FvH4_5g22360

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015345
Physical Location & Seq
Reverse (-)
13749992 .. 13752459
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22360.t1

Sequence Viewer

Length: 966 bp
ATGGCTCTAGAAGCCATAGCTTCCAGTGAGCCCTTCAACTTCATCATCTATGACACCATCTCCGCAACCCCCTACAGCTGCCAAGACTCTCCGGCTCTGGCCGAGACCAGCTTCATAGTGGAGAACTGTGCGGCTACTACTACTCCTACCATGAAAGCTGCCGGAGCTCAAGATCAAAATCAAAGTGGTATTGTAGCTCTGGAGAGTTGTTCCACACTGGGAACTCGAAGCCGGGGCCTGACGTCTGTGACACAACAGCAAGGGAGGAAGAAGAGGAAGCGAAAGCCGAGGGTTTGCAAGAACAAGGAAGAAGCCGAAACGCAAAGAATGACTCACATTGCTGTTGAGAGAAACCGCAGAAAGCAAATGAATGAGCACCTCGCCATTTTGCGCTCTCTCATGCCTGAGTCTTATGCACAAAGGGGTGACCAAGCCTCTATAGTGGGTGGTGCCATAGAATTTGTGAAGGAGCTTGAGCACCTTCTGCAGTCCCTTGAAGCTCAGAAGCTTCAACTTCTACCAAGTAATGTTGTTAATGAAGATAGCAGTACTACTGCAAACTCCAAAGTTGTGCAGCCGATAGTAACCCCATTGTTACAATTTTTGGAGTGTGATATTTCCCAAGGTCATCAGTCCTCTTGGTCTCAGCAGCAGACCCCTAGTAAGTTTACATCAAAAACCAAAGCAGACATAGCTGATATTGAGGTCACTTTGATTGAGACCCACGCAAATCTTCGAATTGTGACGCAAAGAATTAGCCCAAGACAGCTTTCGAAGTTGGTTGCTGGAGTTCAAACGCTTCAACTTACCATCCTTCATCTCACTGTTAACACCATCTACCCTTTTGTTCTATACTCCATTAGTGTTAAGATTGAAGAAGGGTGCTTGCTCACTTCCGTAGATGATATAGCAGCAGCATTTTACCACATGCTTAGAGTAATTGAAGAAGCAGCTGCCTTGTGTTAA

Protein Analysis

322

Amino Acids

35.42

Weight (kDa)

