Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001656.1

Orthogroup ID

OG0015345

Physical Location & Seq

Genomic Coordinates Forward (+)

37357 .. 39701

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001656.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggctctagaagccatttcttccaatgagcccttcaacttcatcatctatgacaccatctccgcaacctcctacagctgccaagactctccggctgtggccgagaccagcttcttactggagaactgtgccactactactactcctaccatgaaagaggccggagctcaagatcagaatcaaagcggtattgtagctttagaaagttgtaccacactcggaactcgaagtcggagcctgacgtctgtgactcagcagcaagggaggaagaagaggaagcgaaagcctagggtttgcaagaacaaggaagaagccgagacgcagagaatgactcacattgctgttgagagaaaccgcagaaagcaaatgaatgagcatctcgctattttgcgctctctcatgcctgagtcttatgctcaaaggggtgaccaagcctctatagtgggtggtgccatagagtttgtgaaggagcttgagcaccttttgctgtcccttgaagctcagaagcttcaacttcaacaaagcaaggttgttaatgaagatagcagtactacttccaactccaaagttgtacagccaattataaccccattcttacaattttcggagtatgatatttcccaaggtcagtcgtcttggtctcaacagcagagccctaacaagttcacatcaaaaaccaaggcggacatagctgatattgaggtcacattgattgagacccacgcaaaccttcgaattgtgacgcgaagaattaccccgagacagctttcaaagttggttgcaggagttcaaacacttcaacttaccatccttcatctcactgttaacaccatctacccttttgttctctactccattaatgtcaagattgaagaagggtgcttactcacttcagtagatgacatagcagcagcattttaccacatgcttagagtaattgaggaagcagctgccttgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

320

Amino Acids

35.67

Weight (kDa)

