Rh5BG081900

CBL-interacting protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
7006719 .. 7009429
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG081900.1

Sequence Viewer

Length: 1401 bp
ATGTCCAATATGGAGAACAAGAAAGGAAACATATTGATGCAGAAGTACGAGCTGGGGCGCCTTCTCGGGAAAGGTACATTTGCAAAGGTATACCATGCTCGAAACATGAAGACCGGCCAAAGTGTTGCCATTAAGATCATAGACAAGGAGAAGGTGCAACAAGTGGGATTGATTGATCAAATCAAGCGTGAAATCTCTGTGATGCGCCTTGTTAGGCACCCAAATGTTGTTCAGCTCTATGAAGTGATGGCCAGCAAGACCAAAATCTACTTTGCCATGGAGTATGTGAGAGGTGGTGAGCTCTTCAACAAGGTTGCCAGGGGAAAGCTCAAGGAAGACATGGCTAGAAAATACTTTCAACAGTTGATTGGCGCCGTTGATTACTGCCACAGCCGCGGAGTTTATCACCGTGACATCAAGCCAGAGAATCTCCTGGTTGATGAGCATGGTAACCTCAAGGTTTCAGATTTCGGGCTGAGTGCATTGTGGGAGTCGAGAGGTCAAGATGGTCTGCTGCACACAACTTGTGGAACTCCTGCTTATGTAGCACCAGAAGTGATCAACAAGAAAGGTTATGATGGTGCCAAGGCTGATATATGGTCATGTGGGGTTGTCCTTTACGTTCTTTTGGCTGGTTTTCTTCCATTCCATGACACAAATCTCATGGAAATGTACAGGAAGATCAGCAGAGGAGACTTTAAGAGTCCGCATTGGTTCCCTCCAGAGGTTCGTAAGCTTCTTGCACGGATTCTTGATCCGAATGCCACCGCGAGAATAAGTGTGGACAAGATCATGGAGAACAGTTGGTTCAAGAAGGGGTTTAAGCACATTGATGCCCCATTACCGATTCCAGGTGATCCAAACACATCTATCACTGATGTGCATTCTGCTTTTGGATCACCAGACAGTTCTGAAAGCAGTTCTAATAGGAAACCAGCAATTACTACTGCAGCAGCAAGCCCCATGAAGCCAACTAACTTCAATGCCTTTGACATCATATCTCTCTCACCCGGATTTGATCTATCCGGTTTGTTTGAGGGTGATATGAAGCAAAGATCATCACAGTCACGATTCACCACTACAAAACCAGCCTCTACTATTGTTTCAAAATTTGAAGAGATAGCGCAGATGGAGAGATTCAGATGCATGAAGCAGGACGGAACTGTCAAGTTGCAGGGCAGCAGGGAAGGAAGAAAAGGGCAGCTTGGTATTGATGCTGAGATTTTCGAGGTCACGCCTTCGTTTTTTGTTGTGGAGGTGAAGAAAACAGCTGGGGACACATTGGAATACATGCAATTCTATGACCAAGATTTAAAGCCCTCTCTTAAAGACATAGTATGGACTTGGCAAGGAAATGATCCACAGCAACAACATCAGCCAGCAACCCAAGTTATTTCTTAG

Protein Analysis

466

Amino Acids

52.49

Weight (kDa)

