Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012083

Physical Location & Seq

Genomic Coordinates Forward (+)

189086 .. 191757

Gene Structure 2672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG002400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTACGGCAGAGCTGGGCTTGATAGATTTAGGAAAGCTCAGTCCTTGGAACCCTTCTCAGTGAATGCCAATGCCAAATCCTCCGCTCCAGCTCAGAAGCCCCCCACTGGTGCTGTTCAGGAGGCCGGCCCTCAGCATCTGACTCAGATTGGTGAGGGTCAGTCGAGTTGGCAGCCCCCCGAGTGGGCAATGGATCCCCGCCCTGGTGTTTATTTTCTTCAAGTCTTGAAGGATGGTCAACTTCTCGACCGCATTCCTCTTGATAGGCGCCGCAACATCTTTGGTCGCCAATCTCATACTTGTGATTTTGTGCTTGATCATCAGTCTGTTTCCCGCCAGCATGCTGTTGTTGTTCCTCACAAGAATGGAAGCATATATGTAATTGATTTGGGATCTGCGCACGGTACTTTTGTTGCAAACGAACGGGTGACTAAAGACACCCCTGTTGAGCTTGAAGTTGGGCAGTCTTTGCGGTTTGCTGCATCAACTAGAACTTATGTCTTACGAAAGAACGATGCAGCTCTTTTTCCTCGTCCTCCAATGCCTTCCGAGGTTGACCTGCCACCACCACCTGATCCATCTGATGAAGAAGCTGTTGTCGCTTATAATACGCTTCTAAATCGCTATGGTCTGACCAGGTCTAGCAAACTGCCTAGGCCCAATGAGTCAGCTAACTCCGCAAACAAAAAAGGTGACACCCAGCATCCGGAGAGAGCCTCTAAGAGAATTAAGAAGGCAAGAGTATCATTCAGGGATCAAGTTGGAGGACAGTTGGTTGAAGTTGTTGGTATATCAGATGGTGTGGATGTAGAAACAGAACCTGGTCCGATAGGTGTAAAAGAAGGGCAAAGTCTTGTTGGAAAATATGGATCCCTTGTACAGACTACAGTAATTCCCAAAGGGAAGGAGCAATCATCTGCCAAGGAAGCGAATAATTCCCAGAAGGGGATGACTGAAAAATTACAACAAGTCTTAGATAGAGTCAAAACTGCTCCAAAAGGTGGGATATATGATGACCTTTATGGAGAATCTTATTCGGGCAAAGTGGGCACTTCCTGGGCATATCCTTCACTTAGTTCCACTGCCTCTCCAGGTAAAGACTCTGATGAAAAGCCATCGAATGCAAACCATGGAACTAACTCGGGCCAAGTTGATGATGACGAGGATGATTTATTTGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016604 GO:0016607 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032515 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0097159 GO:0098772 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

394

Amino Acids

42.8

Weight (kDa)

