661
FalI	AAGNNNNNCTT	6 cut(s)	127, 159, 480, 512, 527, 559
FaqI	GGGAC	2 cut(s)	375, 497
FatI	CATG	4 cut(s)	154, 519, 602, 659
Fnu4HI	GCNGC	2 cut(s)	164, 270
Fsp4HI	GCNGC	2 cut(s)	164, 270
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	2 cut(s)	164, 270
GsaI	CCCAGC	2 cut(s)	531, 588
HaeIII	GGCC	2 cut(s)	128, 231
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	158, 523, 606, 663
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	2 cut(s)	132, 476
Hpy166II	GTNNAC	2 cut(s)	257, 575
Hpy188I	TCNGA	3 cut(s)	56, 151, 452
Hpy188III	TCNNGA	2 cut(s)	105, 309
Hpy8I	GTNNAC	2 cut(s)	257, 575
HpyAV	CCTTC	3 cut(s)	73, 153, 315
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	33, 39, 163, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 529, 572, 581
HpyF3I	CTNAG	2 cut(s)	53, 348
Hsp92II	CATG	4 cut(s)	158, 523, 606, 663
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	4 cut(s)	286, 307, 344, 581
Lsp1109I	GCAGC	2 cut(s)	175, 281
LweI	GCATC	1 cut(s)	23
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	1 cut(s)	314
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	4 cut(s)	9, 138, 210, 559
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	3 cut(s)	94, 246, 577
MluCI	AATT	7 cut(s)	207, 290, 392, 453, 471, 510, 644
MnlI	CCTC	7 cut(s)	112, 343, 460, 525, 587, 590, 624
MroXI	GAANNNNTTC	2 cut(s)	83, 156
MseI	TTAA	4 cut(s)	119, 357, 372, 474
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	125, 252
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	125, 252
MwoI	GCNNNNNNNGC	4 cut(s)	278, 529, 572, 581
NdeII	GATC	1 cut(s)	549
NlaIII	CATG	4 cut(s)	158, 523, 606, 663
NlaIV	GGNNCC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PdmI	GAANNNNTTC	2 cut(s)	83, 156
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	165, 271
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	123, 250
PspFI	CCCAGC	2 cut(s)	527, 584
PspGI	CCWGG	2 cut(s)	123, 250
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	127, 484
PsrI	GAACNNNNNNTAC	4 cut(s)	49, 81, 583, 615
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	549
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	119, 357, 372, 474
SatI	GCNGC	2 cut(s)	164, 270
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	2 cut(s)	127, 484
ScaI	AGTACT	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	125, 252
SduI	GDGCHC	3 cut(s)	94, 246, 577
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	3 cut(s)	161, 297, 555
SinI	GGWCC	1 cut(s)	484
SmlI	CTYRAG	2 cut(s)	103, 118
SmoI	CTYRAG	2 cut(s)	103, 118
Sse9I	AATT	7 cut(s)	207, 290, 392, 453, 471, 510, 644
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	123, 250
StyI	CCWWGG	2 cut(s)	22, 487
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	414, 636
TasI	AATT	7 cut(s)	207, 290, 392, 453, 471, 510, 644
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	4 cut(s)	119, 357, 372, 474
Tru9I	TTAA	4 cut(s)	119, 357, 372, 474
TscAI	CASTG	4 cut(s)	81, 94, 268, 391
TseI	GCWGC	2 cut(s)	163, 269
TspDTI	ATGAA	2 cut(s)	591, 637
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	4 cut(s)	81, 94, 268, 391
Vha464I	CTTAAG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	3 cut(s)	290, 510, 644
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	83, 156
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.