RchiOBHm_Chr5g0000281

Nuclear inhibitor of protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
178307 .. 181182
2876 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28185

Sequence Viewer

Length: 1191 bp
ATGTACGGCAGAGCTGGGCTTGATAGATTTAGGAAAGCTCAGTCCTTGGAACCCTTCTCAGTGAATGCCAATGCCCAATCCTCCACTCCAGCTCAGAAGCCCCCCACTGGTGCTGTTCAGGAGGCCGGCCCTCAGCATCAGCATCTGACTCAGATTGGTGAGGGTCAGTCGAGTTGGCAGCCCCCCGAGTGGGCAATGGATCCCCGCCCTGGTGTTTATTTTCTTCAAGTCTTGAAGGATGGTCAACTTGTCGACCGCATTCCTCTTGATAGGCGCCGCAACATCTTTGGTCGCCAATCTCATACTTGTAATTTTGTGCTTGATCATCAGTCTGTTTCCCGCCAGCATGCTGTTGTTGTTCCTCACAAGAATGGAAGCATATATGTAATTGATTTGGGATCTGCGCACGGTACTTTTGTTGCAAATGAACGGGTGACTAAAGACACCCCTGTTGAGCTTGAAGTTGGGCAGTCTTTGCGGTTTGCTGCATCAACTAGAACTTATGTCTTACGAAAGAACGATGCAGCTCTTTTTCCTCGTCCTCCGATGCCTTCCGAGGTTGACCTGCCACCACCACCTGATCCATCTGATGAAGAAGCTGTTGTCGCTTATAATACGCTTCTAAATCGTTATGGTCTGACCAGGTCTAGCAAACTGCCTAGGCCCAATGAGTCAGCTAACTCCGCAAACAAGAAAGGTGACACCCAGCATCCGGAGAGAGCCTCTAAGAGAATTAAGAAGGCAAGAGTATCATTCAGGGATCAAGTTGGAGGACAGTTGGTTGAAGTTGTTGGTATATCAGATGGTGTGGATGTAGAAACAGAACCTGGTCCGATAGGTGTAAAAGAAGGGCAAAGTCTCGTTGGAAAATATGGATCCCTTGTACAGACTACAGTAATTCCCAAAGGGAAGGAGCAATCATCTGCCAAGGAAGCGAATAATTCCCAGAAGGGGATGACTGAAAAATTACAACAAGTCTTAGATAGAGTCAAAACTGCTCCAAAAGGTGGGATATATGATGACCTTTATGGAGAATCTTATTCGGGCAAAGTGGGCACTTCCTGGGCATATCCTTCACTTAGTTCCACTGCCTCTCCAGGTAAAGACTCTGATGAAAAGCCATCGAATGCAAACCATGGAACTAACTCGGGCCAAGTTGATGGTGACGAGGATGATTTATTTGGAGACTGA

Protein Analysis

396

Amino Acids

43.02

Weight (kDa)