6.48

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	85 - 156	1.8e-06	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	93 - 159	4.8e-19	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47790
fragaria_vesca	FvH4_3g00210
malus_domestica	MD05G1362800.v1.1 MD10G1340400.v1.1
prunus_persica	Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1 Prupe.4G002500_v2.0.a1
pyrus_communis	pycom05g32930 pycom10g29020
rosa_chinensis	RchiOBHm_Chr5g0000281
rosa_laevigata	RLG00000030856
rosa_multiflora	Rmu_ssc0000385.1_g000005
rosa_roxburghii	Rroxscaffold_1G00075830
rosa_rugosa	Rorug04G0383000
rosa_samantha	Rh5AG002100 Rh5BG003500 Rh5CG002400 Rh5DG002400
rosa_wichuraiana	Rw5G000260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc16I	TGCGCA	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccBSI	CCGCTC	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	706
AciI	CCGC	7 cut(s)	84, 199, 250, 271, 334, 472, 678
AclWI	GGATC	7 cut(s)	188, 201, 400, 569, 762, 864, 877
AcyI	GRCGYC	1 cut(s)	268
AfaI	GTAC	3 cut(s)	5, 406, 879
AfiI	CCNNNNNNNGG	7 cut(s)	107, 183, 184, 203, 706, 945, 1001
AgsI	TTSAA	4 cut(s)	221, 229, 455, 779
AjnI	CCWGG	5 cut(s)	202, 635, 820, 1055, 1090
AluBI	AGCT	7 cut(s)	14, 38, 92, 451, 521, 593, 671
AluI	AGCT	7 cut(s)	14, 38, 92, 451, 521, 593, 671
Alw26I	GTCTC	1 cut(s)	1173
AlwI	GGATC	7 cut(s)	188, 201, 400, 569, 762, 864, 877
AlwNI	CAGNNNCTG	2 cut(s)	139, 821
Ama87I	CYCGRG	2 cut(s)	179, 1141
Aor13HI	TCCGGA	1 cut(s)	706
AoxI	GGCC	4 cut(s)	123, 127, 656, 1144
ApeKI	GCWGC	3 cut(s)	172, 479, 518
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	270, 400
AspS9I	GGNCC	4 cut(s)	128, 657, 824, 1144
AsuHPI	GGTGA	3 cut(s)	164, 439, 704
AvaI	CYCGRG	2 cut(s)	179, 1141
AvaII	GGWCC	1 cut(s)	824
AvrII	CCTAGG	1 cut(s)	653
BaeGI	GKGCMC	1 cut(s)	1052
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BamHI	GGATCC	2 cut(s)	193, 869
BanI	GGYRCC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	184, 466, 530
BccI	CCATC	4 cut(s)	227, 586, 791, 1123
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	5 cut(s)	204, 637, 822, 1057, 1092
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	1173
BfaI	CTAG	3 cut(s)	489, 642, 654
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	567
BisI	GCNGC	4 cut(s)	173, 271, 480, 519
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	4 cut(s)	174, 272, 481, 520
Bme1390I	CCNGG	5 cut(s)	204, 637, 822, 1057, 1092
Bme18I	GGWCC	1 cut(s)	824
BmeT110I	CYCGRG	2 cut(s)	179, 1141
BmgT120I	GGNCC	4 cut(s)	128, 657, 824, 1144
BmiI	GGNNCC	4 cut(s)	51, 195, 269, 871
BmrFI	CCNGG	5 cut(s)	204, 637, 822, 1057, 1092
BmsI	GCATC	4 cut(s)	145, 491, 505, 712
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	2 cut(s)	72, 1074
Bpu10I	CCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	268
BsaJI	CCNNGG	7 cut(s)	45, 202, 549, 653, 921, 1056, 1129
BsaWI	WCCGGW	1 cut(s)	706
BsaXI	ACNNNNNCTCC	2 cut(s)	1072, 1102
Bsc4I	CCNNNNNNNGG	7 cut(s)	107, 183, 184, 203, 706, 945, 1001
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	706
BseBI	CCWGG	5 cut(s)	204, 637, 822, 1057, 1092
BseDI	CCNNGG	7 cut(s)	45, 202, 549, 653, 921, 1056, 1129
BseGI	GGATG	5 cut(s)	238, 703, 811, 954, 1171
BseLI	CCNNNNNNNGG	7 cut(s)	107, 183, 184, 203, 706, 945, 1001
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	5 cut(s)	53, 72, 107, 146, 158
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	1052
BseXI	GCAGC	3 cut(s)	184, 466, 530
BseYI	CCCAGC	2 cut(s)	14, 699
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	125, 129, 658, 1146
BshNI	GGYRCC	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	2 cut(s)	179, 1141
BsiSI	CCGG	2 cut(s)	126, 707
BslI	CCNNNNNNNGG	7 cut(s)	107, 183, 184, 203, 706, 945, 1001
BsmAI	GTCTC	1 cut(s)	1173
BsmI	GAATGC	3 cut(s)	70, 252, 1126
BsnI	GGCC	4 cut(s)	125, 129, 658, 1146
