Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012083

Physical Location & Seq

Genomic Coordinates Reverse (-)

186016 .. 189336

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G002500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTTCGGAAGAGCTGGCCTTGATCGATTTAAGAAAGCTCAGTCCTTGGAACCCTTTTCGCTCAATCCCAATTCCAATTCCAAATCCACTCCCTTGCCCTCTCTTTCGCATTCGCATCAAGCCCAACATCAACCTCCTCCTCCCCCTCTTGCACCTCCCGAGCCTGCCCCTCTCGTGGGGGTTGAGCAGACTCCGCAGCAGCATCTCACTCAGCTTGGTGGGGGTCAGTCCACTTGGCAGCCCCCTGACTGGGCAATTGATCCCCGCCCCGGTGTGTATTATCTTGAGGTTGTCAAGGAAGGTCAGGTTCTTGATCGCATTACTCTCGATAGGCGTCGCAACATCTTTGGCCGCCAATCTCAAACTTGTGACTTTGTGCTGGATCATCAGTCCGTTTCCCGCCAACATGCCGTTGTTGTTCCTCACAAGAATGGAAGCATATATGTAATTGATTTGGGATCTGCACATGGCACTTTTGTTGCAAATGAACGAGTGACTAAAGATACCCCTGTTGAGCTTGAAGTGGGGCAGTCTTTGCGGTTTGCTGCATCAACTAGAACTTATATCTTGAGAAAGAATGATGCAGCTCTTTTTCCTCGTCCTTCACTGCCTGCAGAGGTTTATCTGCCTCCGCCTCCTGATCCCTCTGATGAAGAAGCTGTCGTGGCTTATAATACGCTACTAAATCGTCATGGTCTGACCAGGTTTGACATAGGGCCTATGTCCCGTGAGTCTGGTGACTCAGGTGCAAAAGGTGACACCCAGCAGCCAGAGAGAGCATCCAAGAGAATTAGGAAGGCAAGAGTGTCATTCAGGGATCAAGTGGGCGGAGAGCTGGTTGAAGTAGTCGGGGTTTCAGATGGTGTGGATGTCGAGACTGAACCTGGTCCAATAGGTGTAAAAGAAGGAAGTCTTGTTGGGAAATATGAATCCCTTGTGCAGATTACAGTAATACCAAAAGGAAAGGAGCAATTATCTGCAAAGGAAGACAATTCTTCCCAAAAAGGCATGACTGAAAAATTACAACAGGTCTTAAATAGAGTCAAAACTGCTCCAAAGGGTGGGATTTATGATGACCTTTATGGAGACTCTTTTTCAGGCAAAGTGGGTTCTTCCTGGGCATATCCTTCTGCGGGTTCTAGTGGTAAACAAGGTTCTCCAAGTAGAGAAACCGATGAGAAGGCATTAAGTGTAAAGGTTGGAACTAACTCAAGCCACGCTGATGATGATGAGGATGATTTATTTGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016604 GO:0016607 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0097159 GO:0098772 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

418

Amino Acids

45.26

Weight (kDa)

