Rh7DG259300

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015345
Physical Location & Seq
Reverse (-)
27272710 .. 27275537
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG259300.1

Sequence Viewer

Length: 1038 bp
ATGGCTCTAGAAGCCATTTCTTCCAATGAGCCCTTCAACTTCATCATCTATGACACCATCTCCGCAACCTCCTACAGCTGCCAAGACTCTCCGGCTGTGGCCGAGACCAGCTTCTTACTGGAGAACTGTGCCACTACTACTACTCCTACCATGAAAGAGGCCGGAGCTCAAGATCAGAATCAAAGCGGTATTGTAGCTTTAGAGAGTTGTACCACACTCGGAACTCGAAGTCGGAGCCTGACGTCTGTGACTCAACAGCAAGGGAGGAAGAAGAGGAAGCGAAAGCCGAGGGTTTGCAAGAACAAGGAAGAAGCCGAGACGCAGAGAATGACTCACATTGCTGTTGAGAGAAACCGCAGAAAGCAAATGAATGAGCATCTCGCTATTTTGCGCTCTCTCATGCCTGAGTCTTATGCTCAAAGGGGTGACCAAGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTTGAGCACCTTTTGCTGTCCCTTGAAGCTCAGAAGCTTCAACTTCAACAAAGCAAGGTTGTTAATGAAGATAGCAGTACTACTTCCAACTCCAAAGTTGTACAGCCAATTATAACCCCATTCTTACCATTTTCGGAGTATGATATTTCCCAAGGTCAGTCGTCTTGGTCTCAACAGCAGAGCCCTAACAAGTTCACATCAAAAACCAAGGCAGACATAGCTGATATTGAGGTCACATTGATTGAGACCCACGCAAACCTTCGAATTGTGACGCGAAGAATTACCCCGAGACAGCTTTCAAAGTTGGTTGCAGGAGTTCAAACACTTCAACTTACCATCCTTCATCTCACTGTTAACACCATCTACCCTTTTGTTCTCTACTCCATTAGTGTCAAGGTATGTAAATATTTCACCAAAGCTTTTCACATTATGCATGTTCTGCATATATGTATTCATATTTCTGAAAATCCAGAAAAGAAAAAAGTACCCAGAAAACGGATTATGTGCTCAGATATTCAAGGTTTCAAGAGAATAATCATATATGGTGTACTTTTTAGAAGAAATTAG

Protein Analysis

345

Amino Acids

39.0

Weight (kDa)

9.5

Isoelectric Point (pI)

