Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Reverse (-)

16053430 .. 16055068

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G007610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGCAACAAAGGACTTTCATACAAATGAGGACCATTCTCAAAGTCGTGGACAACTCAGGGGCGAAGAAGGTGATGTGCATACAAGCTTTGAAGGCGAGAAAGAAAGGGGCAAGATTGGGAGACACAATTGTTGCATCAGTCAAGGAGGCCCATCCAAATGGAAAAGTGAAGAAAGGAAAGGTAGTGTATGGTGTGGTTGTTCGTGCTGCCATGCAACGTGGCCGCTGTGATGGGAGTGAGGTCAAGTTTGATGACAATGCTGTCGTACTGGTTGACAAGCAGGGCCAGCCAATTGGGACTAGAGTATTTGGACCTGTCCCACACGAGTTGAGAAAGAAAAAGCATGTTAAGATTCTTAGTTTGGCAGAGCATATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

10.4

Isoelectric Point (pI)

10.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	8 - 126	3.4e-47	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AciI	CCGC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	223
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	3 cut(s)	150, 223, 286
ApeKI	GCWGC	2 cut(s)	4, 209
AspS9I	GGNCC	4 cut(s)	33, 151, 286, 314
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	33, 314
BauI	CACGAG	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	16, 196
BccI	CCATC	2 cut(s)	162, 227
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	5, 210, 226
BlsI	GCNGC	3 cut(s)	6, 211, 227
Bme18I	GGWCC	2 cut(s)	33, 314
BmgT120I	GGNCC	4 cut(s)	33, 151, 286, 314
BmsI	GCATC	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	16, 196
BshFI	GGCC	3 cut(s)	152, 225, 288
BslFI	GGGAC	2 cut(s)	305, 313
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	305, 313
BsnI	GGCC	3 cut(s)	152, 225, 288
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	3 cut(s)	152, 225, 288
BspCNI	CTCAG	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	58, 359
BstF5I	GGATG	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 289
BstNSI	RCATGY	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	16, 196
BstXI	CCANNNNNNTGG	2 cut(s)	161, 296
BsuRI	GGCC	3 cut(s)	152, 225, 288
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	33, 151, 286, 314
Csp6I	GTAC	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	2 cut(s)	214, 347
CviJI	RGCY	5 cut(s)	89, 152, 225, 288, 292
CviKI_1	RGCY	5 cut(s)	89, 152, 225, 288, 292
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	58, 359
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	33, 314
FaeI	CATG	2 cut(s)	217, 350
FaiI	YATR	6 cut(s)	23, 83, 192, 215, 348, 375
FaqI	GGGAC	2 cut(s)	305, 313
FatI	CATG	2 cut(s)	213, 346
Fnu4HI	GCNGC	3 cut(s)	5, 210, 226
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	5, 210, 226
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	5, 210, 226
HaeIII	GGCC	3 cut(s)	152, 225, 288
Hin1II	CATG	2 cut(s)	217, 350
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	52, 277
Hpy8I	GTNNAC	2 cut(s)	52, 277
HpyAV	CCTTC	2 cut(s)	64, 88
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	4, 81, 137, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 289
HpyF3I	CTNAG	2 cut(s)	58, 359
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	217, 350
LpnPI	CCDG	5 cut(s)	45, 257, 269, 302, 330
Lsp1109I	GCAGC	2 cut(s)	16, 196
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	220
MboII	GAAGA	2 cut(s)	79, 184
MfeI	CAATTG	2 cut(s)	129, 294
MluCI	AATT	2 cut(s)	129, 294
MnlI	CCTC	3 cut(s)	24, 142, 235
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	2 cut(s)	26, 159
MspA1I	CMGCKG	1 cut(s)	228
MunI	CAATTG	2 cut(s)	129, 294
MwoI	GCNNNNNNNGC	2 cut(s)	95, 289
NlaIII	CATG	2 cut(s)	217, 350
NspI	RCATGY	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	3 cut(s)	6, 211, 227
PspPI	GGNCC	4 cut(s)	33, 151, 286, 314
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	2 cut(s)	26, 159
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	5, 210, 226
Sau96I	GGNCC	4 cut(s)	33, 151, 286, 314
SetI	ASST	6 cut(s)	75, 91, 186, 223, 246, 319
SfaNI	GCATC	1 cut(s)	146
SinI	GGWCC	2 cut(s)	33, 314
SmiMI	CAYNNNNRTG	2 cut(s)	26, 159
Sse9I	AATT	2 cut(s)	129, 294
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	223
TasI	AATT	2 cut(s)	129, 294
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	2 cut(s)	4, 209
TspDTI	ATGAA	1 cut(s)	10
VpaK11BI	GGWCC	2 cut(s)	33, 314
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.