9.15

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 16 - 270 2.6e-76 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 17 - 266 3e-41 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 106 - 258 4.4e-09 Kinase-like
NAF PF03822 324 - 384 6.6e-21 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45820
fragaria_vesca FvH4_3g07630
malus_domestica MD05G1298900.v1.1 MD10G1278400.v1.1
prunus_persica Prupe.4G062900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0011061
rosa_laevigata RLG00000031806
rosa_multiflora Rmu_sc0003242.1_g000007
rosa_roxburghii Rroxscaffold_1G00065350
rosa_rugosa Rorug04G0454900
rosa_samantha Rh5AG087000 Rh5BG081900 Rh5CG094700
rosa_wichuraiana Rw0G000150 Rw0G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1163
AccB1I GGYRCC 4 cut(s) 57, 216, 371, 581
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 396, 770
AciI CCGC 4 cut(s) 394, 396, 707, 768
AclWI GGATC 4 cut(s) 749, 851, 904, 1352
AcoI YGGCCR 2 cut(s) 115, 249
AcsI RAATTY 1 cut(s) 1109
AcyI GRCGYC 2 cut(s) 58, 372
AfaI GTAC 3 cut(s) 47, 76, 674
AfiI CCNNNNNNNGG 2 cut(s) 724, 851
AgsI TTSAA 6 cut(s) 307, 359, 811, 982, 1107, 1115
AjnI CCWGG 3 cut(s) 317, 432, 850
AleI CACNNNNGTG 1 cut(s) 878
AluBI AGCT 7 cut(s) 52, 235, 301, 328, 736, 1204, 1271
AluI AGCT 7 cut(s) 52, 235, 301, 328, 736, 1204, 1271
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 4 cut(s) 749, 851, 904, 1352
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 2 cut(s) 115, 249
ApeKI GCWGC 5 cut(s) 514, 950, 953, 1179, 1201
ApoI RAATTY 1 cut(s) 1109
AspLEI GCGC 4 cut(s) 60, 207, 374, 1126
AsuC2I CCSGG 1 cut(s) 1011
AsuHPI GGTGA 8 cut(s) 308, 398, 866, 891, 999, 1052, 1066, 1270
AvaI CYCGRG 1 cut(s) 65
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 4 cut(s) 57, 216, 371, 581
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 2 cut(s) 116, 342
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 5 cut(s) 501, 962, 965, 1191, 1213
BccI CCATC 4 cut(s) 241, 500, 572, 1123
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 3 cut(s) 319, 434, 852
BclI TGATCA 2 cut(s) 175, 558
BcnI CCSGG 1 cut(s) 1011
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 2 cut(s) 61, 375
BisI GCNGC 6 cut(s) 394, 515, 951, 954, 1180, 1202
BlsI GCNGC 6 cut(s) 395, 516, 952, 955, 1181, 1203
Bme1390I CCNGG 4 cut(s) 319, 434, 852, 1011
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 5 cut(s) 59, 218, 373, 583, 716
BmrFI CCNGG 4 cut(s) 319, 434, 852, 1011
BmsI GCATC 5 cut(s) 27, 192, 823, 1133, 1204
BpiI GAAGAC 2 cut(s) 116, 342
BpmI CTGGAG 1 cut(s) 705
BpuEI CTTGAG 2 cut(s) 314, 440
BpuMI CCSGG 1 cut(s) 1011
BsaHI GRCGYC 2 cut(s) 58, 372
BsaJI CCNNGG 4 cut(s) 276, 318, 394, 585
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 724, 851
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 3 cut(s) 319, 434, 852
BseDI CCNNGG 4 cut(s) 276, 318, 394, 585
BseLI CCNNNNNNNGG 2 cut(s) 724, 851
BseMII CTCAG 2 cut(s) 467, 1209
BseRI GAGGAG 1 cut(s) 705
BseXI GCAGC 5 cut(s) 501, 962, 965, 1191, 1213
BseYI CCCAGC 2 cut(s) 52, 1271
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 2 cut(s) 396, 770
BshFI GGCC 2 cut(s) 117, 251
BshNI GGYRCC 4 cut(s) 57, 216, 371, 581
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 3 cut(s) 114, 1011, 1026
BslFI GGGAC 1 cut(s) 1289
BslI CCNNNNNNNGG 2 cut(s) 724, 851
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 1289
BsmI GAATGC 2 cut(s) 766, 883
BsnI GGCC 2 cut(s) 117, 251
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 672
