Rorug07G0118500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015345
Physical Location & Seq
Reverse (-)
9298165 .. 9298659
495 bp
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UTR
Exon/CDS
Intron
Rorug07G0118500.1

Sequence Viewer

Length: 495 bp
ATGGATTTGGATATACTCAGCTGGAATTGCAGATGCAATGATGCAACTACTAGGGCATTGAAGGATCTAATCTCTCAAAACAAGCCTCAAATCATATTTCTTTGCGAAACCAAGATTAGCCGGATGGGTGACTTTACGGCTCTTCAACGAGCGATTGGGTTTTCTCACTTCAAGGAGGTTCTAAGCAATGGTCAATCCGGAGGATTAGGGATGTTCTGGAACGATGAAGTGCAGGTGCAGGTGGGGACAGTTTCGGACCACCATTTTGACATCTTTATTGATGGGGGTGCTGGAAACCCTAGATGGAGGCTTACCGTTTTTTACGGGTATTCCAGGACGGCTGAGAGAGATGGCTCACGGCGGCTTCTTCGTGAGCTACGGGATTTGGATGCGCTGCCGTGGTTGGTCATAGGGGATTTCAATGAAATCCTCAACAGTTCAGAGAAGATTGATGGCCCGGCCCGGTACGACCTAGCGACAGATGCGGGGCTTTAG

Protein Analysis

164

Amino Acids

18.49

Weight (kDa)

5.14

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 157 4.6e-15 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 223, 229
Acc36I ACCTGC 2 cut(s) 223, 229
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 2 cut(s) 361, 485
AclWI GGATC 1 cut(s) 72
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 4 cut(s) 61, 146, 172, 421
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 2 cut(s) 21, 376
AluI AGCT 2 cut(s) 21, 376
AlwI GGATC 1 cut(s) 72
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 454, 459
ApeKI GCWGC 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 3 cut(s) 256, 455, 460
AsuC2I CCSGG 2 cut(s) 458, 463
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 381
BccI CCATC 5 cut(s) 118, 275, 297, 344, 446
BceAI ACGGC 4 cut(s) 153, 354, 374, 382
BciT130I CCWGG 1 cut(s) 334
BcnI CCSGG 2 cut(s) 458, 463
BfaI CTAG 3 cut(s) 51, 300, 473
BfuAI ACCTGC 2 cut(s) 223, 229
BisI GCNGC 2 cut(s) 362, 395
BlsI GCNGC 2 cut(s) 363, 396
Bme1390I CCNGG 3 cut(s) 334, 458, 463
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 256, 455, 460
BmrFI CCNGG 3 cut(s) 334, 458, 463
BmsI GCATC 4 cut(s) 23, 31, 379, 472
BpuMI CCSGG 2 cut(s) 458, 463
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 197
Bse3DI GCAATG 2 cut(s) 43, 193
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 3 cut(s) 129, 216, 394
BseMI GCAATG 2 cut(s) 43, 193
BseMII CTCAG 2 cut(s) 31, 333
BseXI GCAGC 1 cut(s) 381
BsgI GTGCAG 2 cut(s) 251, 257
BshFI GGCC 2 cut(s) 456, 461
BsiSI CCGG 4 cut(s) 121, 198, 458, 463
BslFI GGGAC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 2 cut(s) 456, 461
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 2 cut(s) 361, 485
BspANI GGCC 2 cut(s) 456, 461
BspCNI CTCAG 2 cut(s) 30, 334
BspEI TCCGGA 1 cut(s) 197
BspMI ACCTGC 2 cut(s) 223, 229
BspPI GGATC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 43, 193
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 3 cut(s) 250, 316, 437
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 17, 182, 342
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 3 cut(s) 129, 216, 394
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 27, 482
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 3 cut(s) 332, 456, 461
BstV1I GCAGC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 2 cut(s) 456, 461
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 3 cut(s) 129, 216, 394
BveI ACCTGC 2 cut(s) 223, 229
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 256, 455, 460
Csp6I GTAC 1 cut(s) 466
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 17, 182, 342
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 332
FaiI YATR 3 cut(s) 14, 95, 410
FaqI GGGAC 1 cut(s) 259
FauI CCCGC 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 362, 395
FokI GGATG 3 cut(s) 136, 223, 401
Fsp4HI GCNGC 2 cut(s) 362, 395
FspBI CTAG 3 cut(s) 51, 300, 473
GlaI GCGC 1 cut(s) 393
GluI GCNGC 2 cut(s) 362, 395
HaeIII GGCC 2 cut(s) 456, 461
HapII CCGG 4 cut(s) 121, 198, 458, 463
HhaI GCGC 1 cut(s) 394
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HpaII CCGG 4 cut(s) 121, 198, 458, 463
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 256, 442
Hpy188III TCNNGA 3 cut(s) 198, 217, 371
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 250, 316, 437
HpyCH4V TGCA 5 cut(s) 30, 36, 44, 232, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 482
HpyF3I CTNAG 3 cut(s) 17, 182, 342
HspAI GCGC 1 cut(s) 392
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 1 cut(s) 64
LguI GCTCTTC 1 cut(s) 147
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 4 cut(s) 23, 31, 379, 472
MaeI CTAG 3 cut(s) 51, 300, 473
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 134, 359, 457
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 25
MnlI CCTC 5 cut(s) 96, 169, 194, 300, 440
MroI TCCGGA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 4 cut(s) 121, 198, 458, 463
MspR9I CCNGG 3 cut(s) 334, 458, 463
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 27, 482
NciI CCSGG 2 cut(s) 458, 463
NdeII GATC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 128
PaqCI CACCTGC 2 cut(s) 223, 229
PciSI GCTCTTC 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 2 cut(s) 363, 396
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspPI GGNCC 3 cut(s) 256, 455, 460
PsuI RGATCY 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 2 cut(s) 362, 395
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 3 cut(s) 256, 455, 460
ScrFI CCNGG 3 cut(s) 334, 458, 463
SetI ASST 6 cut(s) 23, 180, 237, 243, 378, 474
SfaNI GCATC 4 cut(s) 23, 31, 379, 472
SinI GGWCC 1 cut(s) 256
Sse9I AATT 1 cut(s) 25
SsiI CCGC 2 cut(s) 361, 485
SspMI CTAG 3 cut(s) 51, 300, 473
StyD4I CCNGG 3 cut(s) 332, 456, 461
TaaI ACNGT 3 cut(s) 250, 316, 437
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 364
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 240, 438
VpaK11BI GGWCC 1 cut(s) 256
XspI CTAG 3 cut(s) 51, 300, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.