Prupe.5G033300_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015345
Physical Location & Seq
Forward (+)
3766289 .. 3769171
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G033300.1

Sequence Viewer

Length: 945 bp
ATGACAATGGCTTTAGAAGCTCTTACTTCTAATGAGCCTTTCAACTTCATCATTTATGATACCATCTCCGCAACCCCCTACAGCTTCCAAGACTCTTCAGGGACGACTAGCAATTTCATACCTCCAGACAAGAACTTCTGCACCAGCACCAGTAGCATGAAATCTGATCAAGACACCCAAATCAAGAGGGCGTTGAATTTGGAAGCCGCAGCAGCAGGTGGTGGTGGTAGGCAGAAGCAGAGTTCTCTGGGTGTAAACAATAATAATGCTCAGCAGCAGCAGCAAGGGCGGAAGAAGAGGAGGAGAAAGCCAAGGGTTTGCAAGAACAAGGAAGAAGCTGAGACTCAGAGAATGACTCACATTGCCGTTGAAAGAAACCGCAGAAAACAAATGAATGAGCATCTTGCCATTCTGCGCTCTCTCATGCCTGACTCTTACGCCCAAAGGGGTGACCAGGCGTCCATAGTAGGAGGAGCCATAGAATTCGTGAAGGAGCTTGAGCACCTCTTGCATTCCCTTGAAGCACAGAAACTCCAACTTCTACACAATGCAGATGTCTCAACCTCCACCTCCAAACCTGCCCAAACCCCTTTTGCACAATTACTAGAATGCCCTCAGTACACTTGGTCTCACTGCCCCAACAAATTCACATCAAAAACCAAGGCAGCCATAGCCGATATTGAGGTCACATTAATTGAGACCCATGCAAACCTTAAGATCATGTCACGCAGAATTAGCCCCAGACAGCTTTCCAAGTTGGTTGGTGGCATCCAATCCCTTCAGCTCACCATCCTTCATCTCACTGTTACCACCATGGACCCTTTTGTTCTCTACTCCATCAGTGTCAAGATTGAAGAAGGGTGCTTACTGAGTTCGGTGGATGACATAGCAACAGCAATTCACCACATGCTTAGAGTAATTGAGGAAGCAGCTACCTTGTGTTAA

Protein Analysis

315

Amino Acids

34.91

Weight (kDa)