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 4 cut(s) 394, 396, 707, 768
BspANI GGCC 2 cut(s) 117, 251
BspCNI CTCAG 2 cut(s) 468, 1210
BspFNI CGCG 2 cut(s) 396, 770
BspLI GGNNCC 5 cut(s) 59, 218, 373, 583, 716
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 4 cut(s) 749, 851, 904, 1352
BspQI GCTCTTC 1 cut(s) 308
BspT107I GGYRCC 4 cut(s) 57, 216, 371, 581
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 4 cut(s) 276, 318, 394, 585
BssNAI GTATAC 1 cut(s) 91
BssNI GRCGYC 2 cut(s) 58, 372
BssT1I CCWWGG 2 cut(s) 276, 585
Bst1107I GTATAC 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 319, 434, 852
Bst4CI ACNGT 6 cut(s) 363, 410, 803, 908, 1065, 1165
Bst6I CTCTTC 2 cut(s) 308, 1110
BstACI GRCGYC 2 cut(s) 58, 372
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 253, 958, 1380
BstDEI CTNAG 3 cut(s) 476, 1218, 1398
BstDSI CCRYGG 2 cut(s) 276, 394
BstEII GGTNACC 1 cut(s) 449
BstFNI CGCG 2 cut(s) 396, 770
BstH2I RGCGCY 2 cut(s) 61, 375
BstHHI GCGC 4 cut(s) 60, 207, 374, 1126
BstMAI GTCTC 1 cut(s) 687
BstMWI GCNNNNNNNGC 2 cut(s) 393, 545
BstNI CCWGG 3 cut(s) 319, 434, 852
BstNSI RCATGY 1 cut(s) 1294
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 317, 432, 850, 1009
BstSFI CTRYAG 1 cut(s) 948
BstUI CGCG 2 cut(s) 396, 770
BstV1I GCAGC 5 cut(s) 501, 962, 965, 1191, 1213
BstV2I GAAGAC 2 cut(s) 116, 342
BstZ17I GTATAC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 117, 251
BtgI CCRYGG 2 cut(s) 276, 394
BtsIMutI CAGTG 1 cut(s) 873
Cac8I GCNNGC 3 cut(s) 253, 958, 1380
CfoI GCGC 4 cut(s) 60, 207, 374, 1126
Cfr10I RCCGGY 1 cut(s) 113
Cfr42I CCGCGG 1 cut(s) 397
Csp6I GTAC 3 cut(s) 46, 75, 673
CviQI GTAC 3 cut(s) 46, 75, 673
DdeI CTNAG 3 cut(s) 476, 1218, 1398
DinI GGCGCC 2 cut(s) 59, 373
DraI TTTAAA 1 cut(s) 1314
DrdI GACNNNNNNGTC 1 cut(s) 1163
DseDI GACNNNNNNGTC 1 cut(s) 1163
EaeI YGGCCR 2 cut(s) 115, 249
Eam1104I CTCTTC 2 cut(s) 308, 1110
EarI CTCTTC 2 cut(s) 308, 1110
Ecl136II GAGCTC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 276, 585
Eco24I GRGCYC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 449
EcoRII CCWGG 3 cut(s) 317, 432, 850
EcoT14I CCWWGG 2 cut(s) 276, 585
EcoT22I ATGCAT 1 cut(s) 1148
EcoT38I GRGCYC 1 cut(s) 303
EgeI GGCGCC 2 cut(s) 59, 373
EheI GGCGCC 2 cut(s) 59, 373
ErhI CCWWGG 2 cut(s) 276, 585
FalI AAGNNNNNCTT 2 cut(s) 1188, 1220
FaqI GGGAC 1 cut(s) 1289
FbaI TGATCA 2 cut(s) 175, 558
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 394, 515, 951, 954, 1180, 1202
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 6 cut(s) 394, 515, 951, 954, 1180, 1202
FspBI CTAG 1 cut(s) 345
GlaI GCGC 4 cut(s) 59, 206, 373, 1125
GluI GCNGC 6 cut(s) 394, 515, 951, 954, 1180, 1202
GsaI CCCAGC 2 cut(s) 56, 1275
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 2 cut(s) 61, 375
HaeIII GGCC 2 cut(s) 117, 251
HapII CCGG 3 cut(s) 114, 1011, 1026
HhaI GCGC 4 cut(s) 60, 207, 374, 1126
Hin1I GRCGYC 2 cut(s) 58, 372
Hin6I GCGC 4 cut(s) 58, 205, 372, 1124
HinP1I GCGC 4 cut(s) 58, 205, 372, 1124
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 7 cut(s) 427, 491, 703, 748, 847, 1071, 1137
HpaII CCGG 3 cut(s) 114, 1011, 1026
HphI GGTGA 8 cut(s) 308, 398, 866, 891, 999, 1052, 1066, 1270
Hpy166II GTNNAC 2 cut(s) 91, 784
Hpy188I TCNGA 4 cut(s) 466, 759, 913, 1142
Hpy188III TCNNGA 7 cut(s) 67, 495, 503, 722, 752, 811, 1068
Hpy8I GTNNAC 2 cut(s) 91, 784
HpyAV CCTTC 5 cut(s) 71, 145, 808, 1181, 1248
HpyCH4III ACNGT 6 cut(s) 363, 410, 803, 908, 1065, 1165
HpyCH4IV ACGT 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 545
