Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012083

Physical Location & Seq

Genomic Coordinates Forward (+)

19351292 .. 19353495

Gene Structure 2204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTATGGAAGATCTGGTCTTGACAGGTTTAAGAAGTCCCAAACTTCGGAACCCTTCTCTGTATCAGCAAATCCTCCTCCGGTGGTACAACAACATCTGTCTCCGGAGGCATTGTCGGGGCAAAAAACTCAGATTGGAGCTGGTCAATCAAACTGGCATCCCCCTGATTGGGCGATTGAGCCTCGTGCCGGTGTCTACTCTCTGGAAGTTGTGAAAGACGGCCAGATCCTTGATCGGATTCATCTAGATAGACGAAGGCATATCTTCGGGAGACAACATCAGACTTGTGATTTTGTCCTTGATCATCAGTCTGTTTCCCGCCAGCATGCCGCAGTTGTTCCTCACAAGAATGGCAGCATCTTTGTGATTGACTTGGGATCAGCTCATGGTACGTTTGTTGCAAATGAGAGGTTGACTAAAGATACTCCTGTAGAGCTTGAAGTGGGTCAATCCTTACGATTTGCTGCCTCCACAAGAATCTACCTTCTGAGAAAGAACAGTGAGGCTCTCTTTTCTCGCCCTCCACCTCCAGCTGAGATTAAGCTTCCTCCACCTCCTGATGCTTCTGATGAGGAAGCTGTTGTTGCTTACAATACCTTGCTGAATCGATATGGTTTAAGCAATGGAGAATCTGGTGGTATGTTAGGGAAAAGGAAAGAGAAGACCGGATCAGAAGCGGGAGTGGCTAAGAGGATGAAGAAAGTGAGAGTGAGCTTCAGGGATCAACTAGGAGGAGAGCTGGCTGAGATTGTTGGCATGTCTGATGGAGCAGACGTGGAAACAGAGCCTGGTCCTATAAATGTCAAAGAAGGAAGCCTCGTTGGGAAATATGAATCACTGGTGCGAGTGACACTCATACCCAAAGGCAAAGTGAAGGAAGAGAAAGCCTTTACAGGAGGAACAAGAGGAGGTGTAACAGATCGACTCCAGGAAGCTATGAATATGTTGAAACGGGGTCCAAAAACAGGGATTTACGATGACCTTTACGGTGGTGACTCACTTGCCAAGGCTGTTGGTACGTCATGGGCTTCTGTGAGTCAACCAGCAGCTGAAACTGAATGTGGAGGGGTTGGTGAAGAAGATGATAACGACGATCTGTTTGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016604 GO:0016607 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0097159 GO:0098772 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

369

Amino Acids

39.98

Weight (kDa)