6.67

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 108 - 159 7.4e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 449
AciI CCGC 3 cut(s) 63, 131, 355
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 550
AgsI TTSAA 7 cut(s) 37, 497, 512, 794, 803, 875, 944
AjuI GAANNNNNNNTTGG 2 cut(s) 754, 786
Alw21I GWGCWC 3 cut(s) 169, 378, 480
Alw26I GTCTC 3 cut(s) 98, 648, 713
AoxI GGCC 2 cut(s) 99, 235
ApeKI GCWGC 8 cut(s) 78, 158, 574, 649, 911, 914, 950, 953
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 2 cut(s) 736, 773
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 2 cut(s) 33, 169
Bbv12I GWGCWC 3 cut(s) 169, 378, 480
BbvI GCAGC 8 cut(s) 65, 145, 586, 661, 923, 926, 940, 962
BccI CCATC 3 cut(s) 65, 818, 842
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 98, 648, 713
BfaI CTAG 2 cut(s) 8, 660
BfmI CTRYAG 3 cut(s) 73, 438, 485
BisI GCNGC 9 cut(s) 79, 132, 159, 575, 650, 912, 915, 951, 954
BlsI GCNGC 9 cut(s) 80, 133, 160, 576, 651, 913, 916, 952, 955
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 236, 451
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 227
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 2 cut(s) 221, 807
Bpu14I TTCGAA 2 cut(s) 736, 773
BpuEI CTTGAG 2 cut(s) 153, 494
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 3 cut(s) 98, 648, 713
BsaJI CCNNGG 3 cut(s) 232, 287, 622
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 127, 157
Bse1I ACTGG 2 cut(s) 24, 222
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 232, 287, 622
BseGI GGATG 1 cut(s) 810
BseJI GATNNNNATC 1 cut(s) 177
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 396, 515, 659
BseNI ACTGG 2 cut(s) 24, 222
BseXI GCAGC 8 cut(s) 65, 145, 586, 661, 923, 926, 940, 962
BsgI GTGCAG 1 cut(s) 593
BshFI GGCC 2 cut(s) 101, 237
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 3 cut(s) 169, 378, 480
BsiSI CCGG 3 cut(s) 92, 162, 232
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 3 cut(s) 98, 648, 713
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 101, 237
Bso31I GGTCTC 3 cut(s) 98, 648, 713
Bsp119I TTCGAA 2 cut(s) 736, 773
Bsp1286I GDGCHC 4 cut(s) 33, 169, 378, 480
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 3 cut(s) 63, 131, 355
BspANI GGCC 2 cut(s) 101, 237
BspCNI CTCAG 3 cut(s) 397, 514, 658
BspLI GGNNCC 2 cut(s) 236, 451
BspMAI CTGCAG 1 cut(s) 489
BspT104I TTCGAA 2 cut(s) 736, 773
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 3 cut(s) 98, 648, 713
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 2 cut(s) 24, 222
BssECI CCNNGG 3 cut(s) 232, 287, 622
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 128, 826
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBI TTCGAA 2 cut(s) 736, 773
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 4 cut(s) 405, 501, 645, 932
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 3 cut(s) 98, 648, 713
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 11, 164, 484, 692
BstNSI RCATGY 1 cut(s) 931
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 3 cut(s) 73, 438, 485
BstV1I GCAGC 8 cut(s) 65, 145, 586, 661, 923, 926, 940, 962
BsuRI GGCC 2 cut(s) 101, 237
BtsCI GGATG 1 cut(s) 810
BtsIMutI CAGTG 3 cut(s) 31, 215, 822
Cac8I GCNNGC 1 cut(s) 887
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 754
Csp6I GTAC 1 cut(s) 549
CviAII CATG 3 cut(s) 151, 400, 928
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 4 cut(s) 405, 501, 645, 932
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 622
Eco24I GRGCYC 2 cut(s) 33, 169
Eco31I GGTCTC 3 cut(s) 98, 648, 713
Eco53kI GAGCTC 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 33, 169
ErhI CCWWGG 1 cut(s) 622
FaeI CATG 3 cut(s) 154, 403, 931
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 150, 399, 927
Fnu4HI GCNGC 9 cut(s) 79, 132, 159, 575, 650, 912, 915, 951, 954
FokI GGATG 1 cut(s) 797
FriOI GRGCYC 2 cut(s) 33, 169
Fsp4HI GCNGC 9 cut(s) 79, 132, 159, 575, 650, 912, 915, 951, 954
FspBI CTAG 2 cut(s) 8, 660
GlaI GCGC 1 cut(s) 392
GluI GCNGC 9 cut(s) 79, 132, 159, 575, 650, 912, 915, 951, 954
GsuI CTGGAG 2 cut(s) 221, 807
HaeIII GGCC 2 cut(s) 101, 237
HapII CCGG 3 cut(s) 92, 162, 232
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 154, 403, 931
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 3 cut(s) 86, 331, 407
HpaI GTTAAC 1 cut(s) 829
HpaII CCGG 3 cut(s) 92, 162, 232
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 669, 829
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 3 cut(s) 8, 170, 200
Hpy8I GTNNAC 2 cut(s) 669, 829
HpyAV CCTTC 5 cut(s) 43, 460, 491, 824, 872
HpyCH4III ACNGT 2 cut(s) 128, 826
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 5 cut(s) 297, 416, 487, 557, 574
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 164, 484, 692
HpyF3I CTNAG 4 cut(s) 405, 501, 645, 932
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 403, 931
HspAI GCGC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 164, 469
Lsp1109I GCAGC 8 cut(s) 65, 145, 586, 661, 923, 926, 940, 962
MaeI CTAG 2 cut(s) 8, 660
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 6 cut(s) 247, 425, 583, 594, 706, 742
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 7 cut(s) 280, 283, 320, 551, 725, 887, 956
MhlI GDGCHC 4 cut(s) 33, 169, 378, 480
MluCI AATT 5 cut(s) 458, 599, 738, 753, 939
MlyI GAGTC 3 cut(s) 80, 325, 416
MnlI CCTC 7 cut(s) 258, 267, 282, 389, 445, 646, 697
MseI TTAA 4 cut(s) 534, 828, 867, 964
MspA1I CMGCKG 2 cut(s) 78, 953
MspI CCGG 3 cut(s) 92, 162, 232
MspR9I CCNGG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 11, 164, 484, 692
NciI CCSGG 1 cut(s) 233
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 154, 403, 931
NlaIV GGNNCC 2 cut(s) 236, 451
NmeAIII GCCGAG 2 cut(s) 127, 312
NmuCI GTSAC 4 cut(s) 247, 425, 706, 742
NspI RCATGY 1 cut(s) 931
NspV TTCGAA 2 cut(s) 736, 773
PkrI GCNGC 9 cut(s) 80, 133, 160, 576, 651, 913, 916, 952, 955
PleI GAGTC 3 cut(s) 80, 325, 415
PpsI GAGTC 3 cut(s) 80, 325, 415
Psp124BI GAGCTC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 236, 451
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 489
PvuII CAGCTG 2 cut(s) 78, 953
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 4 cut(s) 534, 828, 867, 964
SatI GCNGC 9 cut(s) 79, 132, 159, 575, 650, 912, 915, 951, 954
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 3 cut(s) 80, 325, 416
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 4 cut(s) 33, 169, 378, 480
SfcI CTRYAG 3 cut(s) 73, 438, 485
SfuI TTCGAA 2 cut(s) 736, 773
SmlI CTYRAG 2 cut(s) 168, 473
SmoI CTYRAG 2 cut(s) 168, 473
Sse9I AATT 5 cut(s) 458, 599, 738, 753, 939
SsiI CCGC 3 cut(s) 63, 131, 355
SspMI CTAG 2 cut(s) 8, 660
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 622
TaaI ACNGT 2 cut(s) 128, 826
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 226, 736, 773
TasI AATT 5 cut(s) 458, 599, 738, 753, 939
TatI WGTACW 1 cut(s) 548
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 4 cut(s) 534, 828, 867, 964
Tru9I TTAA 4 cut(s) 534, 828, 867, 964
TscAI CASTG 3 cut(s) 31, 222, 829
TseFI GTSAC 4 cut(s) 247, 425, 706, 742
TseI GCWGC 8 cut(s) 78, 158, 574, 649, 911, 914, 950, 953
Tsp45I GTSAC 4 cut(s) 247, 425, 706, 742
TspDTI ATGAA 6 cut(s) 31, 103, 167, 383, 552, 806
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 3 cut(s) 31, 222, 829
XapI RAATTY 1 cut(s) 458
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XspI CTAG 2 cut(s) 8, 660
ZraI GACGTC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.