Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015822

Physical Location & Seq

Genomic Coordinates Reverse (-)

18586870 .. 18588792

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGATAAAAACGGCATAGTTTTGATGCGAAAATATGAATTAGGTCGTCTTCTAGGTCAAGGCACATTCGCAAAAGTGTACCACGCACGCAACATAAAAACAGGAGAAAGCGTAGCGATCAAGGTGATCGACAAACAGAAAGTTGCGAAAGTCGGATTAATCGATCAAATCAAACGAGAAATATCAGTGATGCGTCTCGTTCGTCACCCCCACGTCGTCTTCCTCCATGAAGTAATGGCGAGCAAGACAAAGATCTATTTCGCTATGGAATACGTTAAAGGCGGTGAGCTTTTTGATAAAGTCTCTAAAGGAAAGCTTAAAGAAAACATTGCTCGAAAATATTTCCAGCAATTGATCGGAGCAATCGATTATTGCCATAGCCGCGGAGTTTACCACCGCGATCTCAAACCGGAGAATCTTCTTCTAGACGAAAACGGCGATTTGAAAATATCGGATTTTGGCCTTAGCGCGTTGAGGGAGTCGAAGCAGCAAGATGGCTTGCTTCACACGACATGTGGAACACCTGCTTACGTGGCACCTGAAGTGATAGGCAAGAAAGGTTATGATGGAGCTAAAGCCGATGTTTGGTCTTGCGGGGTTGTGTTGTACGTGCTATTGGCTGGATTTCTTCCGTTTCACGAGCAAAATCTTGTGGAAATGTATCGGAAAATCACGAAAGGCGAATTCAAATGTCCGAATTGGTTTCCTCCCGAGGTCAAGAAGTTGTTGTCTCGGATTCTTGACCCTAACCCTAATTCAAGAATCAAGATTGAAAAAATCATGGAGAATTCCTGGTTTCAAAAGGGTTTCAAGAAGATCGAAACGCCTAAATCTCCCGAAAGTCATCAGATCGACTCACTGATCAGCGATGTCCACGCAGCTTTTTCCGTAAAACCGATGTCTTACAACGCGTTTGACTTGATCTCTTCGCTGTCTCAAGGATTCGATCTCTCGGGTTTGTTTGAGAAAGAAGAGAGATCAGAATCGAAGTTTACAACGAAGAAAGATGCAAAAGAGATAGTGTCGAAATTCGAGGAGATAGCAACAAGTAGTGAGAGATTCAATTTGACGAAGAGCGATGTAGGAGTGAAGATGGAAGATAAGAGAGAAGGAAGAAAAGGACATCTTGCGATTGATGTTGAGATATTTGAAGTGACAAATAGTTTTCATATGGTTGAGTTTAAGAAAAGTGGAGGTGATACAATGGAGTATAAGCAATTTTGTGATCGTGAGCTTAGGCCTTCTTTGAAAGATATTGTTTGGAAATGGCAAGGAAACAACAACAATAGCAACAATGAGAAGATTGAAGTGATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

439

Amino Acids

50.17

Weight (kDa)