8.84

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 2 cut(s) 206, 586
AciI CCGC 4 cut(s) 69, 207, 289, 379
AcsI RAATTY 3 cut(s) 196, 482, 644
AcuI CTGAAG 2 cut(s) 81, 764
AcyI GRCGYC 1 cut(s) 458
AfaI GTAC 1 cut(s) 620
AflII CTTAAG 1 cut(s) 713
AgsI TTSAA 5 cut(s) 43, 196, 371, 521, 854
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 7 cut(s) 20, 84, 338, 496, 748, 784, 932
AluI AGCT 7 cut(s) 20, 84, 338, 496, 748, 784, 932
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 4 cut(s) 335, 562, 633, 692
ApeKI GCWGC 7 cut(s) 209, 212, 274, 277, 280, 665, 929
ApoI RAATTY 3 cut(s) 196, 482, 644
AseI ATTAAT 1 cut(s) 692
AspLEI GCGC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 3 cut(s) 461, 778, 893
AvaII GGWCC 1 cut(s) 817
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 7 cut(s) 221, 224, 286, 289, 292, 677, 941
BccI CCATC 3 cut(s) 71, 797, 845
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 4 cut(s) 335, 562, 633, 692
BfaI CTAG 2 cut(s) 108, 605
BfmI CTRYAG 1 cut(s) 79
BfrI CTTAAG 1 cut(s) 713
BfuAI ACCTGC 2 cut(s) 206, 586
BisI GCNGC 8 cut(s) 207, 210, 213, 275, 278, 281, 666, 930
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 8 cut(s) 208, 211, 214, 276, 279, 282, 667, 931
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 817
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 2 cut(s) 475, 819
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 409, 777
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpmI CTGGAG 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 458
BsaI GGTCTC 2 cut(s) 633, 692
BsaJI CCNNGG 3 cut(s) 311, 660, 813
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 3 cut(s) 311, 660, 813
BseGI GGATG 3 cut(s) 768, 789, 886
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 5 cut(s) 284, 330, 359, 629, 860
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 3 cut(s) 313, 316, 486
BseXI GCAGC 7 cut(s) 221, 224, 286, 289, 292, 677, 941
BsgI GTGCAG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 4 cut(s) 335, 562, 633, 692
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 2 cut(s) 511, 614
Bso31I GGTCTC 2 cut(s) 633, 692
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 166, 717
Bsp1720I GCTNAGC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 4 cut(s) 69, 207, 289, 379
BspCNI CTCAG 5 cut(s) 283, 331, 358, 628, 861
BspLI GGNNCC 2 cut(s) 475, 819
BspMI ACCTGC 2 cut(s) 206, 586
BspTI CTTAAG 1 cut(s) 713
BspTNI GGTCTC 2 cut(s) 633, 692
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 311, 660, 813
BssMI GATC 2 cut(s) 166, 717
BssNI GRCGYC 1 cut(s) 458
BssT1I CCWWGG 3 cut(s) 311, 660, 813
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 805
Bst6I CTCTTC 2 cut(s) 100, 290
BstACI GRCGYC 1 cut(s) 458
BstAFI CTTAAG 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 508
BstDEI CTNAG 6 cut(s) 270, 339, 345, 615, 869, 911
BstDSI CCRYGG 1 cut(s) 813
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 3 cut(s) 768, 789, 886
BstHHI GCGC 1 cut(s) 417
BstKTI GATC 2 cut(s) 169, 720
BstMAI GTCTC 4 cut(s) 335, 562, 633, 692
BstMBI GATC 2 cut(s) 166, 717
BstMWI GCNNNNNNNGC 8 cut(s) 17, 153, 212, 280, 286, 508, 671, 735
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 910
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 7 cut(s) 221, 224, 286, 289, 292, 677, 941
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 3 cut(s) 768, 789, 886
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 3 cut(s) 631, 801, 847
BveI ACCTGC 2 cut(s) 206, 586
CfoI GCGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 817
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 619
CviAII CATG 6 cut(s) 157, 424, 704, 721, 814, 907
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 6 cut(s) 270, 339, 345, 615, 869, 911
DpnI GATC 2 cut(s) 168, 719
DpnII GATC 2 cut(s) 166, 717
DriI GACNNNNNGTC 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 100, 290
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 2 cut(s) 100, 290
EciI GGCGGA 1 cut(s) 304