BsoBI	CYCGRG	2 cut(s)	179, 1141
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp13I	TCCGGA	1 cut(s)	706
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
Bsp19I	CCATGG	1 cut(s)	1129
BspACI	CCGC	7 cut(s)	84, 199, 250, 271, 334, 472, 678
BspANI	GGCC	4 cut(s)	125, 129, 658, 1146
BspCNI	CTCAG	5 cut(s)	52, 71, 106, 145, 157
BspEI	TCCGGA	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	51, 195, 269, 871
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	7 cut(s)	188, 201, 400, 569, 762, 864, 877
BspT107I	GGYRCC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	7 cut(s)	45, 202, 549, 653, 921, 1056, 1129
BssMI	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
BssNI	GRCGYC	1 cut(s)	268
BssT1I	CCWWGG	4 cut(s)	45, 653, 921, 1129
Bst2UI	CCWGG	5 cut(s)	204, 637, 822, 1057, 1092
Bst4CI	ACNGT	3 cut(s)	404, 771, 889
BstACI	GRCGYC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	469
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	127, 338, 342
BstDEI	CTNAG	8 cut(s)	39, 58, 93, 132, 144, 720, 973, 1073
BstDSI	CCRYGG	1 cut(s)	1129
BstF5I	GGATG	5 cut(s)	238, 703, 811, 954, 1171
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	270, 400
BstKTI	GATC	6 cut(s)	196, 319, 395, 577, 757, 872
BstMAI	GTCTC	1 cut(s)	1173
BstMBI	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	5 cut(s)	469, 599, 677, 926, 1047
BstNI	CCWGG	5 cut(s)	204, 637, 822, 1057, 1092
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	5 cut(s)	202, 635, 820, 1055, 1090
BstSFI	CTRYAG	1 cut(s)	885
BstSLI	GKGCMC	1 cut(s)	1052
BstV1I	GCAGC	3 cut(s)	184, 466, 530
BstX2I	RGATCY	3 cut(s)	193, 392, 869
BstYI	RGATCY	3 cut(s)	193, 392, 869
BsuRI	GGCC	4 cut(s)	125, 129, 658, 1146
BtgI	CCRYGG	1 cut(s)	1129
BtsCI	GGATG	5 cut(s)	238, 703, 811, 954, 1171
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	3 cut(s)	66, 105, 1080
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	127, 338, 342
CaiI	CAGNNNCTG	2 cut(s)	139, 821
CfoI	GCGC	2 cut(s)	270, 400
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	4 cut(s)	128, 657, 824, 1144
CsiI	ACCWGGT	2 cut(s)	635, 820
Csp6I	GTAC	3 cut(s)	4, 405, 878
CviAII	CATG	2 cut(s)	341, 1130
CviQI	GTAC	3 cut(s)	4, 405, 878
DdeI	CTNAG	8 cut(s)	39, 58, 93, 132, 144, 720, 973, 1073
DinI	GGCGCC	1 cut(s)	269
DpnI	GATC	6 cut(s)	195, 318, 394, 576, 756, 871
DpnII	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
Eco130I	CCWWGG	4 cut(s)	45, 653, 921, 1129
Eco47I	GGWCC	1 cut(s)	824
Eco88I	CYCGRG	2 cut(s)	179, 1141
EcoRII	CCWGG	5 cut(s)	202, 635, 820, 1055, 1090
EcoT14I	CCWWGG	4 cut(s)	45, 653, 921, 1129
EgeI	GGCGCC	1 cut(s)	269
EheI	GGCGCC	1 cut(s)	269
ErhI	CCWWGG	4 cut(s)	45, 653, 921, 1129
FaeI	CATG	2 cut(s)	344, 1133
FatI	CATG	2 cut(s)	340, 1129
FauI	CCCGC	2 cut(s)	206, 341
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	173, 271, 480, 519
FokI	GGATG	5 cut(s)	245, 690, 818, 961, 1178
FseI	GGCCGGCC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	173, 271, 480, 519
FspBI	CTAG	3 cut(s)	489, 642, 654
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	2 cut(s)	269, 399
GluI	GCNGC	4 cut(s)	173, 271, 480, 519
GsaI	CCCAGC	2 cut(s)	18, 703
GsuI	CTGGAG	2 cut(s)	72, 1074
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	4 cut(s)	125, 129, 658, 1146
HapII	CCGG	2 cut(s)	126, 707
HhaI	GCGC	2 cut(s)	270, 400
Hin1I	GRCGYC	1 cut(s)	268
Hin1II	CATG	2 cut(s)	344, 1133
Hin6I	GCGC	2 cut(s)	268, 398
HinP1I	GCGC	2 cut(s)	268, 398
HincII	GTYRAC	2 cut(s)	239, 556
HindII	GTYRAC	2 cut(s)	239, 556
HinfI	GANTC	5 cut(s)	142, 665, 981, 1028, 1100
HpaII	CCGG	2 cut(s)	126, 707
HphI	GGTGA	3 cut(s)	164, 439, 704
Hpy166II	GTNNAC	2 cut(s)	239, 556
Hpy188I	TCNGA	9 cut(s)	96, 141, 147, 550, 583, 633, 796, 828, 1105
Hpy188III	TCNNGA	5 cut(s)	119, 226, 245, 260, 707
Hpy8I	GTNNAC	2 cut(s)	239, 556
HpyAV	CCTTC	8 cut(s)	64, 223, 555, 727, 836, 898, 937, 1077