6.18

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	80 - 151	3.3e-06	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	88 - 154	1.8e-18	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47790
fragaria_vesca	FvH4_3g00210
malus_domestica	MD05G1362800.v1.1 MD10G1340400.v1.1
prunus_persica	Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1
pyrus_communis	pycom05g32930 pycom10g29020
rosa_chinensis	RchiOBHm_Chr5g0000281
rosa_laevigata	RLG00000030856
rosa_multiflora	Rmu_ssc0000385.1_g000005
rosa_roxburghii	Rroxscaffold_1G00075830
rosa_rugosa	Rorug04G0383000
rosa_samantha	Rh5AG002100 Rh5BG003500 Rh5CG002400 Rh5DG002400
rosa_wichuraiana	Rw5G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	319, 330, 677
AclWI	GGATC	4 cut(s)	220, 385, 676, 729
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	700
AfaI	GTAC	3 cut(s)	87, 391, 1018
AfiI	CCNNNNNNNGG	5 cut(s)	46, 168, 169, 188, 965
AgsI	TTSAA	2 cut(s)	440, 949
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	2 cut(s)	787, 927
Alw26I	GTCTC	2 cut(s)	105, 265
AlwI	GGATC	4 cut(s)	220, 385, 676, 729
AlwNI	CAGNNNCTG	2 cut(s)	788, 1049
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	354, 464, 1046
ArsI	GACNNNNNNTTYG	1 cut(s)	1082
AspS9I	GGNCC	2 cut(s)	791, 956
AsuHPI	GGTGA	2 cut(s)	1004, 1085
AvaII	GGWCC	2 cut(s)	791, 956
BaeI	ACNNNNGTAYC	4 cut(s)	381, 414, 414, 447
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	366, 451, 1058
BccI	CCATC	1 cut(s)	758
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	789, 929
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	105, 265
BfaI	CTAG	2 cut(s)	245, 728
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	4 cut(s)	330, 355, 465, 1047
BlsI	GCNGC	4 cut(s)	331, 356, 466, 1048
Bme1390I	CCNGG	2 cut(s)	789, 929
Bme18I	GGWCC	2 cut(s)	791, 956
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	791, 956
BmiI	GGNNCC	2 cut(s)	51, 957
BmrFI	CCNGG	2 cut(s)	789, 929
BmsI	GCATC	3 cut(s)	166, 366, 550
BpiI	GAAGAC	1 cut(s)	668
BplI	GAGNNNNNCTC	2 cut(s)	837, 869
BpmI	CTGGAG	2 cut(s)	513, 911
Bsa29I	ATCGAT	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	1005
BsaWI	WCCGGW	3 cut(s)	79, 103, 665
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 759, 789
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 168, 169, 188, 965
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	158, 843
Bse3DI	GCAATG	1 cut(s)	628
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	789, 929
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	1 cut(s)	1005
BseGI	GGATG	2 cut(s)	157, 699
BseLI	CCNNNNNNNGG	5 cut(s)	46, 168, 169, 188, 965
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	143, 479, 525, 735
BseNI	ACTGG	2 cut(s)	158, 843
BseRI	GAGGAG	3 cut(s)	66, 747, 921
BseXI	GCAGC	3 cut(s)	366, 451, 1058
BshFI	GGCC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	607
BsiSI	CCGG	4 cut(s)	80, 104, 189, 666
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	46, 168, 169, 188, 965
BsmAI	GTCTC	2 cut(s)	105, 265
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
BspACI	CCGC	3 cut(s)	319, 330, 677
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	4 cut(s)	142, 480, 526, 736
BspDI	ATCGAT	1 cut(s)	607
BspEI	TCCGGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	51, 957
BspPI	GGATC	4 cut(s)	220, 385, 676, 729
BsrDI	GCAATG	1 cut(s)	628
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	158, 843
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	1005
BssMI	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	1005
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	789, 929
Bst4CI	ACNGT	2 cut(s)	500, 989
Bst6I	CTCTTC	1 cut(s)	873
BstC8I	GCNNGC	3 cut(s)	323, 327, 741
BstDEI	CTNAG	5 cut(s)	129, 488, 534, 687, 744
BstF5I	GGATG	2 cut(s)	157, 699
BstKTI	GATC	9 cut(s)	14, 228, 235, 304, 380, 671, 724, 922, 1096
BstMAI	GTCTC	2 cut(s)	105, 265
BstMBI	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 683
BstNI	CCWGG	2 cut(s)	789, 929
BstNSI	RCATGY	2 cut(s)	329, 760
BstSCI	CCNGG	2 cut(s)	787, 927
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	366, 451, 1058
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	11, 225
BstYI	RGATCY	2 cut(s)	11, 225
Bsu15I	ATCGAT	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	775
BtsCI	GGATG	2 cut(s)	157, 699
BtsIMutI	CAGTG	2 cut(s)	505, 836
Cac8I	GCNNGC	3 cut(s)	323, 327, 741
CaiI	CAGNNNCTG	2 cut(s)	788, 1049
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	791, 956
ClaI	ATCGAT	1 cut(s)	607
Csp6I	GTAC	3 cut(s)	86, 390, 1017