6.78

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 95 - 161 1.6e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012083)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
Acc16I TGCGCA 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 712
AciI CCGC 6 cut(s) 205, 256, 277, 340, 478, 684
AclWI GGATC 7 cut(s) 194, 207, 406, 575, 768, 870, 883
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 3 cut(s) 5, 412, 885
AfiI CCNNNNNNNGG 7 cut(s) 107, 189, 190, 209, 712, 951, 1007
AgsI TTSAA 4 cut(s) 227, 235, 461, 785
AjnI CCWGG 5 cut(s) 208, 641, 826, 1061, 1096
AluBI AGCT 7 cut(s) 14, 38, 92, 457, 527, 599, 677
AluI AGCT 7 cut(s) 14, 38, 92, 457, 527, 599, 677
Alw26I GTCTC 2 cut(s) 863, 1179
AlwI GGATC 7 cut(s) 194, 207, 406, 575, 768, 870, 883
AlwNI CAGNNNCTG 2 cut(s) 145, 827
Ama87I CYCGRG 2 cut(s) 185, 1147
Aor13HI TCCGGA 1 cut(s) 712
AoxI GGCC 4 cut(s) 123, 127, 662, 1150
ApeKI GCWGC 3 cut(s) 178, 485, 524
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 2 cut(s) 276, 406
AspS9I GGNCC 4 cut(s) 128, 663, 830, 1150
AsuHPI GGTGA 4 cut(s) 170, 445, 710, 1175
AvaI CYCGRG 2 cut(s) 185, 1147
AvaII GGWCC 1 cut(s) 830
AvrII CCTAGG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 1058
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BamHI GGATCC 2 cut(s) 199, 875
BanI GGYRCC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 190, 472, 536
BccI CCATC 5 cut(s) 233, 592, 797, 1129, 1154
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 5 cut(s) 210, 643, 828, 1063, 1098
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 863, 1179
BfaI CTAG 3 cut(s) 495, 648, 660
BfmI CTRYAG 1 cut(s) 891
BfoI RGCGCY 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 573
BisI GCNGC 4 cut(s) 179, 277, 486, 525
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 4 cut(s) 180, 278, 487, 526
Bme1390I CCNGG 5 cut(s) 210, 643, 828, 1063, 1098
Bme18I GGWCC 1 cut(s) 830
BmeT110I CYCGRG 2 cut(s) 185, 1147
BmgT120I GGNCC 4 cut(s) 128, 663, 830, 1150
BmiI GGNNCC 4 cut(s) 51, 201, 275, 877
BmrFI CCNGG 5 cut(s) 210, 643, 828, 1063, 1098
BmsI GCATC 6 cut(s) 145, 151, 497, 511, 537, 718
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 2 cut(s) 72, 1080
Bpu10I CCTNAGC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 274
BsaJI CCNNGG 7 cut(s) 45, 208, 555, 659, 927, 1062, 1135
BsaWI WCCGGW 1 cut(s) 712
BsaXI ACNNNNNCTCC 2 cut(s) 1078, 1108
Bsc4I CCNNNNNNNGG 7 cut(s) 107, 189, 190, 209, 712, 951, 1007
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 712
BseBI CCWGG 5 cut(s) 210, 643, 828, 1063, 1098
BseDI CCNNGG 7 cut(s) 45, 208, 555, 659, 927, 1062, 1135
BseGI GGATG 5 cut(s) 244, 709, 817, 960, 1177
BseLI CCNNNNNNNGG 7 cut(s) 107, 189, 190, 209, 712, 951, 1007
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 5 cut(s) 53, 72, 107, 146, 164
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 1058
BseXI GCAGC 3 cut(s) 190, 472, 536
BseYI CCCAGC 2 cut(s) 14, 705
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 4 cut(s) 125, 129, 664, 1152
BshNI GGYRCC 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 256
BsiHKCI CYCGRG 2 cut(s) 185, 1147
BsiSI CCGG 2 cut(s) 126, 713
BslI CCNNNNNNNGG 7 cut(s) 107, 189, 190, 209, 712, 951, 1007
BsmAI GTCTC 2 cut(s) 863, 1179
BsmI GAATGC 3 cut(s) 70, 258, 1132
BsnI GGCC 4 cut(s) 125, 129, 664, 1152
BsoBI CYCGRG 2 cut(s) 185, 1147
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp13I TCCGGA 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 6 cut(s) 199, 322, 398, 580, 760, 875
Bsp19I CCATGG 1 cut(s) 1135
BspACI CCGC 6 cut(s) 205, 256, 277, 340, 478, 684
BspANI GGCC 4 cut(s) 125, 129, 664, 1152
BspCNI CTCAG 5 cut(s) 52, 71, 106, 145, 163
