Rorug01G0079000

Belongs to the universal ribosomal protein uL14 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
12872041 .. 12873223
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0079000.1

Sequence Viewer

Length: 1005 bp
ATGGTCCATGAGAAGAAGCTGGTCTTGAAAGTATCCGATTGGCTTAGAGTCTATGACGACGGCTCTGTCGACCGGACATGGAGAGGACCTCCTCAGATCAGTTACTTATTGGAGCCTGTTCCACCTCACCAGGAATTCATTAACGGAGTTGCCACCAAAGACGTGGTTATTGACAACACGTCCGGCCATCGTGTCCGAATATATCTACCAGAGAGAAAGCCAGATGATAACAACGAGACTAAGCTACCCATAATCCTTCATTTCCATGGAGGGGGCTTTTGCTTTTGCGAAGCGGATTGGTACATGTACTACCATATCTACACCAAAATTGCACGTGCGGCCAACGCCATTGTTGTCTCCCCCTATCTAAGACAAGCACCCGAGCACCGCCTCCCAGCTCAGATGGACGACGGCTTTTCTGCTCTCCTCTGGCTCCGATCTCTGGCTCAAGCTGATTCTCATGAACCGTGGCTAAATGACCATACCGATTTGAACCGCATTTTCCTCATAGGGGATAGTTCAGGAGGAAACATAGTCCATGAAGTGGCTGCTCGAGCAGGGAATGCGGATTTGGGTAAGTTCAAGTTATCCGGTGGGATTCTTATCCAACCTGGCTTTGTCCGGGAAACGAGGAGCAAGTCGGAGTTGGAACAGCCCCAGTCTTCGTTTTTTAGTGTAGATATGGCGGACAAGTTATTCAGCTTGTCACTTCCGGTGGGATCAACCAAGGACCATCCGATTACGTGTCCGATGGGTTCATTGGCCCCGCCTTTGGATGGTCTGAAGCTGCCTCCGATGCTTGTTTTCGTTGGGGAGATTGACGTCTTTAAGGACACTCAGGTGGAATACTATGAGGCCATGAAGAAGGCTAACCAGGATGTGCAGCTTTTGAGTTTCCCCGGAATGGGTCATGCTTTTTATCTTTCGGCGGAAATGAAGCCAGGCACGTCTGTCCAAACTGCGAGTCTAGTTTCTGAGATCACAGAATTTGTGAAGAAGCATTGA

Protein Analysis

334

Amino Acids

37.38

Weight (kDa)