HpyCH4III	ACNGT	3 cut(s)	404, 771, 889
HpyCH4V	TGCA	4 cut(s)	416, 482, 518, 1124
HpyF10VI	GCNNNNNNNGC	5 cut(s)	469, 599, 677, 926, 1047
HpyF3I	CTNAG	8 cut(s)	39, 58, 93, 132, 144, 720, 973, 1073
Hsp92I	GRCGYC	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	344, 1133
HspAI	GCGC	2 cut(s)	268, 398
KasI	GGCGCC	1 cut(s)	267
Kpn2I	TCCGGA	1 cut(s)	706
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
LmnI	GCTCC	3 cut(s)	91, 907, 997
Lsp1109I	GCAGC	3 cut(s)	184, 466, 530
LweI	GCATC	4 cut(s)	145, 491, 505, 712
MabI	ACCWGGT	2 cut(s)	635, 820
MaeI	CTAG	3 cut(s)	489, 642, 654
MaeIII	GTNAC	2 cut(s)	427, 692
MalI	GATC	6 cut(s)	195, 318, 394, 576, 756, 871
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
MboII	GAAGA	2 cut(s)	209, 599
MflI	RGATCY	3 cut(s)	193, 392, 869
MhlI	GDGCHC	1 cut(s)	1052
MluCI	AATT	5 cut(s)	381, 726, 891, 934, 959
Mly113I	GGCGCC	1 cut(s)	268
MlyI	GAGTC	4 cut(s)	136, 674, 990, 1094
MmeI	TCCRAC	2 cut(s)	742, 838
MroI	TCCGGA	1 cut(s)	706
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	2 cut(s)	300, 363
MspI	CCGG	2 cut(s)	126, 707
MspR9I	CCNGG	5 cut(s)	204, 637, 822, 1057, 1092
Mva1269I	GAATGC	3 cut(s)	70, 252, 1126
MvaI	CCWGG	5 cut(s)	204, 637, 822, 1057, 1092
MwoI	GCNNNNNNNGC	5 cut(s)	469, 599, 677, 926, 1047
NaeI	GCCGGC	1 cut(s)	127
NarI	GGCGCC	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	1129
NdeII	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	344, 1133
NlaIV	GGNNCC	4 cut(s)	51, 195, 269, 871
NmuCI	GTSAC	2 cut(s)	427, 692
NsbI	TGCGCA	1 cut(s)	399
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PctI	GAATGC	3 cut(s)	70, 252, 1126
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	1028
PflFI	GACNNNGTC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	1001
PkrI	GCNGC	4 cut(s)	174, 272, 481, 520
PleI	GAGTC	4 cut(s)	136, 673, 989, 1094
PluTI	GGCGCC	1 cut(s)	271
PpsI	GAGTC	4 cut(s)	136, 673, 989, 1094
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	5 cut(s)	202, 635, 820, 1055, 1090
PspFI	CCCAGC	2 cut(s)	14, 699
PspGI	CCWGG	5 cut(s)	202, 635, 820, 1055, 1090
PspN4I	GGNNCC	4 cut(s)	51, 195, 269, 871
PspPI	GGNCC	4 cut(s)	128, 657, 824, 1144
PstNI	CAGNNNCTG	2 cut(s)	139, 821
PsuI	RGATCY	3 cut(s)	193, 392, 869
PsyI	GACNNNGTC	1 cut(s)	637
RigI	GGCCGGCC	1 cut(s)	129
RsaI	GTAC	3 cut(s)	5, 406, 879
RsaNI	GTAC	3 cut(s)	4, 405, 878
RseI	CAYNNNNRTG	2 cut(s)	300, 363
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	4 cut(s)	173, 271, 480, 519
Sau3AI	GATC	6 cut(s)	193, 316, 392, 574, 754, 869
Sau96I	GGNCC	4 cut(s)	128, 657, 824, 1144
SchI	GAGTC	4 cut(s)	136, 674, 990, 1094
ScrFI	CCNGG	5 cut(s)	204, 637, 822, 1057, 1092
SduI	GDGCHC	1 cut(s)	1052
SexAI	ACCWGGT	2 cut(s)	635, 820
SfaNI	GCATC	4 cut(s)	145, 491, 505, 712
SfcI	CTRYAG	1 cut(s)	885
SfoI	GGCGCC	1 cut(s)	269
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	2 cut(s)	300, 363
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	5 cut(s)	381, 726, 891, 934, 959
SsiI	CCGC	7 cut(s)	84, 199, 250, 271, 334, 472, 678
SspDI	GGCGCC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	489, 642, 654
StyD4I	CCNGG	5 cut(s)	202, 635, 820, 1055, 1090
StyI	CCWWGG	4 cut(s)	45, 653, 921, 1129
TaaI	ACNGT	3 cut(s)	404, 771, 889
TaqI	TCGA	3 cut(s)	164, 246, 1118
TasI	AATT	5 cut(s)	381, 726, 891, 934, 959
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	1028
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	3 cut(s)	66, 112, 1087
TseFI	GTSAC	2 cut(s)	427, 692
TseI	GCWGC	3 cut(s)	172, 479, 518
Tsp45I	GTSAC	2 cut(s)	427, 692
TspDTI	ATGAA	2 cut(s)	600, 1122
TspRI	CASTG	3 cut(s)	66, 112, 1087
Tth111I	GACNNNGTC	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	824
XceI	RCATGY	1 cut(s)	344
XmaJI	CCTAGG	1 cut(s)	653
XspI	CTAG	3 cut(s)	489, 642, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.