HpyF3I CTNAG 3 cut(s) 476, 1218, 1398
HpySE526I ACGT 1 cut(s) 621
Hsp92I GRCGYC 2 cut(s) 58, 372
HspAI GCGC 4 cut(s) 58, 205, 372, 1124
KasI GGCGCC 2 cut(s) 57, 371
Ksp22I TGATCA 2 cut(s) 175, 558
KspI CCGCGG 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 308
Lsp1109I GCAGC 5 cut(s) 501, 962, 965, 1191, 1213
LweI GCATC 5 cut(s) 27, 192, 823, 1133, 1204
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 4 cut(s) 410, 449, 1065, 1231
MboII GAAGA 8 cut(s) 121, 295, 347, 632, 691, 1127, 1203, 1273
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 3 cut(s) 939, 1109, 1295
MluNI TGGCCA 1 cut(s) 251
Mly113I GGCGCC 2 cut(s) 58, 372
MlyI GAGTC 2 cut(s) 500, 712
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 251
MseI TTAA 5 cut(s) 132, 699, 822, 1313, 1326
MslI CAYNNNNRTG 5 cut(s) 35, 222, 668, 831, 878
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 2 cut(s) 396, 1271
MspI CCGG 3 cut(s) 114, 1011, 1026
MspR9I CCNGG 4 cut(s) 319, 434, 852, 1011
Mva1269I GAATGC 2 cut(s) 766, 883
MvaI CCWGG 3 cut(s) 319, 434, 852
MvnI CGCG 2 cut(s) 396, 770
MwoI GCNNNNNNNGC 2 cut(s) 393, 545
NarI GGCGCC 2 cut(s) 58, 372
NciI CCSGG 1 cut(s) 1011
NcoI CCATGG 1 cut(s) 276
NlaIV GGNNCC 5 cut(s) 59, 218, 373, 583, 716
NmuCI GTSAC 3 cut(s) 410, 1065, 1231
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 1 cut(s) 1294
OliI CACNNNNGTG 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 308
PctI GAATGC 2 cut(s) 766, 883
PfeI GAWTC 5 cut(s) 427, 748, 847, 1071, 1137
PkrI GCNGC 6 cut(s) 395, 516, 952, 955, 1181, 1203
PleI GAGTC 2 cut(s) 499, 711
PluTI GGCGCC 2 cut(s) 61, 375
PpsI GAGTC 2 cut(s) 499, 711
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 3 cut(s) 317, 432, 850
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 2 cut(s) 52, 1271
PspGI CCWGG 3 cut(s) 317, 432, 850
PspN4I GGNNCC 5 cut(s) 59, 218, 373, 583, 716
PstI CTGCAG 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 1271
RsaI GTAC 3 cut(s) 47, 76, 674
RsaNI GTAC 3 cut(s) 46, 75, 673
RseI CAYNNNNRTG 5 cut(s) 35, 222, 668, 831, 878
SacI GAGCTC 1 cut(s) 303
SacII CCGCGG 1 cut(s) 397
SapI GCTCTTC 1 cut(s) 308
SaqAI TTAA 5 cut(s) 132, 699, 822, 1313, 1326
SatI GCNGC 6 cut(s) 394, 515, 951, 954, 1180, 1202
SchI GAGTC 2 cut(s) 500, 712
ScrFI CCNGG 4 cut(s) 319, 434, 852, 1011
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 5 cut(s) 27, 192, 823, 1133, 1204
SfcI CTRYAG 1 cut(s) 948
SfoI GGCGCC 2 cut(s) 59, 373
Sfr303I CCGCGG 1 cut(s) 397
SgrBI CCGCGG 1 cut(s) 397
SmiMI CAYNNNNRTG 5 cut(s) 35, 222, 668, 831, 878
SmlI CTYRAG 2 cut(s) 329, 455
SmoI CTYRAG 2 cut(s) 329, 455
Sse9I AATT 3 cut(s) 939, 1109, 1295
SsiI CCGC 4 cut(s) 394, 396, 707, 768
SspDI GGCGCC 2 cut(s) 57, 371
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 4 cut(s) 317, 432, 850, 1009
StyI CCWWGG 2 cut(s) 276, 585
TaaI ACNGT 6 cut(s) 363, 410, 803, 908, 1065, 1165
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 100, 494, 1227
TasI AATT 3 cut(s) 939, 1109, 1295
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 5 cut(s) 427, 748, 847, 1071, 1137
Tru1I TTAA 5 cut(s) 132, 699, 822, 1313, 1326
Tru9I TTAA 5 cut(s) 132, 699, 822, 1313, 1326
TscAI CASTG 1 cut(s) 880
TseFI GTSAC 3 cut(s) 410, 1065, 1231
TseI GCWGC 5 cut(s) 514, 950, 953, 1179, 1201
Tsp45I GTSAC 3 cut(s) 410, 1065, 1231
TspDTI ATGAA 5 cut(s) 122, 255, 980, 1061, 1163
TspGWI ACGGA 2 cut(s) 760, 1173
TspRI CASTG 1 cut(s) 880
XapI RAATTY 1 cut(s) 1109
XceI RCATGY 1 cut(s) 1294
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.