Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Forward (+)

50353260 .. 50360266

Gene Structure 7007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTGCAGCTTTGGCTTCAAAGTGTTCCCGTGTGGGCAGTTCGTTTTTGGGGGCCCTTGGCAATAACTTGTCTGGCTTATTGAGCGCATCACATCAGATGACATGCAACACTTTCTTGTCTCAGCAACAAAGGACTTTCATACAAATGAGGACCATTCTCAAAGTCGTGGACAACTCAGGGGCGAAGAAGGTGATGTGCATACAAGCTTTGAAGGCGAGGAAGAAAGGGGCAAGATTGGGAGACACAATTGTTGCATCAGTAAAGGAGGCCCATCCAAATGGAAAAGTGAAGAAAGGAAAGGTAGTGTATGGTGTGGTCGTTCGTGCTGCCATGCAACGAGGCCGCTGTGATGGGAGTGAGGTCAAGTTTGATGACAATGCTGTCGTACTGGTTGACAAGCAGGGCCAGCCAATTGGGACTAGAGTATTTGGACCTGTCCCACACGAGTTGAGGAAGAAAAAGCATGTTAAGATTCTTAGTTTGGCAGAGCATATTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

167

Amino Acids

17.95

Weight (kDa)

10.33

Isoelectric Point (pI)

13.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	48 - 166	9e-47	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AciI	CCGC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	21, 214
AluBI	AGCT	2 cut(s)	11, 209
AluI	AGCT	2 cut(s)	11, 209
Alw26I	GTCTC	2 cut(s)	126, 237
AoxI	GGCC	4 cut(s)	54, 270, 343, 406
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	5, 8, 329
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	6 cut(s)	54, 55, 153, 271, 406, 434
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	153, 434
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	20, 316
BccI	CCATC	2 cut(s)	282, 347
BcoDI	GTCTC	2 cut(s)	126, 237
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	4 cut(s)	6, 9, 330, 346
BlsI	GCNGC	4 cut(s)	7, 10, 331, 347
Bme18I	GGWCC	2 cut(s)	153, 434
BmgT120I	GGNCC	6 cut(s)	54, 55, 153, 271, 406, 434
BmiI	GGNNCC	2 cut(s)	55, 56
BmsI	GCATC	2 cut(s)	98, 266
BsaJI	CCNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	137, 192
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	20, 316
BshFI	GGCC	4 cut(s)	56, 272, 345, 408
BslFI	GGGAC	2 cut(s)	425, 433
BsmAI	GTCTC	2 cut(s)	126, 237
BsmFI	GGGAC	2 cut(s)	425, 433
BsnI	GGCC	4 cut(s)	56, 272, 345, 408
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	4 cut(s)	56, 272, 345, 408
BspCNI	CTCAG	2 cut(s)	136, 191
BspLI	GGNNCC	2 cut(s)	55, 56
BspMAI	CTGCAG	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	123, 178, 479
BstF5I	GGATG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	89
BstMAI	GTCTC	2 cut(s)	126, 237
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 84, 215, 409
BstNSI	RCATGY	2 cut(s)	108, 470
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	2 cut(s)	20, 316
BstXI	CCANNNNNNTGG	2 cut(s)	281, 416
BsuRI	GGCC	4 cut(s)	56, 272, 345, 408
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	410
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	6 cut(s)	54, 55, 153, 271, 406, 434
Csp6I	GTAC	1 cut(s)	389
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	3 cut(s)	105, 334, 467
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	3 cut(s)	123, 178, 479
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	153, 434
EcoO109I	RGGNCCY	2 cut(s)	54, 55
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	108, 337, 470
FaiI	YATR	7 cut(s)	106, 143, 203, 312, 335, 468, 495
FaqI	GGGAC	2 cut(s)	425, 433
FatI	CATG	3 cut(s)	104, 333, 466
Fnu4HI	GCNGC	4 cut(s)	6, 9, 330, 346
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	4 cut(s)	6, 9, 330, 346
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	4 cut(s)	6, 9, 330, 346
HaeIII	GGCC	4 cut(s)	56, 272, 345, 408
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	108, 337, 470
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	475
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	172, 397
Hpy188I	TCNGA	1 cut(s)	99
Hpy8I	GTNNAC	2 cut(s)	172, 397
HpyAV	CCTTC	2 cut(s)	184, 208
HpyCH4V	TGCA	5 cut(s)	8, 108, 201, 257, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 84, 215, 409
HpyF3I	CTNAG	3 cut(s)	123, 178, 479
Hsp92II	CATG	3 cut(s)	108, 337, 470
HspAI	GCGC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	60, 165, 377, 389, 422, 450
Lsp1109I	GCAGC	2 cut(s)	20, 316
LweI	GCATC	2 cut(s)	98, 266
MaeI	CTAG	1 cut(s)	423
MboII	GAAGA	4 cut(s)	199, 235, 304, 469
MfeI	CAATTG	2 cut(s)	249, 414
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	2 cut(s)	249, 414
MnlI	CCTC	6 cut(s)	144, 213, 262, 335, 355, 447
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	146, 279
MspA1I	CMGCKG	1 cut(s)	348
MunI	CAATTG	2 cut(s)	249, 414
MwoI	GCNNNNNNNGC	4 cut(s)	14, 84, 215, 409
NlaIII	CATG	3 cut(s)	108, 337, 470
NlaIV	GGNNCC	2 cut(s)	55, 56
NspI	RCATGY	2 cut(s)	108, 470
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	4 cut(s)	7, 10, 331, 347
PspN4I	GGNNCC	2 cut(s)	55, 56
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	6 cut(s)	54, 55, 153, 271, 406, 434
PstI	CTGCAG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	146, 279
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	6, 9, 330, 346
Sau96I	GGNCC	6 cut(s)	54, 55, 153, 271, 406, 434
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	6 cut(s)	13, 195, 211, 306, 366, 439
SfaNI	GCATC	2 cut(s)	98, 266
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	153, 434
SmiMI	CAYNNNNRTG	2 cut(s)	146, 279
Sse9I	AATT	2 cut(s)	249, 414
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	58
TasI	AATT	2 cut(s)	249, 414
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseI	GCWGC	3 cut(s)	5, 8, 329
TspDTI	ATGAA	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	153, 434
XceI	RCATGY	2 cut(s)	108, 470
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.