Rw7G021410

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015345
Physical Location & Seq
Reverse (-)
24876029 .. 24878092
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021410.1

Sequence Viewer

Length: 924 bp
ATGGCTCTAGAAGCCATTTCTTCCAATGAGCCCTTCAACTTCATCATCTATGACACCATCTCCGCAACCTCCTACAGCTGCCAAGACTCTCCGGCTGTGGCCGAGACCAGCTTCTTACTGGAGAACTGTGCCACTACTACTACTCCTACCATGAAAGAGGCCGGAGCTCAAGATCAGAATCAAAGCGGTATTGTAGCTTTAGAAAGTTGTACCACACTCGGAACTCGAAGTCGGAGCCTGACGTCTGTGACTCAACAGCAAGGGAGGAAGAAGAGGAAGCGAAAGCCTAGGGTTTGCAAGAACAAGGAAGAAGCCGAGACGCAGAGAATGACTCACATTGCTGTTGAGAGAAACCGCAGAAAGCAAATGAATGAGCATCTCGCTATTTTGCGCTCTCTCATGCCTGAGTCTTATGCTCAAAGGGGTGACCAAGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTTGAGCACCTTTTGCTGTCCCTTGAAGCTCAGAAGCTTCAACTTCAACAAAGCAAGGTTGTTAATGAAGATAGCAGTACTACTTCCAACTCCAAAGTTTATGATATTTCCCAAGGTCAGTCGTCTTGGTCTCAACAGCAGAGCCCTAACAAGTTCACATCAAAAACCAAGGCGGACATAGCTGATATTGAGGTCACATTGATTGAGACCCACGCAAACCTTCGAATTGTGACGCGAAGAATTACCCCGAGACAGCTTTCAAAGTTGGTTGCAGGAGTTCAAACACTTCAACTTACCATCCTTCATCTCACTGTTAACACCATCTACCCTTTTGTTCTCTACTCCATTAATGTCAAGATTGAAGAAGGGTGCTTACTCACTTCAGTAGATGACATAGCAGCAGCATTTTACCACATGCTTAGAGTAATTGAGGAAGCAGCTGCCTTGTGTTAA

Protein Analysis

307

Amino Acids

34.17

Weight (kDa)