CviAII	CATG	4 cut(s)	326, 386, 757, 1023
CviQI	GTAC	3 cut(s)	86, 390, 1017
DdeI	CTNAG	5 cut(s)	129, 488, 534, 687, 744
DpnI	GATC	9 cut(s)	13, 227, 234, 303, 379, 670, 723, 921, 1095
DpnII	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	873
EarI	CTCTTC	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	1005
Eco47I	GGWCC	2 cut(s)	791, 956
Eco57I	CTGAAG	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	787, 927
EcoT14I	CCWWGG	1 cut(s)	1005
ErhI	CCWWGG	1 cut(s)	1005
FaeI	CATG	4 cut(s)	329, 389, 760, 1026
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	325, 385, 756, 1022
FauI	CCCGC	2 cut(s)	326, 670
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	330, 355, 465, 1047
FokI	GGATG	2 cut(s)	144, 706
Fsp4HI	GCNGC	4 cut(s)	330, 355, 465, 1047
FspBI	CTAG	2 cut(s)	245, 728
GluI	GCNGC	4 cut(s)	330, 355, 465, 1047
GsuI	CTGGAG	2 cut(s)	513, 911
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	4 cut(s)	80, 104, 189, 666
Hin1II	CATG	4 cut(s)	329, 389, 760, 1026
HincII	GTYRAC	2 cut(s)	414, 1040
HindII	GTYRAC	2 cut(s)	414, 1040
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	8 cut(s)	238, 477, 604, 629, 833, 924, 995, 1036
HpaII	CCGG	4 cut(s)	80, 104, 189, 666
HphI	GGTGA	2 cut(s)	1004, 1085
Hpy166II	GTNNAC	3 cut(s)	196, 414, 1040
Hpy188I	TCNGA	8 cut(s)	49, 132, 237, 282, 489, 568, 673, 763
Hpy188III	TCNNGA	6 cut(s)	20, 104, 203, 245, 268, 557
Hpy8I	GTNNAC	3 cut(s)	196, 414, 1040
Hpy99I	CGWCG	1 cut(s)	1094
HpyAV	CCTTC	5 cut(s)	64, 249, 494, 803, 868
HpyCH4III	ACNGT	2 cut(s)	500, 989
HpyCH4IV	ACGT	3 cut(s)	392, 774, 1019
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 683
HpyF3I	CTNAG	5 cut(s)	129, 488, 534, 687, 744
HpySE526I	ACGT	3 cut(s)	392, 774, 1019
Hsp92II	CATG	4 cut(s)	329, 389, 760, 1026
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
LmnI	GCTCC	2 cut(s)	137, 767
Lsp1109I	GCAGC	3 cut(s)	366, 451, 1058
LweI	GCATC	3 cut(s)	166, 366, 550
MaeI	CTAG	2 cut(s)	245, 728
MaeII	ACGT	3 cut(s)	392, 774, 1019
MaeIII	GTNAC	4 cut(s)	847, 913, 992, 1103
MalI	GATC	9 cut(s)	13, 227, 234, 303, 379, 670, 723, 921, 1095
MboI	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
MboII	GAAGA	7 cut(s)	21, 256, 673, 709, 890, 1088, 1091
MflI	RGATCY	2 cut(s)	11, 225
MlyI	GAGTC	3 cut(s)	918, 989, 1045
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	3 cut(s)	30, 540, 617
MslI	CAYNNNNRTG	2 cut(s)	348, 362
MspA1I	CMGCKG	2 cut(s)	533, 1049
MspI	CCGG	4 cut(s)	80, 104, 189, 666
MspR9I	CCNGG	2 cut(s)	789, 929
MvaI	CCWGG	2 cut(s)	789, 929
MwoI	GCNNNNNNNGC	2 cut(s)	584, 683
NdeII	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
NlaIII	CATG	4 cut(s)	329, 389, 760, 1026
NlaIV	GGNNCC	2 cut(s)	51, 957
NmuCI	GTSAC	3 cut(s)	847, 992, 1103
NspI	RCATGY	2 cut(s)	329, 760
PaeI	GCATGC	1 cut(s)	329
PfeI	GAWTC	5 cut(s)	238, 477, 604, 629, 833
PfoI	TCCNGGA	1 cut(s)	927
PkrI	GCNGC	4 cut(s)	331, 356, 466, 1048
PleI	GAGTC	3 cut(s)	918, 989, 1044
PpsI	GAGTC	3 cut(s)	918, 989, 1044
Psp6I	CCWGG	2 cut(s)	787, 927
PspGI	CCWGG	2 cut(s)	787, 927
PspN4I	GGNNCC	2 cut(s)	51, 957
PspPI	GGNCC	2 cut(s)	791, 956
PstNI	CAGNNNCTG	2 cut(s)	788, 1049
PsuI	RGATCY	2 cut(s)	11, 225
PvuII	CAGCTG	2 cut(s)	533, 1049
RsaI	GTAC	3 cut(s)	87, 391, 1018
RsaNI	GTAC	3 cut(s)	86, 390, 1017
RseI	CAYNNNNRTG	2 cut(s)	348, 362
SaqAI	TTAA	3 cut(s)	30, 540, 617
SatI	GCNGC	4 cut(s)	330, 355, 465, 1047
Sau3AI	GATC	9 cut(s)	11, 225, 232, 301, 377, 668, 721, 919, 1093
Sau96I	GGNCC	2 cut(s)	791, 956
SchI	GAGTC	3 cut(s)	918, 989, 1045
ScrFI	CCNGG	2 cut(s)	789, 929
SfaNI	GCATC	3 cut(s)	166, 366, 550
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	2 cut(s)	791, 956
SmiMI	CAYNNNNRTG	2 cut(s)	348, 362
SphI	GCATGC	1 cut(s)	329
SsiI	CCGC	3 cut(s)	319, 330, 677
SspMI	CTAG	2 cut(s)	245, 728
StyD4I	CCNGG	2 cut(s)	787, 927
StyI	CCWWGG	1 cut(s)	1005
TaaI	ACNGT	2 cut(s)	500, 989
TaiI	ACGT	3 cut(s)	395, 777, 1022
TaqI	TCGA	2 cut(s)	607, 922
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	5 cut(s)	238, 477, 604, 629, 833
Tru1I	TTAA	3 cut(s)	30, 540, 617
Tru9I	TTAA	3 cut(s)	30, 540, 617
TscAI	CASTG	2 cut(s)	505, 843
TseFI	GTSAC	3 cut(s)	847, 992, 1103
TseI	GCWGC	3 cut(s)	354, 464, 1046
Tsp45I	GTSAC	3 cut(s)	847, 992, 1103
TspDTI	ATGAA	4 cut(s)	230, 710, 846, 953
TspRI	CASTG	2 cut(s)	505, 843
VpaK11BI	GGWCC	2 cut(s)	791, 956
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	2 cut(s)	329, 760
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	245, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.