9.04

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	8.8e-77	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	6.4e-42	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	103 - 254	4.9e-09	Kinase-like
NAF	PF03822	299 - 356	2.9e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45820
fragaria_vesca	FvH4_3g07630
malus_domestica	MD05G1298900.v1.1 MD10G1278400.v1.1
prunus_persica	Prupe.4G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011061
rosa_laevigata	RLG00000031806
rosa_multiflora	Rmu_sc0003242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00065350
rosa_rugosa	Rorug04G0454900
rosa_samantha	Rh5AG087000 Rh5BG081900 Rh5CG094700
rosa_wichuraiana	Rw0G000150 Rw0G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	535
AccII	CGCG	4 cut(s)	384, 399, 470, 911
AciI	CCGC	5 cut(s)	282, 382, 384, 397, 594
AcsI	RAATTY	3 cut(s)	683, 787, 1028
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	80, 608
AfiI	CCNNNNNNNGG	1 cut(s)	585
AflIII	ACRYGT	2 cut(s)	512, 909
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	791
AluBI	AGCT	5 cut(s)	289, 316, 572, 881, 1234
AluI	AGCT	5 cut(s)	289, 316, 572, 881, 1234
Alw26I	GTCTC	4 cut(s)	200, 307, 735, 939
Ama87I	CYCGRG	2 cut(s)	710, 952
AoxI	GGCC	2 cut(s)	460, 1238
ApeKI	GCWGC	2 cut(s)	487, 878
ApoI	RAATTY	3 cut(s)	683, 787, 1028
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	136, 197, 296, 1208
AvaI	CYCGRG	2 cut(s)	710, 952
BanI	GGYRCC	1 cut(s)	535
BauI	CACGAG	1 cut(s)	638
BbsI	GAAGAC	2 cut(s)	41, 211
BbvI	GCAGC	2 cut(s)	499, 890
BccI	CCATC	3 cut(s)	488, 560, 1087
BceAI	ACGGC	2 cut(s)	28, 451
BciT130I	CCWGG	1 cut(s)	793
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	4 cut(s)	200, 307, 735, 939
BfaI	CTAG	2 cut(s)	53, 425
BfuAI	ACCTGC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	382, 488, 879
BlsI	GCNGC	3 cut(s)	383, 489, 880
Bme1390I	CCNGG	1 cut(s)	793
BmeT110I	CYCGRG	2 cut(s)	710, 952
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	793
BmsI	GCATC	3 cut(s)	15, 180, 997
BpiI	GAAGAC	2 cut(s)	41, 211
Bpu10I	CCTNAGC	2 cut(s)	464, 1235
BpuEI	CTTGAG	1 cut(s)	921
Bsa29I	ATCGAT	2 cut(s)	162, 366
BsaAI	YACGTR	2 cut(s)	532, 610
BsaBI	GATNNNNATC	1 cut(s)	982
BsaJI	CCNNGG	2 cut(s)	382, 711
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	982
BseBI	CCWGG	1 cut(s)	793
BseCI	ATCGAT	2 cut(s)	162, 366
BseDI	CCNNGG	2 cut(s)	382, 711
BseJI	GATNNNNATC	1 cut(s)	982
BseLI	CCNNNNNNNGG	1 cut(s)	585
BseMI	GCAATG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	1049
BseXI	GCAGC	2 cut(s)	499, 890
Bsh1236I	CGCG	4 cut(s)	384, 399, 470, 911
BshFI	GGCC	2 cut(s)	462, 1240
BshNI	GGYRCC	1 cut(s)	535
BshVI	ATCGAT	2 cut(s)	162, 366
BsiHKCI	CYCGRG	2 cut(s)	710, 952
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	585
BsmAI	GTCTC	4 cut(s)	200, 307, 735, 939
BsmBI	CGTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	462, 1240
BsoBI	CYCGRG	2 cut(s)	710, 952
BspACI	CCGC	5 cut(s)	282, 382, 384, 397, 594
BspANI	GGCC	2 cut(s)	462, 1240
BspDI	ATCGAT	2 cut(s)	162, 366
BspFNI	CGCG	4 cut(s)	384, 399, 470, 911
BspLI	GGNNCC	1 cut(s)	537
BspMI	ACCTGC	1 cut(s)	532
BspQI	GCTCTTC	1 cut(s)	1067
BspT107I	GGYRCC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	382, 711
BssSI	CACGAG	1 cut(s)	638
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	793
Bst6I	CTCTTC	3 cut(s)	931, 966, 1067
BstBAI	YACGTR	2 cut(s)	532, 610
BstC8I	GCNNGC	3 cut(s)	88, 241, 500
BstDEI	CTNAG	2 cut(s)	464, 1235
BstDSI	CCRYGG	1 cut(s)	382
BstFNI	CGCG	4 cut(s)	384, 399, 470, 911
BstHHI	GCGC	1 cut(s)	470
BstMAI	GTCTC	4 cut(s)	200, 307, 735, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 533
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	791
BstUI	CGCG	4 cut(s)	384, 399, 470, 911
BstV1I	GCAGC	2 cut(s)	499, 890
BstV2I	GAAGAC	2 cut(s)	41, 211
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu15I	ATCGAT	2 cut(s)	162, 366
BsuRI	GGCC	2 cut(s)	462, 1240
BsuTUI	ATCGAT	2 cut(s)	162, 366
BtgI	CCRYGG	1 cut(s)	382
BtgZI	GCGATG	2 cut(s)	882, 1092
BtrI	CACGTC	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	192, 857
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	88, 241, 500
CfoI	GCGC	1 cut(s)	470
Cfr42I	CCGCGG	1 cut(s)	385
ClaI	ATCGAT	2 cut(s)	162, 366
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	79, 607
CviAII	CATG	3 cut(s)	227, 513, 781
CviQI	GTAC	2 cut(s)	79, 607