BspEI TCCGGA 1 cut(s) 712
BspLI GGNNCC 4 cut(s) 51, 201, 275, 877
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 7 cut(s) 194, 207, 406, 575, 768, 870, 883
BspT107I GGYRCC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 7 cut(s) 45, 208, 555, 659, 927, 1062, 1135
BssMI GATC 6 cut(s) 199, 322, 398, 580, 760, 875
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 4 cut(s) 45, 659, 927, 1135
Bst2UI CCWGG 5 cut(s) 210, 643, 828, 1063, 1098
Bst4CI ACNGT 3 cut(s) 410, 777, 895
BstACI GRCGYC 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 475
BstAUI TGTACA 1 cut(s) 883
BstC8I GCNNGC 3 cut(s) 127, 344, 348
BstDEI CTNAG 8 cut(s) 39, 58, 93, 132, 150, 726, 979, 1079
BstDSI CCRYGG 1 cut(s) 1135
BstF5I GGATG 5 cut(s) 244, 709, 817, 960, 1177
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 2 cut(s) 276, 406
BstKTI GATC 6 cut(s) 202, 325, 401, 583, 763, 878
BstMAI GTCTC 2 cut(s) 863, 1179
BstMBI GATC 6 cut(s) 199, 322, 398, 580, 760, 875
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 475, 605, 683, 932, 1053
BstNI CCWGG 5 cut(s) 210, 643, 828, 1063, 1098
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 5 cut(s) 208, 641, 826, 1061, 1096
BstSFI CTRYAG 1 cut(s) 891
BstSLI GKGCMC 1 cut(s) 1058
BstV1I GCAGC 3 cut(s) 190, 472, 536
BstX2I RGATCY 3 cut(s) 199, 398, 875
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 3 cut(s) 199, 398, 875
BsuRI GGCC 4 cut(s) 125, 129, 664, 1152
BtgI CCRYGG 1 cut(s) 1135
BtsCI GGATG 5 cut(s) 244, 709, 817, 960, 1177
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 3 cut(s) 66, 105, 1086
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 127, 344, 348
CaiI CAGNNNCTG 2 cut(s) 145, 827
CfoI GCGC 2 cut(s) 276, 406
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 4 cut(s) 128, 663, 830, 1150
CsiI ACCWGGT 2 cut(s) 641, 826
Csp6I GTAC 3 cut(s) 4, 411, 884
CviAII CATG 2 cut(s) 347, 1136
CviQI GTAC 3 cut(s) 4, 411, 884
DdeI CTNAG 8 cut(s) 39, 58, 93, 132, 150, 726, 979, 1079
DinI GGCGCC 1 cut(s) 275
DpnI GATC 6 cut(s) 201, 324, 400, 582, 762, 877
DpnII GATC 6 cut(s) 199, 322, 398, 580, 760, 875
Eco130I CCWWGG 4 cut(s) 45, 659, 927, 1135
Eco47I GGWCC 1 cut(s) 830
Eco88I CYCGRG 2 cut(s) 185, 1147
EcoRII CCWGG 5 cut(s) 208, 641, 826, 1061, 1096
EcoT14I CCWWGG 4 cut(s) 45, 659, 927, 1135
EgeI GGCGCC 1 cut(s) 275
EheI GGCGCC 1 cut(s) 275
ErhI CCWWGG 4 cut(s) 45, 659, 927, 1135
FaeI CATG 2 cut(s) 350, 1139
FatI CATG 2 cut(s) 346, 1135
FauI CCCGC 2 cut(s) 212, 347
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 179, 277, 486, 525
FokI GGATG 5 cut(s) 251, 696, 824, 967, 1184
FseI GGCCGGCC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 179, 277, 486, 525
FspBI CTAG 3 cut(s) 495, 648, 660
FspI TGCGCA 1 cut(s) 405
GlaI GCGC 2 cut(s) 275, 405
GluI GCNGC 4 cut(s) 179, 277, 486, 525
GsaI CCCAGC 2 cut(s) 18, 709
GsuI CTGGAG 2 cut(s) 72, 1080
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 4 cut(s) 125, 129, 664, 1152
HapII CCGG 2 cut(s) 126, 713
HhaI GCGC 2 cut(s) 276, 406
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 2 cut(s) 350, 1139
Hin6I GCGC 2 cut(s) 274, 404
HinP1I GCGC 2 cut(s) 274, 404
HincII GTYRAC 3 cut(s) 245, 253, 562
HindII GTYRAC 3 cut(s) 245, 253, 562
HinfI GANTC 5 cut(s) 148, 671, 987, 1034, 1106
HpaII CCGG 2 cut(s) 126, 713
HphI GGTGA 4 cut(s) 170, 445, 710, 1175
Hpy166II GTNNAC 3 cut(s) 245, 253, 562
Hpy188III TCNNGA 4 cut(s) 119, 232, 266, 713
Hpy8I GTNNAC 3 cut(s) 245, 253, 562
HpyAV CCTTC 8 cut(s) 64, 229, 561, 733, 842, 904, 943, 1083
HpyCH4III ACNGT 3 cut(s) 410, 777, 895
HpyCH4V TGCA 4 cut(s) 422, 488, 524, 1130
HpyF10VI GCNNNNNNNGC 5 cut(s) 475, 605, 683, 932, 1053
HpyF3I CTNAG 8 cut(s) 39, 58, 93, 132, 150, 726, 979, 1079