5.9

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 76 - 184 1.1e-08 BD-FAE
Abhydrolase_3 PF07859 85 - 307 3.1e-52 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AatII GACGTC 1 cut(s) 825
AccB7I CCANNNNNTGG 1 cut(s) 544
AccI GTMKAC 1 cut(s) 69
AciI CCGC 8 cut(s) 293, 338, 388, 496, 566, 686, 767, 929
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 2 cut(s) 184, 339
AcsI RAATTY 2 cut(s) 134, 986
AcuI CTGAAG 1 cut(s) 803
AcvI CACGTG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 2 cut(s) 302, 308
AfiI CCNNNNNNNGG 8 cut(s) 271, 442, 511, 544, 772, 776, 904, 905
AflIII ACRYGT 3 cut(s) 177, 303, 743
AgsI TTSAA 3 cut(s) 28, 493, 583
AhdI GACNNNNNGTC 1 cut(s) 178
AjiI CACGTC 3 cut(s) 163, 180, 948
AjnI CCWGG 4 cut(s) 129, 610, 873, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AleI CACNNNNGTG 1 cut(s) 839
AluBI AGCT 7 cut(s) 19, 244, 398, 452, 702, 787, 886
AluI AGCT 7 cut(s) 19, 244, 398, 452, 702, 787, 886
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 2 cut(s) 230, 361
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 2 cut(s) 380, 552
AoxI GGCC 4 cut(s) 184, 339, 762, 855
ApeKI GCWGC 3 cut(s) 548, 787, 883
ApoI RAATTY 2 cut(s) 134, 986
ArsI GACNNNNNNTTYG 2 cut(s) 949, 981
AspS9I GGNCC 4 cut(s) 4, 86, 730, 763
AsuC2I CCSGG 2 cut(s) 623, 900
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 2 cut(s) 380, 552
AvaII GGWCC 3 cut(s) 4, 86, 730
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 535, 774, 895
BccI CCATC 5 cut(s) 195, 397, 741, 745, 770
BceAI ACGGC 2 cut(s) 76, 427
BciT130I CCWGG 4 cut(s) 131, 612, 875, 942
BciVI GTATCC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 623, 900
BcoDI GTCTC 2 cut(s) 230, 361
BfaI CTAG 1 cut(s) 968
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 4 cut(s) 339, 549, 788, 884
BlsI GCNGC 4 cut(s) 340, 550, 789, 885
Bme1390I CCNGG 6 cut(s) 131, 612, 623, 875, 900, 942
Bme18I GGWCC 3 cut(s) 4, 86, 730
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 2 cut(s) 380, 552
BmgBI CACGTC 3 cut(s) 163, 180, 948
BmgT120I GGNCC 4 cut(s) 4, 86, 730, 763
BmiI GGNNCC 3 cut(s) 114, 434, 765
BmrFI CCNGG 6 cut(s) 131, 612, 623, 875, 900, 942
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpuEI CTTGAG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 623, 900
BsaAI YACGTR 2 cut(s) 335, 744
BsaBI GATNNNNATC 1 cut(s) 602
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 4 cut(s) 265, 467, 726, 898
BsaWI WCCGGW 3 cut(s) 72, 590, 712
Bsc4I CCNNNNNNNGG 8 cut(s) 271, 442, 511, 544, 772, 776, 904, 905
Bse1I ACTGG 1 cut(s) 658
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 4 cut(s) 131, 612, 875, 942
BseDI CCNNGG 4 cut(s) 265, 467, 726, 898
BseGI GGATG 3 cut(s) 733, 781, 883
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 8 cut(s) 271, 442, 511, 544, 772, 776, 904, 905
BseMII CTCAG 4 cut(s) 107, 413, 851, 966
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 3 cut(s) 81, 416, 646
BseXI GCAGC 3 cut(s) 535, 774, 895
BseYI CCCAGC 1 cut(s) 394
BsgI GTGCAG 1 cut(s) 902
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 186, 341, 764, 857
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 2 cut(s) 380, 552
BsiSI CCGG 6 cut(s) 73, 183, 591, 622, 713, 900
BslI CCNNNNNNNGG 8 cut(s) 271, 442, 511, 544, 772, 776, 904, 905
BsmAI GTCTC 2 cut(s) 230, 361
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 4 cut(s) 186, 341, 764, 857
