Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003242.1

Orthogroup ID

OG0015822

Physical Location & Seq

Genomic Coordinates Forward (+)

30016 .. 31416

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003242.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgtccaatatggagaacaagaaaggaaacatattgatgcagaagtacgagctggggcgccttctcgggaaaggtacatttgcaaaggtttaccacgctcgaaacatgaagaccggccaaagtgttgccattaagatcatagacaaggagaaggtgcaacaagtgggattgattgatcaaatcaagcgtgaaatctctgtgatgcgccttgttaggcaccccaatgttgttcagctctatgaagtgatggccagcaagaccaaaatctactttgccatggagtatgtgagaggtggtgagctcttcaacaaggttgccaggggaaagctcaaggaagacatggctagaaaatactttcaacagttgattggcgcagttgattactgccacagccgcggagtttatcaccgtgacatcaagccagagaatctcctggttgatgagcatggtaacctcaaggtttcagatttcgggctgagtgctttgtgggagtcgagaggtcaagatggtctgctgcacacaacttgtggaactcctgcttatgtagcaccagaagtgatcaacaagaaaggttatgatggtgccaaggctgatatatggtcatgtggggttgtcctttacgttcttttggctggttttcttccattccatgacacaaatctcatggaaatgtacaggaagatcagcagaggagacttcaagagtccgcaatggttccctccagaggttcgtaagcttcttgcacggattcttgatccaaatgccaccgcgagaataagtgtggacaagatcatggagaacagttggttcaagaaggggtttaagcacattgatgccccattaccgattccaggtgatccaaacacatctatcactgatgtgcattctgcttttggatcaccagacagttctgaaagcagttctaataggaaaccagcaattactactgcagcagcaagccccatgaagccaactaacttcaatgcctttgacatcatatctctctcacccggatttgatctatccggtttgtttgagggtgatataaagcaaagatcatcacagtcacgattcaccactacaaaaccagcctctactattgtttcaaaatttgaagagatagcgcagatggagagattcagatgcatgaagcaggacggaactgtcaagttgcagggcagcagggaaggaagaaaagggcagcttggtattgatgctgagattttcgaggtcacgccttcgttttttgttgtggaggtgaagaaaacagctggggacacattggaatacatgcaattctatgacgaagatttaaagccctctcttaaagacatagtatggacttggcaaggaaatgatccacagcaacaacatcagccagcaacccaagttatttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

466

Amino Acids

52.46

Weight (kDa)