7.01

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46690 AT5G46690
fragaria_vesca	FvH4_5g22360
malus_domestica	MD06G1035900.v1.1
prunus_persica	Prupe.5G033300_v2.0.a1
pyrus_communis	pycom06g02970
rosa_chinensis	RchiOBHm_Chr7g0210101
rosa_laevigata	RLG00000003065
rosa_multiflora	Rmu_sc0001656.1_g000007
rosa_roxburghii	Rroxscaffold_3G00248620
rosa_rugosa	Rorug07G0118500
rosa_samantha	Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana	Rw7G021410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AatII	GACGTC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	449
AccII	CGCG	1 cut(s)	745
AciI	CCGC	4 cut(s)	63, 186, 355, 683
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	876
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	211, 550, 573
AgsI	TTSAA	8 cut(s)	37, 497, 512, 518, 771, 791, 800, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Alw21I	GWGCWC	2 cut(s)	169, 480
Alw26I	GTCTC	5 cut(s)	98, 311, 645, 710, 754
Ama87I	CYCGRG	1 cut(s)	757
AoxI	GGCC	2 cut(s)	99, 159
ApeKI	GCWGC	6 cut(s)	78, 256, 908, 911, 947, 950
AseI	ATTAAT	1 cut(s)	858
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	733
AvaI	CYCGRG	1 cut(s)	757
AvrII	CCTAGG	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	3 cut(s)	33, 169, 656
BarI	GAAGNNNNNNTAC	2 cut(s)	867, 899
Bbv12I	GWGCWC	2 cut(s)	169, 480
BbvI	GCAGC	6 cut(s)	65, 268, 920, 923, 937, 959
BccI	CCATC	3 cut(s)	65, 815, 839
BcoDI	GTCTC	5 cut(s)	98, 311, 645, 710, 754
BfaI	CTAG	2 cut(s)	8, 288
BfmI	CTRYAG	2 cut(s)	73, 438
BisI	GCNGC	6 cut(s)	79, 257, 909, 912, 948, 951
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	6 cut(s)	80, 258, 910, 913, 949, 952
BmcAI	AGTACT	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	757
BmiI	GGNNCC	2 cut(s)	236, 451
BmsI	GCATC	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	733
BpuEI	CTTGAG	2 cut(s)	153, 494
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	242
BsaI	GGTCTC	3 cut(s)	98, 645, 710
BsaJI	CCNNGG	3 cut(s)	287, 622, 678
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 127, 157
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	287, 622, 678
BseGI	GGATG	1 cut(s)	807
BseJI	GATNNNNATC	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	266, 396, 515
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	6 cut(s)	65, 268, 920, 923, 937, 959
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	101, 161
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	2 cut(s)	169, 480
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	92, 162
BslFI	GGGAC	1 cut(s)	475
BsmAI	GTCTC	5 cut(s)	98, 311, 645, 710, 754
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	101, 161
Bso31I	GGTCTC	3 cut(s)	98, 645, 710
BsoBI	CYCGRG	1 cut(s)	757
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	4 cut(s)	33, 169, 480, 656
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	4 cut(s)	63, 186, 355, 683
BspANI	GGCC	2 cut(s)	101, 161
BspCNI	CTCAG	3 cut(s)	265, 397, 514
BspFNI	CGCG	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	236, 451
BspT104I	TTCGAA	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	3 cut(s)	98, 645, 710
BsrDI	GCAATG	1 cut(s)	336
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	3 cut(s)	287, 622, 678
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	3 cut(s)	287, 622, 678
Bst4CI	ACNGT	2 cut(s)	128, 823
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	733
BstDEI	CTNAG	4 cut(s)	252, 405, 501, 929
BstEII	GGTNACC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	807
BstFNI	CGCG	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	5 cut(s)	98, 311, 645, 710, 754
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 484, 689
BstNSI	RCATGY	1 cut(s)	928
BstPI	GGTNACC	1 cut(s)	425
BstSFI	CTRYAG	2 cut(s)	73, 438
BstUI	CGCG	1 cut(s)	745
BstV1I	GCAGC	6 cut(s)	65, 268, 920, 923, 937, 959
BsuRI	GGCC	2 cut(s)	101, 161
BtsCI	GGATG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	819
CfoI	GCGC	1 cut(s)	393
CseI	GACGC	2 cut(s)	328, 751
Csp6I	GTAC	3 cut(s)	210, 549, 572
CviAII	CATG	3 cut(s)	151, 400, 925
CviQI	GTAC	3 cut(s)	210, 549, 572
DdeI	CTNAG	4 cut(s)	252, 405, 501, 929
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	3 cut(s)	287, 622, 678
Eco24I	GRGCYC	3 cut(s)	33, 169, 656
