Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Reverse (-)

6175145 .. 6175938

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCAAGCAGCACTTTCTTATTTCAGCAGCAAAGGACCTTCATACAGATGAGGACTGTTCTGAAAGTCGTGGACAACTCAGGGGCAAAGAAGGTGATGTGTATACAAGCTTTGAAGGCAAATAAGAAGGGGGCAAGATTGGGAGACACCATTGTTGCATCAGTAAAGGAGGCCCATCCCAATGGAAAAGTGAAGAAAGGAAAGGTTGTGTATGGTGTCGTTGTTCGTGCTGCCATGCAGCGAGGCCGCTGTGATGGGAGTGAGGTCAAGTTTGATGACAATGCTGTGGTACTTGTGGACAAGCAAGGGCAGCCGATCGGGACTAGAGTATTTGGACCTGTCCCGCATGAGTTGAGGAAGAAAAAGCATGTCAAGATTCTTAGTTTGGCAGAGCATATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

135

Amino Acids

14.68

Weight (kDa)

10.29

Isoelectric Point (pI)

14.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	2 cut(s)	247, 344
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	171, 244
ApeKI	GCWGC	5 cut(s)	9, 28, 230, 238, 310
AspS9I	GGNCC	3 cut(s)	36, 172, 335
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	36, 335
BbvI	GCAGC	5 cut(s)	21, 40, 217, 250, 322
BccI	CCATC	2 cut(s)	183, 248
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	6 cut(s)	10, 29, 231, 239, 247, 311
BlsI	GCNGC	6 cut(s)	11, 30, 232, 240, 248, 312
Bme18I	GGWCC	2 cut(s)	36, 335
BmgT120I	GGNCC	3 cut(s)	36, 172, 335
BmsI	GCATC	1 cut(s)	167
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	5 cut(s)	21, 40, 217, 250, 322
Bsh1285I	CGRYCG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	173, 246
BsiEI	CGRYCG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	326, 334
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	326, 334
BsnI	GGCC	2 cut(s)	173, 246
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	2 cut(s)	247, 344
BspANI	GGCC	2 cut(s)	173, 246
BspCNI	CTCAG	1 cut(s)	92
BssMI	GATC	1 cut(s)	315
BssNAI	GTATAC	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	79, 380
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	315
BstMCI	CGRYCG	1 cut(s)	318
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 310
BstNSI	RCATGY	1 cut(s)	371
BstV1I	GCAGC	5 cut(s)	21, 40, 217, 250, 322
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	173, 246
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	36, 172, 335
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	3 cut(s)	235, 347, 368
CviJI	RGCY	4 cut(s)	110, 173, 246, 313
CviKI_1	RGCY	4 cut(s)	110, 173, 246, 313
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	2 cut(s)	79, 380
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	36, 335
EcoO109I	RGGNCCY	1 cut(s)	36
FaeI	CATG	3 cut(s)	238, 350, 371
FaiI	YATR	7 cut(s)	44, 104, 213, 236, 348, 369, 396
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	326, 334
FatI	CATG	3 cut(s)	234, 346, 367
FauI	CCCGC	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	6 cut(s)	10, 29, 231, 239, 247, 311
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	6 cut(s)	10, 29, 231, 239, 247, 311
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	6 cut(s)	10, 29, 231, 239, 247, 311
HaeIII	GGCC	2 cut(s)	173, 246
Hin1II	CATG	3 cut(s)	238, 350, 371
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	73, 104, 298
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	319, 373
Hpy8I	GTNNAC	3 cut(s)	73, 104, 298
HpyAV	CCTTC	4 cut(s)	49, 85, 109, 121
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	158, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 310
HpyF3I	CTNAG	2 cut(s)	79, 380
Hsp92II	CATG	3 cut(s)	238, 350, 371
Kzo9I	GATC	1 cut(s)	315
LpnPI	CCDG	2 cut(s)	66, 351
Lsp1109I	GCAGC	5 cut(s)	21, 40, 217, 250, 322
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	324
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	205, 370
MnlI	CCTC	5 cut(s)	45, 163, 236, 256, 348
MslI	CAYNNNNRTG	2 cut(s)	47, 180
MspA1I	CMGCKG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	116, 310
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	238, 350, 371
NspI	RCATGY	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	6 cut(s)	11, 30, 232, 240, 248, 312
Ple19I	CGATCG	1 cut(s)	318
PpuMI	RGGWCCY	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	36
PspPI	GGNCC	3 cut(s)	36, 172, 335
PspPPI	RGGWCCY	1 cut(s)	36
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	2 cut(s)	47, 180
SatI	GCNGC	6 cut(s)	10, 29, 231, 239, 247, 311
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	3 cut(s)	36, 172, 335
SetI	ASST	6 cut(s)	41, 96, 112, 207, 267, 340
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	2 cut(s)	36, 335
SmiMI	CAYNNNNRTG	2 cut(s)	47, 180
SsiI	CCGC	2 cut(s)	247, 344
SspMI	CTAG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	376
TseI	GCWGC	5 cut(s)	9, 28, 230, 238, 310
TspDTI	ATGAA	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	36, 335
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.