BsoBI CYCGRG 2 cut(s) 380, 552
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 4 cut(s) 96, 437, 719, 978
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 8 cut(s) 293, 338, 388, 496, 566, 686, 767, 929
BspANI GGCC 4 cut(s) 186, 341, 764, 857
BspCNI CTCAG 4 cut(s) 106, 412, 850, 967
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 114, 434, 765
BspPI GGATC 1 cut(s) 727
BsrI ACTGG 1 cut(s) 658
BssECI CCNNGG 4 cut(s) 265, 467, 726, 898
BssMI GATC 4 cut(s) 96, 437, 719, 978
BssNI GRCGYC 1 cut(s) 822
BssT1I CCWWGG 2 cut(s) 265, 726
Bst2UI CCWGG 4 cut(s) 131, 612, 875, 942
Bst4CI ACNGT 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 563
BstBAI YACGTR 2 cut(s) 335, 744
BstDEI CTNAG 7 cut(s) 44, 93, 240, 368, 399, 837, 975
BstDSI CCRYGG 2 cut(s) 265, 467
BstF5I GGATG 3 cut(s) 733, 781, 883
BstKTI GATC 4 cut(s) 99, 440, 722, 981
BstMAI GTCTC 2 cut(s) 230, 361
BstMBI GATC 4 cut(s) 96, 437, 719, 978
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 338, 344, 554, 563, 796
BstNI CCWGG 4 cut(s) 131, 612, 875, 942
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 6 cut(s) 129, 610, 621, 873, 898, 940
BstV1I GCAGC 3 cut(s) 535, 774, 895
BstV2I GAAGAC 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 4 cut(s) 186, 341, 764, 857
BtgI CCRYGG 2 cut(s) 265, 467
BtrI CACGTC 3 cut(s) 163, 180, 948
BtsCI GGATG 3 cut(s) 733, 781, 883
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 4 cut(s) 4, 86, 730, 763
Csp6I GTAC 2 cut(s) 301, 307
CviAII CATG 8 cut(s) 8, 78, 266, 304, 461, 539, 859, 911
CviQI GTAC 2 cut(s) 301, 307
DdeI CTNAG 7 cut(s) 44, 93, 240, 368, 399, 837, 975
DpnI GATC 4 cut(s) 98, 439, 721, 980
DpnII GATC 4 cut(s) 96, 437, 719, 978
DrdI GACNNNNNNGTC 1 cut(s) 65
DriI GACNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 184, 339
Eam1105I GACNNNNNGTC 1 cut(s) 178
EciI GGCGGA 2 cut(s) 701, 944
Eco130I CCWWGG 2 cut(s) 265, 726
Eco47I GGWCC 3 cut(s) 4, 86, 730
Eco57I CTGAAG 1 cut(s) 803
Eco72I CACGTG 1 cut(s) 335
Eco88I CYCGRG 2 cut(s) 380, 552
EcoO109I RGGNCCY 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 4 cut(s) 129, 610, 873, 940
EcoT14I CCWWGG 2 cut(s) 265, 726
ErhI CCWWGG 2 cut(s) 265, 726
FaeI CATG 8 cut(s) 11, 81, 269, 307, 464, 542, 862, 914
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 8 cut(s) 7, 77, 265, 303, 460, 538, 858, 910
FauI CCCGC 1 cut(s) 774
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 339, 549, 788, 884
FokI GGATG 3 cut(s) 720, 788, 890
Fsp4HI GCNGC 4 cut(s) 339, 549, 788, 884
FspBI CTAG 1 cut(s) 968
GluI GCNGC 4 cut(s) 339, 549, 788, 884
GsaI CCCAGC 1 cut(s) 398
HaeIII GGCC 4 cut(s) 186, 341, 764, 857
HapII CCGG 6 cut(s) 73, 183, 591, 622, 713, 900
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 8 cut(s) 11, 81, 269, 307, 464, 542, 862, 914
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 4 cut(s) 48, 455, 598, 964
HpaII CCGG 6 cut(s) 73, 183, 591, 622, 713, 900
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 25, 461, 522
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 62, 413
HpyAV CCTTC 2 cut(s) 266, 859
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 6 cut(s) 162, 179, 334, 743, 822, 947
HpyCH4V TGCA 2 cut(s) 332, 883
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 344, 554, 563, 796
HpyF3I CTNAG 7 cut(s) 44, 93, 240, 368, 399, 837, 975
HpySE526I ACGT 6 cut(s) 162, 179, 334, 743, 822, 947
