Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009197

Physical Location & Seq

Genomic Coordinates Reverse (-)

5806022 .. 5807241

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTCACGGGGTTCTGCAACTGTTTGCTTATCACTCACTGCAATCTGTTCAATCTGCTGGAAACAAACCTAGTTGGTCGTTCGTTGTTGGGGGGCCTCGGCAACAACTTGTCTGGCTTATTGAGTACATCACATGAGACGACAAGCAGCACTTTCTTATCTCAGCAGCAAAGGACCTTCATACAGATGAGGACTGTTCTCAAAGTCGTGGACAATTCAGGGGCGAAAAAGGTGATGTGTATACAAGCTTTGAAGGCAAATAAGAAGGGAGCAAGATTGGGAGACACCATTGTTGCATCAGTAAAGGAGGCCCATCCGAATGGAAAAGTGAAGAAAGGAAAGGTTGTTTATGGTGTGGTTGTTCGTGCTGCCATGCAGCGAGGCCGTTGTGATGGGAGTGAGGTCAAGTTTGATGACAATGCTGTGGTACTCGTCGACAAGCAAGGGCAGCCGATTGGGACAAGAGTATTTGGACCCGTCCCGCACGAGTTGAGGAAGAAAAAGCATGTCAAGATTCTTAGTTTGGCAGAGCATATTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000313 GO:0000315 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0007275 GO:0008150 GO:0009553 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009888 GO:0009908 GO:0010033 GO:0010941 GO:0014070 GO:0015934 GO:0019843 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0060548 GO:0061458 GO:0065007 GO:0070013 GO:0070180 GO:0080060 GO:0090567 GO:0097159 GO:0098798 GO:0099402 GO:1901363 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

181

Amino Acids

19.54

Weight (kDa)

9.95

Isoelectric Point (pI)

