pycom06g02970

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015345
Physical Location & Seq
Reverse (-)
3765819 .. 3767511
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02970.3

Sequence Viewer

Length: 966 bp
ATGCCATTATTAGAAGATCCTCCTTTCAACTTCATCGTCTATGATACCATCTCTGCCACCCCCTACACCAGCCAAGCTCAACACTACTCTTCAGAAACCGCCAATAATTTCATACCTCCTAAAAAATTCTACTACTGCAATAACGCTGCCGCCAAAAGTAGTAATACTAGTATGATATTGGAAGCAGCAGGTGGTGGTGGCGGTAAGAAGACGAAGCAGATGAGCAGCCATCAGCAGCCGCAAGGGCAAGGGGAAGGGCAAGGGAGGAAGAAGAGAAGGAGAAAGGCAAGGGTTTGCAAGAACAAGGAAGAAGCTGAGACGCAGAGAATGACTCACATTGCTGTCGAAAGAAACCGCAGAAAACAAATGAACGACCATCTTGCCATTCTCCGCTCTCTCATGCCCGACTCTTACGCCCAAAGGGGTGACCAGGCCTCTATAGTAGGTGGTGCCATAGAATTCGTGAAGGAACTTGAGCATCTCCTACAGTCCCTTGAAGCTCAAAAGCTCCAACTTTTCCAACATCAACAACAACATAATCCAGAAGATATTGTCACCACCCCCTCCAAAATCGTGCCATCATCCTCTTTTACACAATTACTGGAATACCCTCAGAAGCACTCGTGGTCTCACAGTCATTGCCCTAACAATAAGTACACTTCAAAAACCAAGGGGGCTACCGCTGACATTGAGGTCACGTTAATTGAGACCCATGCAAACCTTAAAATTCTCTCACGCAGAAATATTGCAGCAAGATTACAGCTTCCCAAGTTGGTCGCTGGAATTCATTCACTTCACCTCACAATCCTTCATCTCACTGTTTCAACCATGGATCCATTTGTTCTCTACTGTATTAGTCTCAAGATTGAAGAAGGGTGCTTACTAAGTTCGGCAGATGACATAGCAGCATCACTTCACCACATGCTTAGAGTGATAGAGGAAGCAGCTGCCAGGTTATTGTGTTAA

Protein Analysis

322

Amino Acids

35.92

Weight (kDa)

9.12

Isoelectric Point (pI)

