Rw7G027660

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007804
Physical Location & Seq
Reverse (-)
36175020 .. 36176449
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027660.1

Sequence Viewer

Length: 561 bp
ATGAGAGCTCGGTGGCATCTTGCATTGGCACTTGCAATCCCAGAAAGCTCAGAACACTCGGTACTCTACCATCGAAGGACTTCAATGCACCTGAACGTCAAGAATAAAAATCTTAAGCCAGGCCCAGAAAAGCTCACCTTCTTCTGGACAGGTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTTGCTTTCTGTGACAAAGTAGTAGGGAAGGGAGCTGAGGCTGTTAAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTACATTCCGAATTGGTGCTGGTGAGGTAATCAAAGGGTGGGACCAAGGTATTCTTGGTGGCGATGGAATTCCTCCCATGCTTGCTGGGGGAAAGCGCACCTTGAAGATCCCTGCAGAACTTGCATATGGTGCACGGGGAGCTGGGTGTAGAGGAGGTTCGTGTATTATTCCTCCATATTCCGTTCTTTTGTTTGATGTGGAATTCATTGGCAAGGTATGA

Protein Analysis

186

Amino Acids

20.01

Weight (kDa)

9.41

Isoelectric Point (pI)

29.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 83 - 182 1.4e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 442
AcsI RAATTY 3 cut(s) 188, 408, 542
AcuI CTGAAG 2 cut(s) 183, 192
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 84, 445
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 8 cut(s) 8, 48, 133, 170, 200, 245, 321, 482
AluI AGCT 8 cut(s) 8, 48, 133, 170, 200, 245, 321, 482
Alw21I GWGCWC 2 cut(s) 10, 475
Alw44I GTGCAC 1 cut(s) 471
AlwI GGATC 1 cut(s) 442
AoxI GGCC 1 cut(s) 121
ApaLI GTGCAC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 3 cut(s) 188, 408, 542
Asp700I GAANNNNTTC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 122, 382
AsuHPI GGTGA 2 cut(s) 127, 374
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 10
Bbv12I GWGCWC 2 cut(s) 10, 475
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 78, 398
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 195, 453
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 122, 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 63, 237
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 1 cut(s) 179
BseYI CCCAGC 2 cut(s) 425, 482
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 10, 475
BslFI GGGAC 2 cut(s) 273, 395
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 273, 395
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 10, 475
Bsp143I GATC 1 cut(s) 447
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 62, 238
BspLI GGNNCC 1 cut(s) 383
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 442
BspTI CTTAAG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 196
BstAFI CTTAAG 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 461, 470
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 49, 246
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 1 cut(s) 450
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 4 cut(s) 176, 461, 470, 479
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 2 cut(s) 195, 453
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
BsuRI GGCC 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 417
BtsIMutI CAGTG 2 cut(s) 159, 282
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 122, 382
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 2 cut(s) 49, 246
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 2 cut(s) 183, 192
EcoICRI GAGCTC 1 cut(s) 8
EcoRI GAATTC 2 cut(s) 408, 542
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 421
FaiI YATR 6 cut(s) 324, 419, 466, 468, 517, 559
FalI AAGNNNNNCTT 6 cut(s) 122, 154, 378, 410, 425, 457
FaqI GGGAC 2 cut(s) 273, 395
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 437
GluI GCNGC 1 cut(s) 168
GsaI CCCAGC 2 cut(s) 429, 486
HaeIII GGCC 1 cut(s) 123
HhaI GCGC 1 cut(s) 438
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HphI GGTGA 2 cut(s) 127, 374
Hpy166II GTNNAC 2 cut(s) 155, 473
Hpy188I TCNGA 2 cut(s) 52, 350
Hpy188III TCNNGA 3 cut(s) 100, 145, 207
Hpy8I GTNNAC 2 cut(s) 155, 473
HpyAV CCTTC 4 cut(s) 69, 148, 213, 232
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 6 cut(s) 23, 35, 88, 455, 464, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 461, 470, 479
HpyF3I CTNAG 2 cut(s) 49, 246
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 1 cut(s) 447
LmnI GCTCC 4 cut(s) 184, 205, 242, 479
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 2 cut(s) 133, 457
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 10, 475
MluCI AATT 5 cut(s) 188, 290, 351, 408, 542
MnlI CCTC 6 cut(s) 241, 358, 423, 485, 488, 522
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 3 cut(s) 114, 255, 270
MspA1I CMGCKG 1 cut(s) 170
MspCI CTTAAG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 176, 461, 470, 479
NdeI CATATG 1 cut(s) 466
NdeII GATC 1 cut(s) 447
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 2 cut(s) 425, 482
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 2 cut(s) 122, 382
PsrI GAACNNNNNNTAC 4 cut(s) 45, 77, 481, 513
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 447
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SacI GAGCTC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 114, 255, 270
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 2 cut(s) 122, 382
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 10, 475
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 2 cut(s) 195, 453
SinI GGWCC 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 5 cut(s) 188, 290, 351, 408, 542
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 73, 312
TasI AATT 5 cut(s) 188, 290, 351, 408, 542
Tru1I TTAA 3 cut(s) 114, 255, 270
Tru9I TTAA 3 cut(s) 114, 255, 270
TscAI CASTG 2 cut(s) 166, 289
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 535
TspGWI ACGGA 1 cut(s) 511
TspRI CASTG 2 cut(s) 166, 289
Vha464I CTTAAG 1 cut(s) 113
VneI GTGCAC 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 3 cut(s) 188, 408, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.