65.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 108 - 159 8.3e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 745
AciI CCGC 3 cut(s) 63, 186, 355
AcoI YGGCCR 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 5 cut(s) 211, 550, 573, 957, 1020
AfiI CCNNNNNNNGG 1 cut(s) 966
AgsI TTSAA 9 cut(s) 37, 497, 512, 518, 771, 791, 800, 989, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
Alw21I GWGCWC 3 cut(s) 169, 480, 980
Alw26I GTCTC 5 cut(s) 98, 311, 645, 710, 754
Ama87I CYCGRG 1 cut(s) 757
AoxI GGCC 2 cut(s) 99, 159
ApeKI GCWGC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 437, 874
AsuII TTCGAA 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 757
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 3 cut(s) 33, 169, 656
Bbv12I GWGCWC 3 cut(s) 169, 480, 980
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 65, 815, 839
BcoDI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 2 cut(s) 73, 438
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmcAI AGTACT 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 757
BmiI GGNNCC 2 cut(s) 236, 451
BmsI GCATC 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 2 cut(s) 153, 494
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 3 cut(s) 98, 645, 710
BsaJI CCNNGG 3 cut(s) 287, 622, 678
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 966
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 287, 622, 678
BseGI GGATG 1 cut(s) 807
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 966
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 396, 515, 993
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 2 cut(s) 101, 161
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 3 cut(s) 169, 480, 980
BsiHKCI CYCGRG 1 cut(s) 757
BsiSI CCGG 2 cut(s) 92, 162
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 966
BsmAI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 101, 161
Bso31I GGTCTC 3 cut(s) 98, 645, 710
BsoBI CYCGRG 1 cut(s) 757
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 5 cut(s) 33, 169, 480, 656, 980
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 3 cut(s) 63, 186, 355
BspANI GGCC 2 cut(s) 101, 161
BspCNI CTCAG 3 cut(s) 397, 514, 992
BspFNI CGCG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 236, 451
BspT104I TTCGAA 1 cut(s) 733
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 3 cut(s) 98, 645, 710
BsrDI GCAATG 1 cut(s) 336
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 287, 622, 678
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 622, 678
Bst4CI ACNGT 2 cut(s) 128, 823
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 2 cut(s) 484, 910
BstAUI TGTACA 1 cut(s) 571
BstBI TTCGAA 1 cut(s) 733
BstDEI CTNAG 3 cut(s) 405, 501, 979
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 807
BstFNI CGCG 1 cut(s) 745
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 5 cut(s) 98, 311, 645, 710, 754
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 11, 484, 689, 910
BstNSI RCATGY 1 cut(s) 908
BstPI GGTNACC 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 73, 438
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 2 cut(s) 101, 161
BtsCI GGATG 1 cut(s) 807
BtsIMutI CAGTG 1 cut(s) 819
CfoI GCGC 1 cut(s) 393
CseI GACGC 2 cut(s) 328, 751
Csp6I GTAC 5 cut(s) 210, 549, 572, 956, 1019
CviAII CATG 3 cut(s) 151, 400, 905
CviQI GTAC 5 cut(s) 210, 549, 572, 956, 1019
DdeI CTNAG 3 cut(s) 405, 501, 979
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 622, 678
Eco24I GRGCYC 3 cut(s) 33, 169, 656
Eco31I GGTCTC 3 cut(s) 98, 645, 710
Eco53kI GAGCTC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 757
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 622, 678
EcoT22I ATGCAT 1 cut(s) 906
EcoT38I GRGCYC 3 cut(s) 33, 169, 656
ErhI CCWWGG 2 cut(s) 622, 678
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 3 cut(s) 154, 403, 908
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 150, 399, 904
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 794
FriOI GRGCYC 3 cut(s) 33, 169, 656
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 101, 161
HapII CCGG 2 cut(s) 92, 162
HgaI GACGC 2 cut(s) 328, 751
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 154, 403, 908
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HindIII AAGCTT 2 cut(s) 506, 888
HinfI GANTC 5 cut(s) 86, 178, 250, 331, 407
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 2 cut(s) 92, 162
HphI GGTGA 2 cut(s) 437, 874
Hpy166II GTNNAC 3 cut(s) 666, 826, 1019
Hpy188I TCNGA 7 cut(s) 177, 221, 234, 504, 607, 934, 982
Hpy188III TCNNGA 4 cut(s) 8, 170, 941, 997
Hpy8I GTNNAC 3 cut(s) 666, 826, 1019
HpyAV CCTTC 4 cut(s) 43, 460, 740, 821
HpyCH4III ACNGT 2 cut(s) 128, 823
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 297, 782, 904, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 484, 689, 910
HpyF3I CTNAG 3 cut(s) 405, 501, 979
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 403, 908
HspAI GCGC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 826
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 164, 234, 469
LpnPI CCDG 9 cut(s) 104, 105, 121, 175, 251, 417, 768, 954, 973
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 4 cut(s) 247, 425, 703, 739
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 6 cut(s) 12, 280, 283, 320, 551, 759
MhlI GDGCHC 5 cut(s) 33, 169, 480, 656, 980
MluCI AATT 4 cut(s) 579, 735, 750, 1033
MlyI GAGTC 4 cut(s) 80, 244, 325, 416
MmeI TCCRAC 2 cut(s) 212, 582
MnlI CCTC 7 cut(s) 79, 151, 258, 267, 282, 445, 694
Mph1103I ATGCAT 1 cut(s) 906
MseI TTAA 2 cut(s) 534, 825
MspA1I CMGCKG 1 cut(s) 78
MspI CCGG 2 cut(s) 92, 162
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 4 cut(s) 11, 484, 689, 910
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 154, 403, 908
NlaIV GGNNCC 2 cut(s) 236, 451
NmeAIII GCCGAG 3 cut(s) 127, 312, 340
NmuCI GTSAC 4 cut(s) 247, 425, 703, 739
NsiI ATGCAT 1 cut(s) 906
NspI RCATGY 1 cut(s) 908
NspV TTCGAA 1 cut(s) 733
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 4 cut(s) 80, 244, 325, 415
PpsI GAGTC 4 cut(s) 80, 244, 325, 415
PsiI TTATAA 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 236, 451
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 5 cut(s) 211, 550, 573, 957, 1020
RsaNI GTAC 5 cut(s) 210, 549, 572, 956, 1019
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 534, 825
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 4 cut(s) 80, 244, 325, 416
SduI GDGCHC 5 cut(s) 33, 169, 480, 656, 980
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 73, 438
SfuI TTCGAA 1 cut(s) 733
SmlI CTYRAG 2 cut(s) 168, 473
SmoI CTYRAG 2 cut(s) 168, 473
Sse9I AATT 4 cut(s) 579, 735, 750, 1033
SsiI CCGC 3 cut(s) 63, 186, 355
SspI AATATT 1 cut(s) 878
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 169
StyI CCWWGG 2 cut(s) 622, 678
TaaI ACNGT 2 cut(s) 128, 823
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 226, 733
TasI AATT 4 cut(s) 579, 735, 750, 1033
TatI WGTACW 3 cut(s) 548, 571, 1018
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 534, 825
Tru9I TTAA 2 cut(s) 534, 825
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 4 cut(s) 247, 425, 703, 739
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 4 cut(s) 247, 425, 703, 739
TspDTI ATGAA 6 cut(s) 31, 167, 383, 552, 803, 914
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 1 cut(s) 826
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XspI CTAG 1 cut(s) 8
ZraI GACGTC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 550
Zsp2I ATGCAT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.