63.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 179
AasI GACNNNNNNGTC 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 393
AciI CCGC 7 cut(s) 99, 150, 201, 239, 355, 391, 681
AclWI GGATC 3 cut(s) 11, 827, 840
AcsI RAATTY 4 cut(s) 125, 458, 726, 783
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 656
AgsI TTSAA 5 cut(s) 28, 497, 663, 825, 869
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 2 cut(s) 429, 950
AluBI AGCT 6 cut(s) 77, 314, 500, 508, 763, 947
AluI AGCT 6 cut(s) 77, 314, 500, 508, 763, 947
Alw26I GTCTC 4 cut(s) 311, 633, 701, 863
AlwI GGATC 3 cut(s) 11, 827, 840
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 8 cut(s) 146, 185, 225, 235, 749, 905, 944, 947
ApoI RAATTY 4 cut(s) 125, 458, 726, 783
Asp700I GAANNNNTTC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 437, 547, 788, 908
BamHI GGATCC 1 cut(s) 832
BanI GGYRCC 1 cut(s) 449
BarI GAAGNNNNNNTAC 2 cut(s) 864, 896
BauI CACGAG 1 cut(s) 622
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 8 cut(s) 133, 197, 237, 247, 761, 917, 934, 956
BccI CCATC 4 cut(s) 56, 237, 384, 586
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 2 cut(s) 431, 952
BcoDI GTCTC 4 cut(s) 311, 633, 701, 863
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 2 cut(s) 438, 485
BfuAI ACCTGC 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 431, 952
BmiI GGNNCC 2 cut(s) 451, 834
BmrFI CCNGG 2 cut(s) 431, 952
BmsI GCATC 2 cut(s) 487, 917
BpiI GAAGAC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpuEI CTTGAG 2 cut(s) 494, 845
BsaI GGTCTC 2 cut(s) 633, 701
BsaJI CCNNGG 2 cut(s) 669, 828
Bse1I ACTGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 336, 637
BseBI CCWGG 2 cut(s) 431, 952
BseDI CCNNGG 2 cut(s) 669, 828
BseGI GGATG 1 cut(s) 581
BseMI GCAATG 2 cut(s) 336, 637
BseMII CTCAG 2 cut(s) 306, 626
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 8 cut(s) 133, 197, 237, 247, 761, 917, 934, 956
BshFI GGCC 1 cut(s) 434
BshNI GGYRCC 1 cut(s) 449
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 4 cut(s) 311, 633, 701, 863
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 1 cut(s) 434
Bso31I GGTCTC 2 cut(s) 633, 701
Bsp143I GATC 2 cut(s) 16, 832
Bsp19I CCATGG 1 cut(s) 828
BspACI CCGC 7 cut(s) 99, 150, 201, 239, 355, 391, 681
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 2 cut(s) 307, 625
BspLI GGNNCC 2 cut(s) 451, 834
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 3 cut(s) 11, 827, 840
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 2 cut(s) 633, 701
BsrBI CCGCTC 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 336, 637
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 669, 828
BssMI GATC 2 cut(s) 16, 832
BssSI CACGAG 1 cut(s) 622
BssT1I CCWWGG 2 cut(s) 669, 828
Bst2BI CACGAG 1 cut(s) 622
Bst2UI CCWGG 2 cut(s) 431, 952
Bst4CI ACNGT 4 cut(s) 489, 635, 820, 851
Bst6I CTCTTC 2 cut(s) 94, 266
BstDEI CTNAG 4 cut(s) 315, 612, 884, 926
BstDSI CCRYGG 1 cut(s) 828
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 581
BstKTI GATC 2 cut(s) 19, 835
BstMAI GTCTC 4 cut(s) 311, 633, 701, 863
BstMBI GATC 2 cut(s) 16, 832
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 431, 952
BstNSI RCATGY 1 cut(s) 925
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 429, 950
BstSFI CTRYAG 2 cut(s) 438, 485
BstV1I GCAGC 8 cut(s) 133, 197, 237, 247, 761, 917, 934, 956
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 2 cut(s) 16, 832
BstYI RGATCY 2 cut(s) 16, 832
BsuRI GGCC 1 cut(s) 434
BtgI CCRYGG 1 cut(s) 828
BtsCI GGATG 1 cut(s) 581
BtsIMutI CAGTG 1 cut(s) 816
BveI ACCTGC 1 cut(s) 179
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 655
CviAII CATG 4 cut(s) 400, 713, 829, 922
CviQI GTAC 1 cut(s) 655
DdeI CTNAG 4 cut(s) 315, 612, 884, 926
DpnI GATC 2 cut(s) 18, 834
