AT5G46690

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015345
Physical Location & Seq
Forward (+)
18945543 .. 18947637
2095 bp
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UTR
Exon/CDS
Intron
AT5G46690.1

Sequence Viewer

Length: 984 bp
ATGACTCTAGAAGCTTTATCATCAAACGGTCTTTTAAACTTTTTGCTCTCTGAAACTCTTTCACCAACTCCATTCAAGTCTCTCGTCGATCTCGAGCCATTGCCGGAAAATGATGTCATCATATCGAAGAACACAATTTCGGAGATATCTAATCAAGAACCGCCACCACAGCGACAACCACCAGCTACGAATCGAGGGAAGAAGCGGCGGAGGAGGAAGCCTAGGGTTTGCAAAAACGAGGAAGAAGCTGAGAATCAACGAATGACTCACATTGCCGTCGAAAGAAATCGAAGAAGACAAATGAATCAACATCTCTCTGTCTTGCGATCTCTCATGCCTCAACCTTTTGCTCACAAGGGTGATCAAGCTTCAATAGTTGGTGGAGCCATAGATTTCATCAAAGAACTTGAACACAAATTACTATCTCTTGAAGCTCAAAAACATCATAATGCTAAATTAAACCAGTCGGTTACTTCTTCAACAAGTCAAGACTCAAATGGTGAACAAGAGAATCCTCATCAACCATCTTCACTATCTCTATCGCAGTTCTTTCTTCATTCATACGATCCGAGCCAAGAGAATAGGAACGGCTCAACAAGCTCGGTGAAAACCCCTATGGAAGATCTTGAGGTGACTCTAATCGAAACTCATGCTAACATCAGAATCTTGTCGAGAAGAAGAGGTTTCCGGTGGAGCACGTTGGCCACCACCAAACCGCCGCAGCTTTCGAAGCTGGTGGCTTCTCTACAATCGCTGTCCCTCTCCATTCTTCACCTTAGTGTCACAACATTGGACAATTATGCTATTTACTCCATCAGCGCTAAGGTGGAAGAGAGTTGCCAGCTAAGTTCAGTAGATGACATTGCAGGAGCAGTTCACCACATGCTAAGTATCATTGAAGAGGAGCCTTTTTGTTGCTCATCAATGTCAGAATTACCATTTGACTTCTCTTTGAATCACTCAAATGTCACTCATTCTCTCTGA

Protein Analysis

327

Amino Acids

36.65

Weight (kDa)