7.62

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 108 - 159 7e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015345)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46690 AT5G46690
fragaria_vesca FvH4_5g22360
malus_domestica MD06G1035900.v1.1
prunus_persica Prupe.5G033300_v2.0.a1
pyrus_communis pycom06g02970
rosa_chinensis RchiOBHm_Chr7g0210101
rosa_laevigata RLG00000003065
rosa_multiflora Rmu_sc0001656.1_g000007
rosa_roxburghii Rroxscaffold_3G00248620
rosa_rugosa Rorug07G0118500
rosa_samantha Rh7AG252000 Rh7BG246800 Rh7CG269000 Rh7DG259300
rosa_wichuraiana Rw7G021410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 706
AciI CCGC 4 cut(s) 63, 186, 355, 644
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 2 cut(s) 211, 550
AgsI TTSAA 8 cut(s) 37, 497, 512, 518, 732, 752, 761, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
Alw21I GWGCWC 2 cut(s) 169, 480
Alw26I GTCTC 5 cut(s) 98, 311, 606, 671, 715
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 2 cut(s) 99, 159
ApeKI GCWGC 5 cut(s) 78, 869, 872, 908, 911
AseI ATTAAT 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 694
AvaI CYCGRG 1 cut(s) 718
AvrII CCTAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 3 cut(s) 33, 169, 617
BarI GAAGNNNNNNTAC 2 cut(s) 828, 860
Bbv12I GWGCWC 2 cut(s) 169, 480
BbvI GCAGC 5 cut(s) 65, 881, 884, 898, 920
BccI CCATC 3 cut(s) 65, 776, 800
BcoDI GTCTC 5 cut(s) 98, 311, 606, 671, 715
BfaI CTAG 2 cut(s) 8, 288
BfmI CTRYAG 2 cut(s) 73, 438
BisI GCNGC 5 cut(s) 79, 870, 873, 909, 912
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 5 cut(s) 80, 871, 874, 910, 913
BmcAI AGTACT 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 718
BmiI GGNNCC 2 cut(s) 236, 451
BmsI GCATC 1 cut(s) 385
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 2 cut(s) 153, 494
BsaBI GATNNNNATC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 3 cut(s) 98, 606, 671
BsaJI CCNNGG 3 cut(s) 287, 583, 639
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 127, 157
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 287, 583, 639
BseGI GGATG 1 cut(s) 768
BseJI GATNNNNATC 1 cut(s) 177
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 396, 515
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 5 cut(s) 65, 881, 884, 898, 920
Bsh1236I CGCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 101, 161
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 169, 480
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 2 cut(s) 92, 162
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 5 cut(s) 98, 311, 606, 671, 715
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 2 cut(s) 101, 161
Bso31I GGTCTC 3 cut(s) 98, 606, 671
BsoBI CYCGRG 1 cut(s) 718
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 4 cut(s) 33, 169, 480, 617
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 4 cut(s) 63, 186, 355, 644
BspANI GGCC 2 cut(s) 101, 161
BspCNI CTCAG 2 cut(s) 397, 514
BspFNI CGCG 1 cut(s) 706
BspLI GGNNCC 2 cut(s) 236, 451
BspT104I TTCGAA 1 cut(s) 694
BspT107I GGYRCC 1 cut(s) 449
BspTNI GGTCTC 3 cut(s) 98, 606, 671
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 287, 583, 639
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 3 cut(s) 287, 583, 639
Bst4CI ACNGT 2 cut(s) 128, 784
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 694
BstDEI CTNAG 3 cut(s) 405, 501, 890
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 768
BstFNI CGCG 1 cut(s) 706
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 5 cut(s) 98, 311, 606, 671, 715
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 11, 484, 650
BstNSI RCATGY 1 cut(s) 889
BstPI GGTNACC 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 73, 438
BstUI CGCG 1 cut(s) 706
BstV1I GCAGC 5 cut(s) 65, 881, 884, 898, 920
BsuRI GGCC 2 cut(s) 101, 161
BtsCI GGATG 1 cut(s) 768
BtsIMutI CAGTG 1 cut(s) 780
CfoI GCGC 1 cut(s) 393
CseI GACGC 2 cut(s) 328, 712
Csp6I GTAC 2 cut(s) 210, 549
CviAII CATG 3 cut(s) 151, 400, 886
CviQI GTAC 2 cut(s) 210, 549
DdeI CTNAG 3 cut(s) 405, 501, 890
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 659
Ecl136II GAGCTC 1 cut(s) 167