9.08

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45820
fragaria_vesca	FvH4_3g07630
malus_domestica	MD05G1298900.v1.1 MD10G1278400.v1.1
prunus_persica	Prupe.4G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011061
rosa_laevigata	RLG00000031806
rosa_multiflora	Rmu_sc0003242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00065350
rosa_rugosa	Rorug04G0454900
rosa_samantha	Rh5AG087000 Rh5BG081900 Rh5CG094700
rosa_wichuraiana	Rw0G000150 Rw0G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1163
AccB1I	GGYRCC	3 cut(s)	57, 216, 581
AccII	CGCG	2 cut(s)	396, 770
AciI	CCGC	4 cut(s)	394, 396, 707, 768
AclWI	GGATC	4 cut(s)	749, 851, 904, 1352
AcoI	YGGCCR	2 cut(s)	115, 249
AcsI	RAATTY	1 cut(s)	1109
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	3 cut(s)	47, 76, 674
AfiI	CCNNNNNNNGG	2 cut(s)	724, 851
AgsI	TTSAA	7 cut(s)	307, 359, 700, 811, 982, 1107, 1115
AjnI	CCWGG	3 cut(s)	317, 432, 850
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	7 cut(s)	52, 235, 301, 328, 736, 1204, 1271
AluI	AGCT	7 cut(s)	52, 235, 301, 328, 736, 1204, 1271
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	4 cut(s)	749, 851, 904, 1352
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	115, 249
ApeKI	GCWGC	5 cut(s)	514, 950, 953, 1179, 1201
ApoI	RAATTY	1 cut(s)	1109
AspLEI	GCGC	4 cut(s)	60, 207, 374, 1126
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	8 cut(s)	308, 398, 866, 891, 999, 1052, 1066, 1270
AvaI	CYCGRG	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	3 cut(s)	57, 216, 581
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	2 cut(s)	116, 342
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	501, 962, 965, 1191, 1213
BccI	CCATC	4 cut(s)	241, 500, 572, 1123
BciT130I	CCWGG	3 cut(s)	319, 434, 852
BclI	TGATCA	2 cut(s)	175, 558
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	948
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	6 cut(s)	394, 515, 951, 954, 1180, 1202
BlsI	GCNGC	6 cut(s)	395, 516, 952, 955, 1181, 1203
Bme1390I	CCNGG	4 cut(s)	319, 434, 852, 1011
BmeT110I	CYCGRG	1 cut(s)	65
BmiI	GGNNCC	4 cut(s)	59, 218, 583, 716
BmrFI	CCNGG	4 cut(s)	319, 434, 852, 1011
BmsI	GCATC	5 cut(s)	27, 192, 823, 1133, 1204
BpiI	GAAGAC	2 cut(s)	116, 342
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	2 cut(s)	314, 440
BpuMI	CCSGG	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	276, 318, 394, 585
BsaWI	WCCGGW	1 cut(s)	1025
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 851
Bse118I	RCCGGY	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	716
BseBI	CCWGG	3 cut(s)	319, 434, 852
BseDI	CCNNGG	4 cut(s)	276, 318, 394, 585
BseLI	CCNNNNNNNGG	2 cut(s)	724, 851
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	2 cut(s)	467, 1209
BseRI	GAGGAG	1 cut(s)	705
BseXI	GCAGC	5 cut(s)	501, 962, 965, 1191, 1213
BseYI	CCCAGC	2 cut(s)	52, 1271
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	396, 770
BshFI	GGCC	2 cut(s)	117, 251
BshNI	GGYRCC	3 cut(s)	57, 216, 581
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	114, 1011, 1026
BslFI	GGGAC	1 cut(s)	1289
BslI	CCNNNNNNNGG	2 cut(s)	724, 851
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	1289
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	117, 251
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	4 cut(s)	394, 396, 707, 768
BspANI	GGCC	2 cut(s)	117, 251
BspCNI	CTCAG	2 cut(s)	468, 1210
BspFNI	CGCG	2 cut(s)	396, 770
BspLI	GGNNCC	4 cut(s)	59, 218, 583, 716
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	4 cut(s)	749, 851, 904, 1352
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	3 cut(s)	57, 216, 581
BsrDI	GCAATG	1 cut(s)	716
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	4 cut(s)	276, 318, 394, 585
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	276, 585
Bst2UI	CCWGG	3 cut(s)	319, 434, 852
Bst4CI	ACNGT	6 cut(s)	363, 410, 803, 908, 1065, 1165
Bst6I	CTCTTC	2 cut(s)	308, 1110
BstACI	GRCGYC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	3 cut(s)	253, 958, 1380
BstDEI	CTNAG	3 cut(s)	476, 1218, 1398
BstDSI	CCRYGG	2 cut(s)	276, 394
BstEII	GGTNACC	1 cut(s)	449
BstFNI	CGCG	2 cut(s)	396, 770
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	4 cut(s)	60, 207, 374, 1126
BstMAI	GTCTC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 545
BstNI	CCWGG	3 cut(s)	319, 434, 852
BstNSI	RCATGY	1 cut(s)	1294
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	317, 432, 850, 1009
BstSFI	CTRYAG	1 cut(s)	948
BstUI	CGCG	2 cut(s)	396, 770
BstV1I	GCAGC	5 cut(s)	501, 962, 965, 1191, 1213
BstV2I	GAAGAC	2 cut(s)	116, 342
BsuRI	GGCC	2 cut(s)	117, 251
BtgI	CCRYGG	2 cut(s)	276, 394
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	253, 958, 1380
CfoI	GCGC	4 cut(s)	60, 207, 374, 1126
Cfr10I	RCCGGY	1 cut(s)	113
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	46, 75, 673
CviQI	GTAC	3 cut(s)	46, 75, 673
DdeI	CTNAG	3 cut(s)	476, 1218, 1398
DinI	GGCGCC	1 cut(s)	59
DraI	TTTAAA	1 cut(s)	1314
DrdI	GACNNNNNNGTC	1 cut(s)	1163
DseDI	GACNNNNNNGTC	1 cut(s)	1163
