Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Reverse (-)

18710851 .. 18712559

Gene Structure 1709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCGCTGCTTTTGCTTCCAGATTAACCCGAGGAGGACGTTCATTGCTTGGAGGTCTTAACAATGGTGGTTCGATGAATTCTTCTAATGGAATGATGAATGAAAGTATCCTCTCTCAGCAGCAGCAGAGAAGGACATTTATTCAGATGGGGACTGTTCTCAAAGTCGTGGACAATTCAGGTGCGAAGAAAGTGATGTGTATTCAAGCTCTAAAGGGGAAAAAAGGAGCTAGACTTGGAGATACTATAGTTGCTTCAGTGAAAGAAGCGATGCCAAACGGTAAAGTGAAGAAAGGAGCGGTTGTGTATGGTGTGGTTGTTCGTGCTGCGATGCAGAGAGGTCGTGTTGATGGAAGTGAAGTTAGGTTTGATGATAACGCGGTTGTTCTTGTTGATAGTAAAGATAAGAATACTAAAACTGATCGCCAGCCGATTGGTACTAGAGTGTTTGGTCCTGTTCCTCATGAGCTTCGCAAGAAGAAACATCTCAAGATTCTTGCTTTGGCTCAACACGTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

173

Amino Acids

18.57

Weight (kDa)

10.76

Isoelectric Point (pI)

21.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	48 - 172	1.7e-42	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	380
AciI	CCGC	3 cut(s)	6, 299, 380
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	206
AluBI	AGCT	3 cut(s)	209, 230, 469
AluI	AGCT	3 cut(s)	209, 230, 469
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	8, 121, 124, 326
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	452
BaeI	ACNNNNGTAYC	4 cut(s)	234, 267, 429, 462
BbvI	GCAGC	3 cut(s)	133, 136, 313
BccI	CCATC	2 cut(s)	142, 344
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciVI	GTATCC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	231, 441
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	6, 9, 122, 125, 327
BlsI	GCNGC	5 cut(s)	7, 10, 123, 126, 328
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	452
BmsI	GCATC	2 cut(s)	261, 321
BpuEI	CTTGAG	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	133, 136, 313
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	3 cut(s)	6, 299, 380
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	157, 281
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	133, 136, 313
BstXI	CCANNNNNNTGG	1 cut(s)	434
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	2 cut(s)	284, 344
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	428
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	1 cut(s)	464
CviJI	RGCY	6 cut(s)	5, 209, 230, 430, 469, 506
CviKI_1	RGCY	6 cut(s)	5, 209, 230, 430, 469, 506
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	467
FaiI	YATR	3 cut(s)	248, 309, 465
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	6, 9, 122, 125, 327
Fsp4HI	GCNGC	5 cut(s)	6, 9, 122, 125, 327
FspBI	CTAG	2 cut(s)	231, 441
GluI	GCNGC	5 cut(s)	6, 9, 122, 125, 327
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	467
HinfI	GANTC	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	21, 464, 490
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	157, 281
HpyCH4IV	ACGT	2 cut(s)	40, 513
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	2 cut(s)	40, 513
Hsp92II	CATG	1 cut(s)	467
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	227, 296
LpnPI	CCDG	4 cut(s)	34, 165, 440, 468
Lsp1109I	GCAGC	3 cut(s)	133, 136, 313
LweI	GCATC	2 cut(s)	261, 321
MaeI	CTAG	2 cut(s)	231, 441
MaeII	ACGT	2 cut(s)	40, 513
MalI	GATC	1 cut(s)	423
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	1 cut(s)	421
MboII	GAAGA	4 cut(s)	75, 199, 301, 490
MluCI	AATT	2 cut(s)	79, 175
MnlI	CCTC	6 cut(s)	26, 29, 47, 122, 332, 471
MseI	TTAA	2 cut(s)	26, 60
MspA1I	CMGCKG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	1 cut(s)	467
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	5 cut(s)	7, 10, 123, 126, 328
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	26, 60
SatI	GCNGC	5 cut(s)	6, 9, 122, 125, 327
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	1 cut(s)	452
SetI	ASST	9 cut(s)	43, 58, 184, 211, 232, 343, 368, 471, 516
SfaNI	GCATC	2 cut(s)	261, 321
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	79, 175
SsiI	CCGC	3 cut(s)	6, 299, 380
SspMI	CTAG	2 cut(s)	231, 441
TaaI	ACNGT	2 cut(s)	157, 281
TaiI	ACGT	2 cut(s)	43, 516
TaqI	TCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	79, 175
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	26, 60
Tru9I	TTAA	2 cut(s)	26, 60
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	4 cut(s)	8, 121, 124, 326
TspDTI	ATGAA	4 cut(s)	33, 92, 113, 117
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	79
XspI	CTAG	2 cut(s)	231, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.