15.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	61 - 179	1.4e-46	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46160 AT5G46160
fragaria_vesca	FvH4_2g09650 FvH4_2g09650
malus_domestica	MD05G1061000.v1.1 MD10G1068800.v1.1
prunus_persica	Prupe.1G558000_v2.0.a1 Prupe.1G558000_v2.0.a1
pyrus_communis	pycom05g05190 pycom10g05490
rosa_chinensis	RchiOBHm_Chr1g0329391
rosa_laevigata	RLG00000029897
rosa_multiflora	Rmu_sc0000453.1_g000021
rosa_roxburghii	Rroxscaffold_4G00321160
rosa_rugosa	Rorug01G0079000 Rorug01G0079100 Rorug01G0079200.1
rosa_samantha	Rh1AG097600 Rh1BG077800 Rh1CG094200 Rh1DG100900
rosa_wichuraiana	Rw1G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	241, 435
AciI	CCGC	1 cut(s)	482
AfaI	GTAC	2 cut(s)	127, 429
AgsI	TTSAA	2 cut(s)	52, 253
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	131, 276
AoxI	GGCC	3 cut(s)	94, 309, 382
ApeKI	GCWGC	5 cut(s)	147, 166, 368, 376, 448
AspS9I	GGNCC	4 cut(s)	94, 174, 310, 473
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	174, 473
BauI	CACGAG	1 cut(s)	485
BbvI	GCAGC	5 cut(s)	159, 178, 355, 388, 460
BccI	CCATC	2 cut(s)	321, 386
BceAI	ACGGC	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	131, 276
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	5 cut(s)	148, 167, 369, 377, 449
BlsI	GCNGC	5 cut(s)	149, 168, 370, 378, 450
Bme18I	GGWCC	2 cut(s)	174, 473
BmgT120I	GGNCC	4 cut(s)	94, 174, 310, 473
BmiI	GGNNCC	2 cut(s)	95, 475
BmsI	GCATC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	176
BseXI	GCAGC	5 cut(s)	159, 178, 355, 388, 460
BshFI	GGCC	3 cut(s)	96, 311, 384
BslFI	GGGAC	2 cut(s)	464, 472
BsmAI	GTCTC	2 cut(s)	131, 276
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	464, 472
BsnI	GGCC	3 cut(s)	96, 311, 384
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	3 cut(s)	96, 311, 384
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	95, 475
BssECI	CCNNGG	1 cut(s)	97
BssNAI	GTATAC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	485
Bst1107I	GTATAC	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	23, 196
BstDEI	CTNAG	2 cut(s)	162, 518
BstF5I	GGATG	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	131, 276
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 448
BstNSI	RCATGY	1 cut(s)	509
BstV1I	GCAGC	5 cut(s)	159, 178, 355, 388, 460
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstZ17I	GTATAC	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	96, 311, 384
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	94, 174, 310, 473
Csp6I	GTAC	2 cut(s)	126, 428
CviAII	CATG	3 cut(s)	134, 373, 506
CviJI	RGCY	6 cut(s)	96, 117, 248, 311, 384, 451
CviKI_1	RGCY	6 cut(s)	96, 117, 248, 311, 384, 451
CviQI	GTAC	2 cut(s)	126, 428
DdeI	CTNAG	2 cut(s)	162, 518
Eco47I	GGWCC	2 cut(s)	174, 473
EcoO109I	RGGNCCY	2 cut(s)	94, 174
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	137, 376, 509
FaiI	YATR	7 cut(s)	135, 182, 242, 351, 374, 507, 534
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	2 cut(s)	464, 472
FatI	CATG	3 cut(s)	133, 372, 505
FauI	CCCGC	1 cut(s)	489
FblI	GTMKAC	2 cut(s)	241, 435
Fnu4HI	GCNGC	5 cut(s)	148, 167, 369, 377, 449
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	148, 167, 369, 377, 449
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	5 cut(s)	148, 167, 369, 377, 449
HaeIII	GGCC	3 cut(s)	96, 311, 384
Hin1II	CATG	3 cut(s)	137, 376, 509
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	1 cut(s)	514
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	4 cut(s)	6, 211, 242, 436
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	4 cut(s)	6, 211, 242, 436
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	187, 247, 259
HpyCH4III	ACNGT	2 cut(s)	23, 196
HpyCH4V	TGCA	4 cut(s)	18, 42, 296, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 448
HpyF3I	CTNAG	2 cut(s)	162, 518
Hsp92II	CATG	3 cut(s)	137, 376, 509
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	3 cut(s)	44, 99, 204
Lsp1109I	GCAGC	5 cut(s)	159, 178, 355, 388, 460
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	71
MboII	GAAGA	2 cut(s)	343, 508
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	6 cut(s)	107, 183, 301, 374, 394, 486
MslI	CAYNNNNRTG	2 cut(s)	185, 318
MwoI	GCNNNNNNNGC	2 cut(s)	254, 448
NlaIII	CATG	3 cut(s)	137, 376, 509
NlaIV	GGNNCC	2 cut(s)	95, 475
NmeAIII	GCCGAG	1 cut(s)	78
NspI	RCATGY	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	149, 168, 370, 378, 450
PpuMI	RGGWCCY	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	95, 475
PspPI	GGNCC	4 cut(s)	94, 174, 310, 473
PspPPI	RGGWCCY	1 cut(s)	174
RsaI	GTAC	2 cut(s)	127, 429
RsaNI	GTAC	2 cut(s)	126, 428
RseI	CAYNNNNRTG	2 cut(s)	185, 318
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	5 cut(s)	148, 167, 369, 377, 449
Sau96I	GGNCC	4 cut(s)	94, 174, 310, 473
SetI	ASST	6 cut(s)	72, 179, 234, 250, 345, 405
SfaNI	GCATC	1 cut(s)	305
SinI	GGWCC	2 cut(s)	174, 473
SmiMI	CAYNNNNRTG	2 cut(s)	185, 318
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	23, 196
TaqI	TCGA	1 cut(s)	435
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	514
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	5 cut(s)	147, 166, 368, 376, 448
TspDTI	ATGAA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	174, 473
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	2 cut(s)	241, 435
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.