Eco130I CCWWGG 3 cut(s) 311, 660, 813
Eco31I GGTCTC 2 cut(s) 633, 692
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 2 cut(s) 81, 764
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 3 cut(s) 311, 660, 813
ErhI CCWWGG 3 cut(s) 311, 660, 813
FaeI CATG 6 cut(s) 160, 427, 707, 724, 817, 910
FaqI GGGAC 1 cut(s) 115
FatI CATG 6 cut(s) 156, 423, 703, 720, 813, 906
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 8 cut(s) 207, 210, 213, 275, 278, 281, 666, 930
FokI GGATG 3 cut(s) 755, 776, 893
Fsp4HI GCNGC 8 cut(s) 207, 210, 213, 275, 278, 281, 666, 930
FspBI CTAG 2 cut(s) 108, 605
GlaI GCGC 1 cut(s) 416
GluI GCNGC 8 cut(s) 207, 210, 213, 275, 278, 281, 666, 930
GsuI CTGGAG 1 cut(s) 108
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 6 cut(s) 160, 427, 707, 724, 817, 910
Hin6I GCGC 1 cut(s) 415
HinP1I GCGC 1 cut(s) 415
HinfI GANTC 4 cut(s) 92, 343, 355, 431
HphI GGTGA 3 cut(s) 461, 778, 893
Hpy166II GTNNAC 2 cut(s) 256, 621
Hpy188I TCNGA 2 cut(s) 166, 348
Hpy188III TCNNGA 5 cut(s) 125, 170, 184, 487, 847
Hpy8I GTNNAC 2 cut(s) 256, 621
HpyAV CCTTC 4 cut(s) 484, 788, 803, 851
HpyCH4III ACNGT 1 cut(s) 805
HpyCH4V TGCA 6 cut(s) 141, 321, 511, 551, 596, 707
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 153, 212, 280, 286, 508, 671, 735
HpyF3I CTNAG 6 cut(s) 270, 339, 345, 615, 869, 911
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 6 cut(s) 160, 427, 707, 724, 817, 910
HspAI GCGC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 166, 717
LmnI GCTCC 2 cut(s) 473, 493
Lsp1109I GCAGC 7 cut(s) 221, 224, 286, 289, 292, 677, 941
LweI GCATC 2 cut(s) 409, 777
MaeI CTAG 2 cut(s) 108, 605
MaeIII GTNAC 4 cut(s) 449, 685, 723, 805
MalI GATC 2 cut(s) 168, 719
MboI GATC 2 cut(s) 166, 717
MboII GAAGA 5 cut(s) 87, 304, 307, 344, 866
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 9 cut(s) 112, 196, 482, 599, 644, 693, 732, 897, 918
MlyI GAGTC 4 cut(s) 86, 337, 349, 425
MmeI TCCRAC 1 cut(s) 559
MseI TTAA 3 cut(s) 692, 714, 943
MspCI CTTAAG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 455
Mva1269I GAATGC 2 cut(s) 511, 614
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 8 cut(s) 17, 153, 212, 280, 286, 508, 671, 735
NcoI CCATGG 1 cut(s) 813
NdeII GATC 2 cut(s) 166, 717
NlaIII CATG 6 cut(s) 160, 427, 707, 724, 817, 910
NlaIV GGNNCC 2 cut(s) 475, 819
NmuCI GTSAC 3 cut(s) 449, 685, 723
NspI RCATGY 1 cut(s) 910
PaqCI CACCTGC 1 cut(s) 206
PctI GAATGC 2 cut(s) 511, 614
PkrI GCNGC 8 cut(s) 208, 211, 214, 276, 279, 282, 667, 931
PleI GAGTC 4 cut(s) 86, 337, 349, 425
PpsI GAGTC 4 cut(s) 86, 337, 349, 425
PshBI ATTAAT 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 453
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 475, 819
PspPI GGNCC 1 cut(s) 817
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
SaqAI TTAA 3 cut(s) 692, 714, 943
SatI GCNGC 8 cut(s) 207, 210, 213, 275, 278, 281, 666, 930
Sau3AI GATC 2 cut(s) 166, 717
Sau96I GGNCC 1 cut(s) 817
SchI GAGTC 4 cut(s) 86, 337, 349, 425
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 2 cut(s) 409, 777
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 497, 713
SmoI CTYRAG 2 cut(s) 497, 713
Sse9I AATT 9 cut(s) 112, 196, 482, 599, 644, 693, 732, 897, 918
SsiI CCGC 4 cut(s) 69, 207, 289, 379
SspMI CTAG 2 cut(s) 108, 605
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 3 cut(s) 311, 660, 813
TaaI ACNGT 1 cut(s) 805
TasI AATT 9 cut(s) 112, 196, 482, 599, 644, 693, 732, 897, 918
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 692, 714, 943
Tru9I TTAA 3 cut(s) 692, 714, 943
TscAI CASTG 3 cut(s) 638, 808, 847
TseFI GTSAC 3 cut(s) 449, 685, 723
TseI GCWGC 7 cut(s) 209, 212, 274, 277, 280, 665, 929
Tsp45I GTSAC 3 cut(s) 449, 685, 723
TspDTI ATGAA 5 cut(s) 37, 106, 173, 407, 785
TspRI CASTG 3 cut(s) 638, 808, 847
Vha464I CTTAAG 1 cut(s) 713
VpaK11BI GGWCC 1 cut(s) 817
VspI ATTAAT 1 cut(s) 692
XapI RAATTY 3 cut(s) 196, 482, 644
XceI RCATGY 1 cut(s) 910
XspI CTAG 2 cut(s) 108, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.