Eco130I CCWWGG 3 cut(s) 287, 583, 639
Eco24I GRGCYC 3 cut(s) 33, 169, 617
Eco31I GGTCTC 3 cut(s) 98, 606, 671
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 718
Eco91I GGTNACC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 425
EcoT14I CCWWGG 3 cut(s) 287, 583, 639
EcoT38I GRGCYC 3 cut(s) 33, 169, 617
ErhI CCWWGG 3 cut(s) 287, 583, 639
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 3 cut(s) 154, 403, 889
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 150, 399, 885
Fnu4HI GCNGC 5 cut(s) 79, 870, 873, 909, 912
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 3 cut(s) 33, 169, 617
Fsp4HI GCNGC 5 cut(s) 79, 870, 873, 909, 912
FspBI CTAG 2 cut(s) 8, 288
GlaI GCGC 1 cut(s) 392
GluI GCNGC 5 cut(s) 79, 870, 873, 909, 912
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 101, 161
HapII CCGG 2 cut(s) 92, 162
HgaI GACGC 2 cut(s) 328, 712
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 3 cut(s) 154, 403, 889
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 5 cut(s) 86, 178, 250, 331, 407
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 2 cut(s) 92, 162
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 627, 787
Hpy188I TCNGA 4 cut(s) 177, 221, 234, 504
Hpy188III TCNNGA 3 cut(s) 8, 170, 826
Hpy8I GTNNAC 2 cut(s) 627, 787
HpyAV CCTTC 5 cut(s) 43, 460, 701, 782, 830
HpyCH4III ACNGT 2 cut(s) 128, 784
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 297, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 484, 650
HpyF3I CTNAG 3 cut(s) 405, 501, 890
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 3 cut(s) 154, 403, 889
HspAI GCGC 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 164, 234, 469
LpnPI CCDG 7 cut(s) 104, 105, 121, 175, 251, 417, 729
Lsp1109I GCAGC 5 cut(s) 65, 881, 884, 898, 920
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 8, 288
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 4 cut(s) 247, 425, 664, 700
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 7 cut(s) 12, 280, 283, 320, 551, 720, 845
MhlI GDGCHC 4 cut(s) 33, 169, 480, 617
MluCI AATT 3 cut(s) 696, 711, 897
MlyI GAGTC 4 cut(s) 80, 244, 325, 416
MmeI TCCRAC 2 cut(s) 212, 582
MnlI CCTC 7 cut(s) 79, 151, 258, 267, 445, 655, 895
MseI TTAA 4 cut(s) 534, 786, 819, 922
MspA1I CMGCKG 2 cut(s) 78, 911
MspI CCGG 2 cut(s) 92, 162
MvnI CGCG 1 cut(s) 706
MwoI GCNNNNNNNGC 3 cut(s) 11, 484, 650
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 154, 403, 889
NlaIV GGNNCC 2 cut(s) 236, 451
NmeAIII GCCGAG 2 cut(s) 127, 340
NmuCI GTSAC 4 cut(s) 247, 425, 664, 700
NspI RCATGY 1 cut(s) 889
NspV TTCGAA 1 cut(s) 694
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 5 cut(s) 80, 871, 874, 910, 913
PleI GAGTC 4 cut(s) 80, 244, 325, 415
PpsI GAGTC 4 cut(s) 80, 244, 325, 415
PshBI ATTAAT 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 236, 451
PvuII CAGCTG 2 cut(s) 78, 911
RsaI GTAC 2 cut(s) 211, 550
RsaNI GTAC 2 cut(s) 210, 549
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 4 cut(s) 534, 786, 819, 922
SatI GCNGC 5 cut(s) 79, 870, 873, 909, 912
Sau3AI GATC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 4 cut(s) 80, 244, 325, 416
SduI GDGCHC 4 cut(s) 33, 169, 480, 617
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 2 cut(s) 73, 438
SfuI TTCGAA 1 cut(s) 694
SmlI CTYRAG 2 cut(s) 168, 473
SmoI CTYRAG 2 cut(s) 168, 473
Sse9I AATT 3 cut(s) 696, 711, 897
SsiI CCGC 4 cut(s) 63, 186, 355, 644
SspMI CTAG 2 cut(s) 8, 288
SstI GAGCTC 1 cut(s) 169
StyI CCWWGG 3 cut(s) 287, 583, 639
TaaI ACNGT 2 cut(s) 128, 784
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 226, 694
TasI AATT 3 cut(s) 696, 711, 897
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 4 cut(s) 534, 786, 819, 922
Tru9I TTAA 4 cut(s) 534, 786, 819, 922
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 4 cut(s) 247, 425, 664, 700
TseI GCWGC 5 cut(s) 78, 869, 872, 908, 911
Tsp45I GTSAC 4 cut(s) 247, 425, 664, 700
TspDTI ATGAA 5 cut(s) 31, 167, 383, 552, 764
TspRI CASTG 1 cut(s) 787
VspI ATTAAT 1 cut(s) 819
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 8, 288
ZraI GACGTC 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.