DdeI	CTNAG	2 cut(s)	464, 1235
Eam1104I	CTCTTC	3 cut(s)	931, 966, 1067
EarI	CTCTTC	3 cut(s)	931, 966, 1067
Eco147I	AGGCCT	1 cut(s)	1240
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	2 cut(s)	710, 952
EcoRI	GAATTC	2 cut(s)	683, 787
EcoRII	CCWGG	1 cut(s)	791
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	230, 516, 784
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 1110, 1142
FatI	CATG	3 cut(s)	226, 512, 780
FauI	CCCGC	1 cut(s)	587
FauNDI	CATATG	1 cut(s)	1170
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	3 cut(s)	382, 488, 879
Fsp4HI	GCNGC	3 cut(s)	382, 488, 879
FspBI	CTAG	2 cut(s)	53, 425
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	3 cut(s)	382, 488, 879
HaeIII	GGCC	2 cut(s)	462, 1240
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	3 cut(s)	230, 516, 784
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	8 cut(s)	415, 479, 736, 762, 854, 942, 983, 1059
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	4 cut(s)	136, 197, 296, 1208
Hpy166II	GTNNAC	4 cut(s)	79, 391, 874, 993
Hpy188I	TCNGA	8 cut(s)	155, 359, 454, 666, 696, 735, 849, 982
Hpy8I	GTNNAC	4 cut(s)	79, 391, 874, 993
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	1103, 1251
HpyCH4IV	ACGT	4 cut(s)	213, 273, 531, 609
HpyCH4V	TGCA	1 cut(s)	1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 533
HpyF3I	CTNAG	2 cut(s)	464, 1235
HpySE526I	ACGT	4 cut(s)	213, 273, 531, 609
Hsp92II	CATG	3 cut(s)	230, 516, 784
HspAI	GCGC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	861
KspI	CCGCGG	1 cut(s)	385
LguI	GCTCTTC	1 cut(s)	1067
LmnI	GCTCC	2 cut(s)	359, 569
LpnPI	CCDG	8 cut(s)	87, 359, 423, 537, 552, 606, 778, 805
Lsp1109I	GCAGC	2 cut(s)	499, 890
LweI	GCATC	3 cut(s)	15, 180, 997
MaeI	CTAG	2 cut(s)	53, 425
MaeII	ACGT	4 cut(s)	213, 273, 531, 609
MaeIII	GTNAC	2 cut(s)	203, 1153
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	9 cut(s)	38, 350, 683, 697, 754, 787, 1028, 1063, 1217
MluI	ACGCGT	1 cut(s)	909
MlyI	GAGTC	2 cut(s)	488, 848
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	233, 468, 706, 717, 1027, 1187
MseI	TTAA	5 cut(s)	158, 276, 318, 1182, 1318
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	793
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	793
MvnI	CGCG	4 cut(s)	384, 399, 470, 911
MwoI	GCNNNNNNNGC	2 cut(s)	381, 533
NdeI	CATATG	1 cut(s)	1170
NlaIII	CATG	3 cut(s)	230, 516, 784
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	203, 1153
NspI	RCATGY	1 cut(s)	516
PaqCI	CACCTGC	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	1240
PciI	ACATGT	1 cut(s)	512
PciSI	GCTCTTC	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	3 cut(s)	159, 363, 435
PfeI	GAWTC	6 cut(s)	415, 736, 762, 942, 983, 1059
PkrI	GCNGC	3 cut(s)	383, 489, 880
PleI	GAGTC	2 cut(s)	487, 848
PpsI	GAGTC	2 cut(s)	487, 848
Ppu21I	YACGTR	2 cut(s)	532, 610
PscI	ACATGT	1 cut(s)	512
PshBI	ATTAAT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	2 cut(s)	80, 608
RsaNI	GTAC	2 cut(s)	79, 607
SacII	CCGCGG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	1067
SaqAI	TTAA	5 cut(s)	158, 276, 318, 1182, 1318
SatI	GCNGC	3 cut(s)	382, 488, 879
SchI	GAGTC	2 cut(s)	488, 848
ScrFI	CCNGG	1 cut(s)	793
SfaNI	GCATC	3 cut(s)	15, 180, 997
Sfr303I	CCGCGG	1 cut(s)	385
SgrBI	CCGCGG	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	936
SmoI	CTYRAG	1 cut(s)	936
Sse9I	AATT	9 cut(s)	38, 350, 683, 697, 754, 787, 1028, 1063, 1217
SseBI	AGGCCT	1 cut(s)	1240
SsiI	CCGC	5 cut(s)	282, 382, 384, 397, 594
SspI	AATATT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	53, 425
StuI	AGGCCT	1 cut(s)	1240
StyD4I	CCNGG	1 cut(s)	791
TaiI	ACGT	4 cut(s)	216, 276, 534, 612
TasI	AATT	9 cut(s)	38, 350, 683, 697, 754, 787, 1028, 1063, 1217
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	6 cut(s)	415, 736, 762, 942, 983, 1059
Tru1I	TTAA	5 cut(s)	158, 276, 318, 1182, 1318
Tru9I	TTAA	5 cut(s)	158, 276, 318, 1182, 1318
TscAI	CASTG	2 cut(s)	192, 864
TseFI	GTSAC	2 cut(s)	203, 1153
TseI	GCWGC	2 cut(s)	487, 878
Tsp45I	GTSAC	2 cut(s)	203, 1153
TspDTI	ATGAA	3 cut(s)	51, 243, 1157
TspGWI	ACGGA	2 cut(s)	621, 877
TspRI	CASTG	2 cut(s)	192, 864
VspI	ATTAAT	1 cut(s)	158
XapI	RAATTY	3 cut(s)	683, 787, 1028
XbaI	TCTAGA	1 cut(s)	424
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	2 cut(s)	53, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.