EaeI	YGGCCR	2 cut(s)	115, 249
Eam1104I	CTCTTC	2 cut(s)	308, 1110
EarI	CTCTTC	2 cut(s)	308, 1110
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	276, 585
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	317, 432, 850
EcoT14I	CCWWGG	2 cut(s)	276, 585
EcoT22I	ATGCAT	1 cut(s)	1148
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	59
EheI	GGCGCC	1 cut(s)	59
ErhI	CCWWGG	2 cut(s)	276, 585
FalI	AAGNNNNNCTT	2 cut(s)	1188, 1220
FaqI	GGGAC	1 cut(s)	1289
FbaI	TGATCA	2 cut(s)	175, 558
Fnu4HI	GCNGC	6 cut(s)	394, 515, 951, 954, 1180, 1202
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	394, 515, 951, 954, 1180, 1202
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	4 cut(s)	59, 206, 373, 1125
GluI	GCNGC	6 cut(s)	394, 515, 951, 954, 1180, 1202
GsaI	CCCAGC	2 cut(s)	56, 1275
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	117, 251
HapII	CCGG	3 cut(s)	114, 1011, 1026
HhaI	GCGC	4 cut(s)	60, 207, 374, 1126
Hin1I	GRCGYC	1 cut(s)	58
Hin6I	GCGC	4 cut(s)	58, 205, 372, 1124
HinP1I	GCGC	4 cut(s)	58, 205, 372, 1124
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	7 cut(s)	427, 491, 703, 748, 847, 1071, 1137
HpaII	CCGG	3 cut(s)	114, 1011, 1026
HphI	GGTGA	8 cut(s)	308, 398, 866, 891, 999, 1052, 1066, 1270
Hpy166II	GTNNAC	2 cut(s)	91, 784
Hpy188I	TCNGA	3 cut(s)	466, 913, 1142
Hpy188III	TCNNGA	8 cut(s)	67, 495, 503, 700, 722, 752, 811, 1068
Hpy8I	GTNNAC	2 cut(s)	91, 784
HpyAV	CCTTC	5 cut(s)	71, 145, 808, 1181, 1248
HpyCH4III	ACNGT	6 cut(s)	363, 410, 803, 908, 1065, 1165
HpyCH4IV	ACGT	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 545
HpyF3I	CTNAG	3 cut(s)	476, 1218, 1398
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	58
HspAI	GCGC	4 cut(s)	58, 205, 372, 1124
KasI	GGCGCC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	175, 558
KspI	CCGCGG	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	308
Lsp1109I	GCAGC	5 cut(s)	501, 962, 965, 1191, 1213
LweI	GCATC	5 cut(s)	27, 192, 823, 1133, 1204
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	410, 449, 1065, 1231
MboII	GAAGA	9 cut(s)	121, 295, 347, 632, 691, 1127, 1203, 1273, 1319
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	939, 1109, 1295
MluNI	TGGCCA	1 cut(s)	251
Mly113I	GGCGCC	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	500, 712
Mox20I	TGGCCA	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	1148
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	4 cut(s)	132, 822, 1313, 1326
MslI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	396, 1271
MspI	CCGG	3 cut(s)	114, 1011, 1026
MspR9I	CCNGG	4 cut(s)	319, 434, 852, 1011
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	3 cut(s)	319, 434, 852
MvnI	CGCG	2 cut(s)	396, 770
MwoI	GCNNNNNNNGC	2 cut(s)	393, 545
NarI	GGCGCC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	1011
NcoI	CCATGG	1 cut(s)	276
NlaIV	GGNNCC	4 cut(s)	59, 218, 583, 716
NmuCI	GTSAC	3 cut(s)	410, 1065, 1231
NsiI	ATGCAT	1 cut(s)	1148
NspI	RCATGY	1 cut(s)	1294
OliI	CACNNNNGTG	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	308
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	5 cut(s)	427, 748, 847, 1071, 1137
PkrI	GCNGC	6 cut(s)	395, 516, 952, 955, 1181, 1203
PleI	GAGTC	2 cut(s)	499, 711
PluTI	GGCGCC	1 cut(s)	61
PpsI	GAGTC	2 cut(s)	499, 711
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	317, 432, 850
PspEI	GGTNACC	1 cut(s)	449
PspFI	CCCAGC	2 cut(s)	52, 1271
PspGI	CCWGG	3 cut(s)	317, 432, 850
PspN4I	GGNNCC	4 cut(s)	59, 218, 583, 716
PstI	CTGCAG	1 cut(s)	952
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	3 cut(s)	47, 76, 674
RsaNI	GTAC	3 cut(s)	46, 75, 673
RseI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	132, 822, 1313, 1326
SatI	GCNGC	6 cut(s)	394, 515, 951, 954, 1180, 1202
SchI	GAGTC	2 cut(s)	500, 712
ScrFI	CCNGG	4 cut(s)	319, 434, 852, 1011
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	5 cut(s)	27, 192, 823, 1133, 1204
SfcI	CTRYAG	1 cut(s)	948
SfoI	GGCGCC	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SmiMI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
SmlI	CTYRAG	2 cut(s)	329, 455
SmoI	CTYRAG	2 cut(s)	329, 455
Sse9I	AATT	3 cut(s)	939, 1109, 1295
SsiI	CCGC	4 cut(s)	394, 396, 707, 768
SspDI	GGCGCC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	317, 432, 850, 1009
StyI	CCWWGG	2 cut(s)	276, 585
TaaI	ACNGT	6 cut(s)	363, 410, 803, 908, 1065, 1165
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	100, 494, 1227
TasI	AATT	3 cut(s)	939, 1109, 1295
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	5 cut(s)	427, 748, 847, 1071, 1137
Tru1I	TTAA	4 cut(s)	132, 822, 1313, 1326
Tru9I	TTAA	4 cut(s)	132, 822, 1313, 1326
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	3 cut(s)	410, 1065, 1231
TseI	GCWGC	5 cut(s)	514, 950, 953, 1179, 1201
Tsp45I	GTSAC	3 cut(s)	410, 1065, 1231
TspDTI	ATGAA	4 cut(s)	122, 255, 980, 1163
TspGWI	ACGGA	2 cut(s)	760, 1173
TspRI	CASTG	1 cut(s)	880
XapI	RAATTY	1 cut(s)	1109
XceI	RCATGY	1 cut(s)	1294
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.