5.86

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47790
fragaria_vesca	FvH4_3g00210
malus_domestica	MD05G1362800.v1.1 MD10G1340400.v1.1
prunus_persica	Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1
pyrus_communis	pycom05g32930 pycom10g29020
rosa_chinensis	RchiOBHm_Chr5g0000281
rosa_laevigata	RLG00000030856
rosa_multiflora	Rmu_ssc0000385.1_g000005
rosa_roxburghii	Rroxscaffold_1G00075830
rosa_rugosa	Rorug04G0383000
rosa_samantha	Rh5AG002100 Rh5BG003500 Rh5CG002400 Rh5DG002400
rosa_wichuraiana	Rw5G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	1061
AciI	CCGC	8 cut(s)	194, 265, 352, 400, 538, 632, 828, 1133
AclWI	GGATC	5 cut(s)	254, 390, 466, 635, 825
AcoI	YGGCCR	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	334
AfiI	CCNNNNNNNGG	7 cut(s)	175, 176, 249, 250, 269, 1061, 1133
AgsI	TTSAA	2 cut(s)	521, 842
AjnI	CCWGG	3 cut(s)	701, 883, 1115
AluBI	AGCT	7 cut(s)	14, 38, 214, 517, 587, 659, 835
AluI	AGCT	7 cut(s)	14, 38, 214, 517, 587, 659, 835
Alw26I	GTCTC	2 cut(s)	869, 1080
AlwI	GGATC	5 cut(s)	254, 390, 466, 635, 825
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	16, 349, 716
ApeKI	GCWGC	6 cut(s)	196, 199, 238, 545, 584, 766
AspS9I	GGNCC	2 cut(s)	716, 887
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	749, 767
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	887
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BauI	CACGAG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	993
BbvI	GCAGC	6 cut(s)	208, 211, 250, 532, 596, 778
BccI	CCATC	1 cut(s)	854
BceAI	ACGGC	1 cut(s)	395
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	3 cut(s)	703, 885, 1117
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	869, 1080
BfaI	CTAG	2 cut(s)	555, 1140
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	7 cut(s)	197, 200, 239, 352, 546, 585, 767
BlsI	GCNGC	7 cut(s)	198, 201, 240, 353, 547, 586, 768
Bme1390I	CCNGG	4 cut(s)	270, 703, 885, 1117
Bme18I	GGWCC	1 cut(s)	887
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	716, 887
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	4 cut(s)	270, 703, 885, 1117
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	5 cut(s)	124, 211, 557, 571, 788
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	993
BpuEI	CTTGAG	3 cut(s)	305, 589, 1195
BpuMI	CCSGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	45, 268, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	7 cut(s)	175, 176, 249, 250, 269, 1061, 1133
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	3 cut(s)	703, 885, 1117
BseCI	ATCGAT	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	45, 268, 1116
BseGI	GGATG	3 cut(s)	779, 874, 1240
BseLI	CCNNNNNNNGG	7 cut(s)	175, 176, 249, 250, 269, 1061, 1133
BseMII	CTCAG	3 cut(s)	53, 224, 756
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	126, 129
BseXI	GCAGC	6 cut(s)	208, 211, 250, 532, 596, 778
BseYI	CCCAGC	1 cut(s)	762
BsgI	GTGCAG	2 cut(s)	447, 959
BshFI	GGCC	3 cut(s)	18, 351, 718
BshVI	ATCGAT	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	7 cut(s)	175, 176, 249, 250, 269, 1061, 1133
BsmAI	GTCTC	2 cut(s)	869, 1080
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	18, 351, 718
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
BspACI	CCGC	8 cut(s)	194, 265, 352, 400, 538, 632, 828, 1133
BspANI	GGCC	3 cut(s)	18, 351, 718
BspCNI	CTCAG	3 cut(s)	52, 223, 755
BspDI	ATCGAT	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	5 cut(s)	254, 390, 466, 635, 825
BspQI	GCTCTTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	45, 268, 1116
BssMI	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
BssNI	GRCGYC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	173
Bst2UI	CCWGG	3 cut(s)	703, 885, 1117
Bst4CI	ACNGT	1 cut(s)	949
Bst6I	CTCTTC	1 cut(s)	4
BstACI	GRCGYC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	3 cut(s)	16, 165, 612
BstDEI	CTNAG	3 cut(s)	39, 210, 742
BstF5I	GGATG	3 cut(s)	779, 874, 1240
BstKTI	GATC	7 cut(s)	25, 262, 316, 385, 461, 643, 820
BstMAI	GTCTC	2 cut(s)	869, 1080
BstMBI	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 535, 665
BstNI	CCWGG	3 cut(s)	703, 885, 1117
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	4 cut(s)	268, 701, 883, 1115
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	6 cut(s)	208, 211, 250, 532, 596, 778
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	18, 351, 718
BsuTUI	ATCGAT	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	779, 874, 1240
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	16, 165, 612
Cfr13I	GGNCC	2 cut(s)	716, 887
ClaI	ATCGAT	1 cut(s)	25
CseI	GACGC	1 cut(s)	323
CsiI	ACCWGGT	2 cut(s)	701, 883
CviAII	CATG	4 cut(s)	407, 467, 692, 1009
DdeI	CTNAG	3 cut(s)	39, 210, 742