Eco31I	GGTCTC	3 cut(s)	98, 645, 710
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	757
Eco91I	GGTNACC	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	425
EcoT14I	CCWWGG	3 cut(s)	287, 622, 678
EcoT38I	GRGCYC	3 cut(s)	33, 169, 656
ErhI	CCWWGG	3 cut(s)	287, 622, 678
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	3 cut(s)	154, 403, 928
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	150, 399, 924
Fnu4HI	GCNGC	6 cut(s)	79, 257, 909, 912, 948, 951
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	3 cut(s)	33, 169, 656
Fsp4HI	GCNGC	6 cut(s)	79, 257, 909, 912, 948, 951
FspBI	CTAG	2 cut(s)	8, 288
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	6 cut(s)	79, 257, 909, 912, 948, 951
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	101, 161
HapII	CCGG	2 cut(s)	92, 162
HgaI	GACGC	2 cut(s)	328, 751
HhaI	GCGC	1 cut(s)	393
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	154, 403, 928
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	5 cut(s)	86, 178, 250, 331, 407
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	2 cut(s)	92, 162
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	666, 826
Hpy188I	TCNGA	5 cut(s)	177, 221, 234, 504, 607
Hpy188III	TCNNGA	3 cut(s)	8, 170, 865
Hpy8I	GTNNAC	2 cut(s)	666, 826
HpyAV	CCTTC	5 cut(s)	43, 460, 740, 821, 869
HpyCH4III	ACNGT	2 cut(s)	128, 823
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	297, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 484, 689
HpyF3I	CTNAG	4 cut(s)	252, 405, 501, 929
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	154, 403, 928
HspAI	GCGC	1 cut(s)	391
KspAI	GTTAAC	1 cut(s)	826
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	3 cut(s)	164, 234, 469
LpnPI	CCDG	7 cut(s)	104, 105, 121, 175, 251, 417, 768
Lsp1109I	GCAGC	6 cut(s)	65, 268, 920, 923, 937, 959
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	8, 288
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	4 cut(s)	247, 425, 703, 739
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	7 cut(s)	12, 280, 283, 320, 551, 759, 884
MhlI	GDGCHC	4 cut(s)	33, 169, 480, 656
MluCI	AATT	5 cut(s)	579, 599, 735, 750, 936
MlyI	GAGTC	4 cut(s)	80, 244, 325, 416
MmeI	TCCRAC	2 cut(s)	212, 582
MnlI	CCTC	7 cut(s)	79, 151, 258, 267, 445, 694, 934
MseI	TTAA	4 cut(s)	534, 825, 858, 961
MspA1I	CMGCKG	2 cut(s)	78, 950
MspI	CCGG	2 cut(s)	92, 162
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	3 cut(s)	11, 484, 689
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	154, 403, 928
NlaIV	GGNNCC	2 cut(s)	236, 451
NmeAIII	GCCGAG	2 cut(s)	127, 340
NmuCI	GTSAC	4 cut(s)	247, 425, 703, 739
NspI	RCATGY	1 cut(s)	928
NspV	TTCGAA	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	6 cut(s)	80, 258, 910, 913, 949, 952
PleI	GAGTC	4 cut(s)	80, 244, 325, 415
PpsI	GAGTC	4 cut(s)	80, 244, 325, 415
PshBI	ATTAAT	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	236, 451
PvuII	CAGCTG	2 cut(s)	78, 950
RsaI	GTAC	3 cut(s)	211, 550, 573
RsaNI	GTAC	3 cut(s)	210, 549, 572
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	534, 825, 858, 961
SatI	GCNGC	6 cut(s)	79, 257, 909, 912, 948, 951
Sau3AI	GATC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	4 cut(s)	80, 244, 325, 416
SduI	GDGCHC	4 cut(s)	33, 169, 480, 656
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	2 cut(s)	73, 438
SfuI	TTCGAA	1 cut(s)	733
SmlI	CTYRAG	2 cut(s)	168, 473
SmoI	CTYRAG	2 cut(s)	168, 473
Sse9I	AATT	5 cut(s)	579, 599, 735, 750, 936
SsiI	CCGC	4 cut(s)	63, 186, 355, 683
SspMI	CTAG	2 cut(s)	8, 288
SstI	GAGCTC	1 cut(s)	169
StyI	CCWWGG	3 cut(s)	287, 622, 678
TaaI	ACNGT	2 cut(s)	128, 823
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	226, 733
TasI	AATT	5 cut(s)	579, 599, 735, 750, 936
TatI	WGTACW	2 cut(s)	548, 571
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	4 cut(s)	534, 825, 858, 961
Tru9I	TTAA	4 cut(s)	534, 825, 858, 961
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	4 cut(s)	247, 425, 703, 739
TseI	GCWGC	6 cut(s)	78, 256, 908, 911, 947, 950
Tsp45I	GTSAC	4 cut(s)	247, 425, 703, 739
TspDTI	ATGAA	5 cut(s)	31, 167, 383, 552, 803
TspRI	CASTG	1 cut(s)	826
VspI	ATTAAT	1 cut(s)	858
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	8, 288
ZraI	GACGTC	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.