DpnII GATC 2 cut(s) 16, 832
DrdI GACNNNNNNGTC 1 cut(s) 692
DseDI GACNNNNNNGTC 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 94, 266
EarI CTCTTC 2 cut(s) 94, 266
Eco130I CCWWGG 2 cut(s) 669, 828
Eco147I AGGCCT 1 cut(s) 434
Eco31I GGTCTC 2 cut(s) 633, 701
Eco57I CTGAAG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 425
EcoRI GAATTC 2 cut(s) 458, 783
EcoRII CCWGG 2 cut(s) 429, 950
EcoT14I CCWWGG 2 cut(s) 669, 828
ErhI CCWWGG 2 cut(s) 669, 828
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 4 cut(s) 403, 716, 832, 925
FaqI GGGAC 1 cut(s) 475
FatI CATG 4 cut(s) 399, 712, 828, 921
FokI GGATG 1 cut(s) 568
FspBI CTAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 434
HgaI GACGC 1 cut(s) 328
Hin1II CATG 4 cut(s) 403, 716, 832, 925
HinfI GANTC 2 cut(s) 331, 407
HphI GGTGA 4 cut(s) 437, 547, 788, 908
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 2 cut(s) 94, 615
Hpy188III TCNNGA 3 cut(s) 463, 542, 862
Hpy8I GTNNAC 1 cut(s) 657
HpyAV CCTTC 5 cut(s) 248, 270, 460, 818, 866
HpyCH4III ACNGT 4 cut(s) 489, 635, 820, 851
HpyCH4IV ACGT 1 cut(s) 698
HpyCH4V TGCA 4 cut(s) 138, 297, 716, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 4 cut(s) 315, 612, 884, 926
HpySE526I ACGT 1 cut(s) 698
Hsp92II CATG 4 cut(s) 403, 716, 832, 925
Kzo9I GATC 2 cut(s) 16, 832
LmnI GCTCC 1 cut(s) 513
LpnPI CCDG 8 cut(s) 82, 174, 416, 443, 555, 587, 765, 937
Lsp1109I GCAGC 8 cut(s) 133, 197, 237, 247, 761, 917, 934, 956
LweI GCATC 2 cut(s) 487, 917
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 698
MaeIII GTNAC 3 cut(s) 425, 553, 694
MalI GATC 2 cut(s) 18, 834
MbiI CCGCTC 1 cut(s) 393
MboI GATC 2 cut(s) 16, 832
MboII GAAGA 8 cut(s) 26, 81, 220, 280, 283, 320, 557, 881
MflI RGATCY 2 cut(s) 16, 832
MluCI AATT 7 cut(s) 106, 125, 458, 596, 702, 726, 783
MlyI GAGTC 2 cut(s) 325, 401
MmeI TCCRAC 2 cut(s) 535, 544
MroXI GAANNNNTTC 1 cut(s) 787
MseI TTAA 3 cut(s) 701, 723, 964
MspA1I CMGCKG 2 cut(s) 683, 947
MspR9I CCNGG 2 cut(s) 431, 952
MvaI CCWGG 2 cut(s) 431, 952
MwoI GCNNNNNNNGC 1 cut(s) 244
NcoI CCATGG 1 cut(s) 828
NdeII GATC 2 cut(s) 16, 832
NlaIII CATG 4 cut(s) 403, 716, 832, 925
NlaIV GGNNCC 2 cut(s) 451, 834
NmuCI GTSAC 3 cut(s) 425, 553, 694
NspI RCATGY 1 cut(s) 925
PaqCI CACCTGC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 787
PleI GAGTC 2 cut(s) 325, 401
PpsI GAGTC 2 cut(s) 325, 401
Psp6I CCWGG 2 cut(s) 429, 950
PspEI GGTNACC 1 cut(s) 425
PspGI CCWGG 2 cut(s) 429, 950
PspN4I GGNNCC 2 cut(s) 451, 834
PsuI RGATCY 2 cut(s) 16, 832
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 1 cut(s) 656
RsaNI GTAC 1 cut(s) 655
SaqAI TTAA 3 cut(s) 701, 723, 964
Sau3AI GATC 2 cut(s) 16, 832
SchI GAGTC 2 cut(s) 325, 401
ScrFI CCNGG 2 cut(s) 431, 952
SfaNI GCATC 2 cut(s) 487, 917
SfcI CTRYAG 2 cut(s) 438, 485
SmlI CTYRAG 2 cut(s) 473, 860
SmoI CTYRAG 2 cut(s) 473, 860
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 7 cut(s) 106, 125, 458, 596, 702, 726, 783
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 7 cut(s) 99, 150, 201, 239, 355, 391, 681
SspI AATATT 1 cut(s) 745
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 429, 950
StyI CCWWGG 2 cut(s) 669, 828
TaaI ACNGT 4 cut(s) 489, 635, 820, 851
TaiI ACGT 1 cut(s) 701
TaqI TCGA 1 cut(s) 345
TasI AATT 7 cut(s) 106, 125, 458, 596, 702, 726, 783
TatI WGTACW 1 cut(s) 654
TauI GCSGC 2 cut(s) 152, 241
Tru1I TTAA 3 cut(s) 701, 723, 964
Tru9I TTAA 3 cut(s) 701, 723, 964
TscAI CASTG 1 cut(s) 823
TseFI GTSAC 3 cut(s) 425, 553, 694
TseI GCWGC 8 cut(s) 146, 185, 225, 235, 749, 905, 944, 947
Tsp45I GTSAC 3 cut(s) 425, 553, 694
TspDTI ATGAA 5 cut(s) 22, 100, 383, 776, 800
TspRI CASTG 1 cut(s) 823
XapI RAATTY 4 cut(s) 125, 458, 726, 783
XceI RCATGY 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 787
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.