DpnI	GATC	7 cut(s)	24, 261, 315, 384, 460, 642, 819
DpnII	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
EciI	GGCGGA	2 cut(s)	621, 843
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	887
Eco88I	CYCGRG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	701, 883, 1115
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	410, 470, 695, 1012
FalI	AAGNNNNNCTT	2 cut(s)	897, 929
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	4 cut(s)	406, 466, 691, 1008
FauI	CCCGC	3 cut(s)	272, 407, 1126
Fnu4HI	GCNGC	7 cut(s)	197, 200, 239, 352, 546, 585, 767
FokI	GGATG	3 cut(s)	766, 881, 1247
Fsp4HI	GCNGC	7 cut(s)	197, 200, 239, 352, 546, 585, 767
FspBI	CTAG	2 cut(s)	555, 1140
GluI	GCNGC	7 cut(s)	197, 200, 239, 352, 546, 585, 767
GsaI	CCCAGC	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	18, 351, 718
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	4 cut(s)	410, 470, 695, 1012
HinfI	GANTC	6 cut(s)	190, 731, 740, 929, 1041, 1088
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	2 cut(s)	749, 767
Hpy166II	GTNNAC	2 cut(s)	231, 1148
Hpy188I	TCNGA	4 cut(s)	8, 649, 699, 859
Hpy188III	TCNNGA	7 cut(s)	158, 284, 311, 326, 568, 638, 874
Hpy8I	GTNNAC	2 cut(s)	231, 1148
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	6 cut(s)	293, 612, 790, 899, 1137, 1174
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4V	TGCA	9 cut(s)	152, 464, 482, 548, 584, 614, 749, 940, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 535, 665
HpyF3I	CTNAG	3 cut(s)	39, 210, 742
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	4 cut(s)	410, 470, 695, 1012
Kzo9I	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	967, 1057
Lsp1109I	GCAGC	6 cut(s)	208, 211, 250, 532, 596, 778
LweI	GCATC	5 cut(s)	124, 211, 557, 571, 788
MabI	ACCWGGT	2 cut(s)	701, 883
MaeI	CTAG	2 cut(s)	555, 1140
MaeIII	GTNAC	4 cut(s)	368, 493, 737, 755
MalI	GATC	7 cut(s)	24, 261, 315, 384, 460, 642, 819
MboI	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
MboII	GAAGA	5 cut(s)	21, 665, 987, 998, 1104
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	458
MluCI	AATT	8 cut(s)	70, 76, 255, 447, 789, 971, 991, 1019
MlyI	GAGTC	5 cut(s)	184, 734, 740, 1050, 1082
MmeI	TCCRAC	1 cut(s)	1180
MseI	TTAA	3 cut(s)	30, 1034, 1187
MslI	CAYNNNNRTG	2 cut(s)	429, 1221
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	4 cut(s)	270, 703, 885, 1117
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	3 cut(s)	703, 885, 1117
MwoI	GCNNNNNNNGC	3 cut(s)	193, 535, 665
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
NlaIII	CATG	4 cut(s)	410, 470, 695, 1012
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	4 cut(s)	368, 493, 737, 755
NspI	RCATGY	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	4
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	929
PflMI	CCANNNNNTGG	1 cut(s)	1061
PkrI	GCNGC	7 cut(s)	198, 201, 240, 353, 547, 586, 768
PleI	GAGTC	5 cut(s)	184, 734, 739, 1049, 1082
PpsI	GAGTC	5 cut(s)	184, 734, 739, 1049, 1082
PsiI	TTATAA	1 cut(s)	672
Psp6I	CCWGG	3 cut(s)	701, 883, 1115
PspFI	CCCAGC	1 cut(s)	762
PspGI	CCWGG	3 cut(s)	701, 883, 1115
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	716, 887
PsrI	GAACNNNNNNTAC	2 cut(s)	1138, 1170
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	458
RseI	CAYNNNNRTG	2 cut(s)	429, 1221
SapI	GCTCTTC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	30, 1034, 1187
SatI	GCNGC	7 cut(s)	197, 200, 239, 352, 546, 585, 767
Sau3AI	GATC	7 cut(s)	22, 259, 313, 382, 458, 640, 817
Sau96I	GGNCC	2 cut(s)	716, 887
SchI	GAGTC	5 cut(s)	184, 734, 740, 1050, 1082
ScrFI	CCNGG	4 cut(s)	270, 703, 885, 1117
SexAI	ACCWGGT	2 cut(s)	701, 883
SfaNI	GCATC	5 cut(s)	124, 211, 557, 571, 788
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1221
SmlI	CTYRAG	3 cut(s)	284, 568, 1210
SmoI	CTYRAG	3 cut(s)	284, 568, 1210
Sse9I	AATT	8 cut(s)	70, 76, 255, 447, 789, 971, 991, 1019
SsiI	CCGC	8 cut(s)	194, 265, 352, 400, 538, 632, 828, 1133
SspMI	CTAG	2 cut(s)	555, 1140
StyD4I	CCNGG	4 cut(s)	268, 701, 883, 1115
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	949
TaqI	TCGA	3 cut(s)	25, 327, 873
TasI	AATT	8 cut(s)	70, 76, 255, 447, 789, 971, 991, 1019
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	929
Tru1I	TTAA	3 cut(s)	30, 1034, 1187
Tru9I	TTAA	3 cut(s)	30, 1034, 1187
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	4 cut(s)	368, 493, 737, 755
TseI	GCWGC	6 cut(s)	196, 199, 238, 545, 584, 766
Tsp45I	GTSAC	4 cut(s)	368, 493, 737, 755
TspDTI	ATGAA	3 cut(s)	501, 666, 942
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	1061
VpaK11BI	GGWCC	1 cut(s)	887
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	2 cut(s)	555, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.