Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Reverse (-)

9441657 .. 9445014

Gene Structure 3358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1068800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTACAGGTTTGGCTTCGAAATGTTCACAGGTTGGTCGTTCGTTGTGCGGGGGCCTCAGCAACAACTTGTCTGGCATATTGAGTACATCACATGAGACGACAAGCAGCACTTTCTTATCTCAGCAGCAAAGGACCTTCATACAGATGAGGACTGTTCTCAAAGTCGTGGACAACTCAGGGGCGAAAAAGGTGATGTGTATACAAGCTTTGAAGGCAAATAAGAAGGGAGCAAGATTGGGAGACACCATTGTTGCATCAGTAAAGGAGGCCCATCCGAATGGAAAAGTGAAGAAAGGAAAGGTTGTTTATGGTGTGGTTGTTCGTGCTGCCATGCAGCGAGGCCGTTGTGATGGGAGTGAGGTCAAGTTTGATGACAATGCTGTGGTACTCGTCGACAAGCAAGGGCAGCCGATTGGGACAAGAGTATTTGGACCCGTCCCGCATGAGTTGAGGAAGAAAAAGCATGTCAAGATTCTCAGTTTGGCAGAGCATATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

168

Amino Acids

17.88

Weight (kDa)

10.15

Isoelectric Point (pI)

18.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	48 - 166	1.1e-46	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	202, 396
AciI	CCGC	2 cut(s)	51, 443
AfaI	GTAC	2 cut(s)	88, 390
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	2 cut(s)	92, 237
AoxI	GGCC	3 cut(s)	55, 270, 343
ApeKI	GCWGC	5 cut(s)	108, 127, 329, 337, 409
AspS9I	GGNCC	4 cut(s)	55, 135, 271, 434
AsuHPI	GGTGA	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	20
AvaII	GGWCC	2 cut(s)	135, 434
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	5 cut(s)	120, 139, 316, 349, 421
BccI	CCATC	2 cut(s)	282, 347
BceAI	ACGGC	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	92, 237
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	109, 128, 330, 338, 410
BlsI	GCNGC	5 cut(s)	110, 129, 331, 339, 411
Bme18I	GGWCC	2 cut(s)	135, 434
BmgT120I	GGNCC	4 cut(s)	55, 135, 271, 434
BmiI	GGNNCC	2 cut(s)	56, 436
BmsI	GCATC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	20
BseGI	GGATG	1 cut(s)	274
BseMII	CTCAG	4 cut(s)	73, 137, 192, 493
BseXI	GCAGC	5 cut(s)	120, 139, 316, 349, 421
BshFI	GGCC	3 cut(s)	57, 272, 345
BslFI	GGGAC	2 cut(s)	425, 433
BsmAI	GTCTC	2 cut(s)	92, 237
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	425, 433
BsnI	GGCC	3 cut(s)	57, 272, 345
Bsp119I	TTCGAA	1 cut(s)	20
BspACI	CCGC	2 cut(s)	51, 443
BspANI	GGCC	3 cut(s)	57, 272, 345
BspCNI	CTCAG	4 cut(s)	72, 136, 191, 492
BspLI	GGNNCC	2 cut(s)	56, 436
BspT104I	TTCGAA	1 cut(s)	20
BssNAI	GTATAC	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	20
BstDEI	CTNAG	4 cut(s)	59, 123, 178, 479
BstF5I	GGATG	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	92, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 409
BstNSI	RCATGY	1 cut(s)	470
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	120, 139, 316, 349, 421
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstZ17I	GTATAC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	57, 272, 345
BtsCI	GGATG	1 cut(s)	274
Cfr13I	GGNCC	4 cut(s)	55, 135, 271, 434
Csp6I	GTAC	2 cut(s)	87, 389
CviAII	CATG	4 cut(s)	95, 334, 446, 467
CviJI	RGCY	7 cut(s)	5, 17, 57, 209, 272, 345, 412
CviKI_1	RGCY	7 cut(s)	5, 17, 57, 209, 272, 345, 412
CviQI	GTAC	2 cut(s)	87, 389
DdeI	CTNAG	4 cut(s)	59, 123, 178, 479
Eco47I	GGWCC	2 cut(s)	135, 434
EcoO109I	RGGNCCY	2 cut(s)	55, 135
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	4 cut(s)	98, 337, 449, 470
FaiI	YATR	9 cut(s)	80, 96, 143, 203, 312, 335, 447, 468, 495
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	2 cut(s)	425, 433
FatI	CATG	4 cut(s)	94, 333, 445, 466
FauI	CCCGC	2 cut(s)	44, 450
FblI	GTMKAC	2 cut(s)	202, 396
Fnu4HI	GCNGC	5 cut(s)	109, 128, 330, 338, 410
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	109, 128, 330, 338, 410
GluI	GCNGC	5 cut(s)	109, 128, 330, 338, 410
HaeIII	GGCC	3 cut(s)	57, 272, 345
Hin1II	CATG	4 cut(s)	98, 337, 449, 470
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	475
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	29, 172, 203, 397
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	4 cut(s)	29, 172, 203, 397
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	148, 208, 220
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	257, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 409
HpyF3I	CTNAG	4 cut(s)	59, 123, 178, 479
Hsp92II	CATG	4 cut(s)	98, 337, 449, 470
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	3 cut(s)	17, 60, 165
Lsp1109I	GCAGC	5 cut(s)	120, 139, 316, 349, 421
LweI	GCATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	304, 469
MnlI	CCTC	6 cut(s)	68, 144, 262, 335, 355, 447
MslI	CAYNNNNRTG	2 cut(s)	146, 279
MwoI	GCNNNNNNNGC	2 cut(s)	215, 409
NlaIII	CATG	4 cut(s)	98, 337, 449, 470
NlaIV	GGNNCC	2 cut(s)	56, 436
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	5 cut(s)	110, 129, 331, 339, 411
PpuMI	RGGWCCY	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	56, 436
PspPI	GGNCC	4 cut(s)	55, 135, 271, 434
PspPPI	RGGWCCY	1 cut(s)	135
RsaI	GTAC	2 cut(s)	88, 390
RsaNI	GTAC	2 cut(s)	87, 389
RseI	CAYNNNNRTG	2 cut(s)	146, 279
SalI	GTCGAC	1 cut(s)	395
SatI	GCNGC	5 cut(s)	109, 128, 330, 338, 410
Sau96I	GGNCC	4 cut(s)	55, 135, 271, 434
SetI	ASST	7 cut(s)	13, 36, 140, 195, 211, 306, 366
SfaNI	GCATC	1 cut(s)	266
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	20
SinI	GGWCC	2 cut(s)	135, 434
SmiMI	CAYNNNNRTG	2 cut(s)	146, 279
SsiI	CCGC	2 cut(s)	51, 443
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	20, 396
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	475
TseI	GCWGC	5 cut(s)	108, 127, 329, 337, 409
TspDTI	ATGAA	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	135, 434
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	2 cut(s)	202, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.