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 8 cut(s) 11, 81, 269, 307, 464, 542, 862, 914
Kzo9I GATC 4 cut(s) 96, 437, 719, 978
LmnI GCTCC 3 cut(s) 112, 438, 633
Lsp1109I GCAGC 3 cut(s) 535, 774, 895
LweI GCATC 1 cut(s) 786
MaeI CTAG 1 cut(s) 968
MaeII ACGT 6 cut(s) 162, 179, 334, 743, 822, 947
MaeIII GTNAC 2 cut(s) 101, 705
MalI GATC 4 cut(s) 98, 439, 721, 980
MboI GATC 4 cut(s) 96, 437, 719, 978
MboII GAAGA 3 cut(s) 25, 654, 874
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 3 cut(s) 134, 327, 986
MlyI GAGTC 2 cut(s) 57, 973
MmeI TCCRAC 3 cut(s) 621, 627, 631
MseI TTAA 2 cut(s) 141, 828
MslI CAYNNNNRTG 2 cut(s) 264, 839
MspI CCGG 6 cut(s) 73, 183, 591, 622, 713, 900
MspR9I CCNGG 6 cut(s) 131, 612, 623, 875, 900, 942
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 4 cut(s) 131, 612, 875, 942
MwoI GCNNNNNNNGC 5 cut(s) 338, 344, 554, 563, 796
NciI CCSGG 2 cut(s) 623, 900
NcoI CCATGG 1 cut(s) 265
NdeII GATC 4 cut(s) 96, 437, 719, 978
NlaIII CATG 8 cut(s) 11, 81, 269, 307, 464, 542, 862, 914
NlaIV GGNNCC 3 cut(s) 114, 434, 765
NmuCI GTSAC 1 cut(s) 705
NspI RCATGY 1 cut(s) 307
OliI CACNNNNGTG 1 cut(s) 839
PaeR7I CTCGAG 1 cut(s) 552
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 455, 598
PflMI CCANNNNNTGG 1 cut(s) 544
PfoI TCCNGGA 1 cut(s) 621
PkrI GCNGC 4 cut(s) 340, 550, 789, 885
PleI GAGTC 2 cut(s) 56, 972
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
PpsI GAGTC 2 cut(s) 56, 972
Ppu21I YACGTR 2 cut(s) 335, 744
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 4 cut(s) 129, 610, 873, 940
PspCI CACGTG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 394
PspGI CCWGG 4 cut(s) 129, 610, 873, 940
PspN4I GGNNCC 3 cut(s) 114, 434, 765
PspPI GGNCC 4 cut(s) 4, 86, 730, 763
PspPPI RGGWCCY 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 552
RsaI GTAC 2 cut(s) 302, 308
RsaNI GTAC 2 cut(s) 301, 307
RseI CAYNNNNRTG 2 cut(s) 264, 839
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 141, 828
SatI GCNGC 4 cut(s) 339, 549, 788, 884
Sau3AI GATC 4 cut(s) 96, 437, 719, 978
Sau96I GGNCC 4 cut(s) 4, 86, 730, 763
SchI GAGTC 2 cut(s) 57, 973
ScrFI CCNGG 6 cut(s) 131, 612, 623, 875, 900, 942
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 1 cut(s) 786
Sfr274I CTCGAG 1 cut(s) 552
SinI GGWCC 3 cut(s) 4, 86, 730
SlaI CTCGAG 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 264, 839
SmlI CTYRAG 2 cut(s) 447, 552
SmoI CTYRAG 2 cut(s) 447, 552
Sse9I AATT 3 cut(s) 134, 327, 986
SsiI CCGC 8 cut(s) 293, 338, 388, 496, 566, 686, 767, 929
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 6 cut(s) 129, 610, 621, 873, 898, 940
StyI CCWWGG 2 cut(s) 265, 726
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 6 cut(s) 165, 182, 337, 746, 825, 950
TaqI TCGA 2 cut(s) 69, 553
TasI AATT 3 cut(s) 134, 327, 986
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 2 cut(s) 455, 598
Tru1I TTAA 2 cut(s) 141, 828
Tru9I TTAA 2 cut(s) 141, 828
TseFI GTSAC 1 cut(s) 705
TseI GCWGC 3 cut(s) 548, 787, 883
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 7 cut(s) 127, 248, 477, 555, 747, 875, 950
TspGWI ACGGA 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 544
VpaK11BI GGWCC 3 cut(s) 4, 86, 730
XapI RAATTY 2 cut(s) 134, 986
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 1 cut(s) 968
ZraI GACGTC 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.