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 2 cut(s) 350, 1139
HspAI GCGC 2 cut(s) 274, 404
KasI GGCGCC 1 cut(s) 273
Kpn2I TCCGGA 1 cut(s) 712
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 6 cut(s) 199, 322, 398, 580, 760, 875
LmnI GCTCC 2 cut(s) 913, 1003
Lsp1109I GCAGC 3 cut(s) 190, 472, 536
LweI GCATC 6 cut(s) 145, 151, 497, 511, 537, 718
MabI ACCWGGT 2 cut(s) 641, 826
MaeI CTAG 3 cut(s) 495, 648, 660
MaeIII GTNAC 3 cut(s) 433, 698, 1163
MalI GATC 6 cut(s) 201, 324, 400, 582, 762, 877
MboI GATC 6 cut(s) 199, 322, 398, 580, 760, 875
MboII GAAGA 2 cut(s) 215, 605
MflI RGATCY 3 cut(s) 199, 398, 875
MhlI GDGCHC 1 cut(s) 1058
MluCI AATT 6 cut(s) 310, 387, 732, 897, 940, 965
Mly113I GGCGCC 1 cut(s) 274
MlyI GAGTC 4 cut(s) 142, 680, 996, 1100
MmeI TCCRAC 2 cut(s) 748, 844
MroI TCCGGA 1 cut(s) 712
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 2 cut(s) 126, 713
MspR9I CCNGG 5 cut(s) 210, 643, 828, 1063, 1098
Mva1269I GAATGC 3 cut(s) 70, 258, 1132
MvaI CCWGG 5 cut(s) 210, 643, 828, 1063, 1098
MwoI GCNNNNNNNGC 5 cut(s) 475, 605, 683, 932, 1053
NaeI GCCGGC 1 cut(s) 127
NarI GGCGCC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 1135
NdeII GATC 6 cut(s) 199, 322, 398, 580, 760, 875
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 350, 1139
NlaIV GGNNCC 4 cut(s) 51, 201, 275, 877
NmuCI GTSAC 3 cut(s) 433, 698, 1163
NsbI TGCGCA 1 cut(s) 405
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PctI GAATGC 3 cut(s) 70, 258, 1132
PdiI GCCGGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 1034
PflFI GACNNNGTC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 4 cut(s) 180, 278, 487, 526
PleI GAGTC 4 cut(s) 142, 679, 995, 1100
PluTI GGCGCC 1 cut(s) 277
PpsI GAGTC 4 cut(s) 142, 679, 995, 1100
PsiI TTATAA 1 cut(s) 612
Psp6I CCWGG 5 cut(s) 208, 641, 826, 1061, 1096
PspFI CCCAGC 2 cut(s) 14, 705
PspGI CCWGG 5 cut(s) 208, 641, 826, 1061, 1096
PspN4I GGNNCC 4 cut(s) 51, 201, 275, 877
PspPI GGNCC 4 cut(s) 128, 663, 830, 1150
PstNI CAGNNNCTG 2 cut(s) 145, 827
PsuI RGATCY 3 cut(s) 199, 398, 875
PsyI GACNNNGTC 1 cut(s) 643
RigI GGCCGGCC 1 cut(s) 129
RsaI GTAC 3 cut(s) 5, 412, 885
RsaNI GTAC 3 cut(s) 4, 411, 884
RseI CAYNNNNRTG 1 cut(s) 369
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 4 cut(s) 179, 277, 486, 525
Sau3AI GATC 6 cut(s) 199, 322, 398, 580, 760, 875
Sau96I GGNCC 4 cut(s) 128, 663, 830, 1150
SchI GAGTC 4 cut(s) 142, 680, 996, 1100
ScrFI CCNGG 5 cut(s) 210, 643, 828, 1063, 1098
SduI GDGCHC 1 cut(s) 1058
SexAI ACCWGGT 2 cut(s) 641, 826
SfaNI GCATC 6 cut(s) 145, 151, 497, 511, 537, 718
SfcI CTRYAG 1 cut(s) 891
SfoI GGCGCC 1 cut(s) 275
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 369
SphI GCATGC 1 cut(s) 350
Sse9I AATT 6 cut(s) 310, 387, 732, 897, 940, 965
SsiI CCGC 6 cut(s) 205, 256, 277, 340, 478, 684
SspDI GGCGCC 1 cut(s) 273
SspMI CTAG 3 cut(s) 495, 648, 660
StyD4I CCNGG 5 cut(s) 208, 641, 826, 1061, 1096
StyI CCWWGG 4 cut(s) 45, 659, 927, 1135
TaaI ACNGT 3 cut(s) 410, 777, 895
TaqI TCGA 3 cut(s) 170, 252, 1124
TasI AATT 6 cut(s) 310, 387, 732, 897, 940, 965
TatI WGTACW 1 cut(s) 883
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 1 cut(s) 1034
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 3 cut(s) 66, 112, 1093
TseFI GTSAC 3 cut(s) 433, 698, 1163
TseI GCWGC 3 cut(s) 178, 485, 524
Tsp45I GTSAC 3 cut(s) 433, 698, 1163
TspDTI ATGAA 3 cut(s) 441, 606, 1128
TspRI CASTG 3 cut(s) 66, 112, 1093
Tth111I GACNNNGTC 1 cut(s) 643
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 830
XceI RCATGY 1 cut(s) 350
XmaJI CCTAGG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 3 cut(s) 495, 648, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.