6.54

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 86 - 137 1.3e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 161, 205, 208, 716, 719
AclWI GGATC 1 cut(s) 560
AcoI YGGCCR 1 cut(s) 702
AfeI AGCGCT 1 cut(s) 820
AgsI TTSAA 7 cut(s) 76, 372, 410, 431, 480, 899, 955
AleI CACNNNNGTG 2 cut(s) 357, 777
AluBI AGCT 9 cut(s) 14, 185, 248, 368, 434, 600, 724, 733, 844
AluI AGCT 9 cut(s) 14, 185, 248, 368, 434, 600, 724, 733, 844
Alw21I GWGCWC 1 cut(s) 698
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 820
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 721
AspA2I CCTAGG 1 cut(s) 221
AspLEI GCGC 1 cut(s) 821
AsuHPI GGTGA 7 cut(s) 54, 371, 512, 616, 643, 764, 869
AsuII TTCGAA 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 221
BalI TGGCCA 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 698
BbvI GCAGC 1 cut(s) 733
BccI CCATC 2 cut(s) 532, 821
BceAI ACGGC 2 cut(s) 260, 604
BcgI CGANNNNNNTGC 2 cut(s) 632, 666
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 8, 222
BfoI RGCGCY 1 cut(s) 822
BglII AGATCT 1 cut(s) 622
BisI GCNGC 3 cut(s) 206, 719, 722
BlnI CCTAGG 1 cut(s) 221
BlsI GCNGC 3 cut(s) 207, 720, 723
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 385, 906
BpiI GAAGAC 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 822
Bpu14I TTCGAA 1 cut(s) 728
BpuEI CTTGAG 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 687
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 3 cut(s) 98, 270, 861
BseDI CCNNGG 1 cut(s) 221
BseMI GCAATG 3 cut(s) 98, 270, 861
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 226, 917
BseXI GCAGC 1 cut(s) 733
BshFI GGCC 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 698
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 104, 688
BslFI GGGAC 1 cut(s) 742
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 742
BsnI GGCC 1 cut(s) 704
BsoBI CYCGRG 1 cut(s) 92
Bsp119I TTCGAA 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 698
Bsp143I GATC 5 cut(s) 88, 326, 361, 565, 622
BspACI CCGC 5 cut(s) 161, 205, 208, 716, 719
BspANI GGCC 1 cut(s) 704
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 385, 906
BspPI GGATC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 728
BsrDI GCAATG 3 cut(s) 98, 270, 861
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 5 cut(s) 88, 326, 361, 565, 622
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 3 cut(s) 673, 825, 894
BstBI TTCGAA 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 842
BstDEI CTNAG 5 cut(s) 249, 776, 822, 845, 887
BstH2I RGCGCY 1 cut(s) 822
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 5 cut(s) 91, 329, 364, 568, 625
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 5 cut(s) 88, 326, 361, 565, 622
BstMWI GCNNNNNNNGC 3 cut(s) 169, 597, 730
BstNSI RCATGY 1 cut(s) 886
BstV1I GCAGC 1 cut(s) 733
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 842
CfoI GCGC 1 cut(s) 821
CviAII CATG 3 cut(s) 334, 650, 883
DdeI CTNAG 5 cut(s) 249, 776, 822, 845, 887
DpnI GATC 5 cut(s) 90, 328, 363, 567, 624
DpnII GATC 5 cut(s) 88, 326, 361, 565, 622
DraI TTTAAA 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 3 cut(s) 673, 825, 894
EarI CTCTTC 3 cut(s) 673, 825, 894
EciI GGCGGA 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 221
Eco32I GATATC 1 cut(s) 147
Eco47III AGCGCT 1 cut(s) 820
Eco88I CYCGRG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 337, 653, 886
FaiI YATR 9 cut(s) 122, 335, 389, 447, 562, 617, 651, 801, 884
FaqI GGGAC 1 cut(s) 742
FatI CATG 3 cut(s) 333, 649, 882
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 206, 719, 722
Fsp4HI GCNGC 3 cut(s) 206, 719, 722
FspBI CTAG 2 cut(s) 8, 222
GlaI GCGC 1 cut(s) 820
GluI GCNGC 3 cut(s) 206, 719, 722
HaeII RGCGCY 1 cut(s) 822
HaeIII GGCC 1 cut(s) 704
HapII CCGG 2 cut(s) 104, 688
HhaI GCGC 1 cut(s) 821
Hin1II CATG 3 cut(s) 337, 653, 886
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HindIII AAGCTT 2 cut(s) 12, 366
HpaII CCGG 2 cut(s) 104, 688
HphI GGTGA 7 cut(s) 54, 371, 512, 616, 643, 764, 869
Hpy166II GTNNAC 2 cut(s) 503, 877
Hpy188I TCNGA 6 cut(s) 52, 142, 570, 662, 931, 983
Hpy188III TCNNGA 7 cut(s) 8, 92, 155, 428, 488, 626, 672
Hpy8I GTNNAC 2 cut(s) 503, 877
Hpy99I CGWCG 2 cut(s) 89, 281
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 698
HpyCH4V TGCA 2 cut(s) 231, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 597, 730
HpyF3I CTNAG 5 cut(s) 249, 776, 822, 845, 887
HpySE526I ACGT 1 cut(s) 698
Hsp92II CATG 3 cut(s) 337, 653, 886
HspAI GCGC 1 cut(s) 819
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 88, 326, 361, 565, 622
LmnI GCTCC 4 cut(s) 383, 693, 869, 904
LpnPI CCDG 7 cut(s) 117, 195, 476, 701, 719, 852, 854
Lsp1109I GCAGC 1 cut(s) 733
MaeI CTAG 2 cut(s) 8, 222
MaeII ACGT 1 cut(s) 698
MaeIII GTNAC 4 cut(s) 469, 631, 781, 967
MalI GATC 5 cut(s) 90, 328, 363, 567, 624
MboI GATC 5 cut(s) 88, 326, 361, 565, 622
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 1 cut(s) 698
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 5 cut(s) 135, 416, 455, 796, 932
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 3 cut(s) 259, 485, 628
Mox20I TGGCCA 1 cut(s) 704
MscI TGGCCA 1 cut(s) 704
MseI TTAA 2 cut(s) 35, 458
MslI CAYNNNNRTG 4 cut(s) 357, 447, 777, 963
Msp20I TGGCCA 1 cut(s) 704
MspI CCGG 2 cut(s) 104, 688
MwoI GCNNNNNNNGC 3 cut(s) 169, 597, 730
NdeII GATC 5 cut(s) 88, 326, 361, 565, 622
NlaIII CATG 3 cut(s) 337, 653, 886
NlaIV GGNNCC 2 cut(s) 385, 906
NmuCI GTSAC 3 cut(s) 631, 781, 967
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 1 cut(s) 728
OliI CACNNNNGTG 2 cut(s) 357, 777
PaeR7I CTCGAG 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 6 cut(s) 190, 253, 304, 511, 663, 955
PkrI GCNGC 3 cut(s) 207, 720, 723
PleI GAGTC 3 cut(s) 259, 485, 628
PpsI GAGTC 3 cut(s) 259, 485, 628
PspN4I GGNNCC 2 cut(s) 385, 906
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PsuI RGATCY 1 cut(s) 622
RseI CAYNNNNRTG 4 cut(s) 357, 447, 777, 963
SaqAI TTAA 2 cut(s) 35, 458
SatI GCNGC 3 cut(s) 206, 719, 722
Sau3AI GATC 5 cut(s) 88, 326, 361, 565, 622
SchI GAGTC 3 cut(s) 259, 485, 628
SduI GDGCHC 1 cut(s) 698
Sfr274I CTCGAG 1 cut(s) 92
SfuI TTCGAA 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 4 cut(s) 357, 447, 777, 963
SmlI CTYRAG 2 cut(s) 92, 626
SmoI CTYRAG 2 cut(s) 92, 626
Sse9I AATT 5 cut(s) 135, 416, 455, 796, 932
SsiI CCGC 5 cut(s) 161, 205, 208, 716, 719
SspMI CTAG 2 cut(s) 8, 222
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 701
TaqI TCGA 9 cut(s) 87, 93, 125, 193, 279, 289, 642, 671, 728
TasI AATT 5 cut(s) 135, 416, 455, 796, 932
TauI GCSGC 2 cut(s) 208, 721
TfiI GAWTC 6 cut(s) 190, 253, 304, 511, 663, 955
Tru1I TTAA 2 cut(s) 35, 458
Tru9I TTAA 2 cut(s) 35, 458
TseFI GTSAC 3 cut(s) 631, 781, 967
TseI GCWGC 1 cut(s) 721
Tsp45I GTSAC 3 cut(s) 631, 781, 967
TspDTI ATGAA 4 cut(s) 317, 385, 545, 549
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 886
XhoI CTCGAG 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 221
XspI CTAG 2 cut(s) 8, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.