FvH4_3g00210

Nuclear inhibitor of protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
119860 .. 121731
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00210.t1

Sequence Viewer

Length: 1113 bp
ATGTACGGAAGAGCAGGGCTCGATAGATTCAGGAAAGCGCAGTCCTTGGAGCCCTTCTCGGTGAAGGAAGCTGTTCCTCCGGTGGTGGGGCAGATTGGGGAGGGACAGTCCACATGGCAGCCCCCCGAGTGGGCAACGGAGCCCCGCCCCGGCGTTTATTATCTTCAAGTCTTGAAAGAAGGTCAGCTTGTTGACCGCATTACTCTGGATAAGCGCCGCAACGTCTTCGGCCGCCAGTCTCTTACTTGCGATTATGTGCTTGATCATCAGTCTGTTTCTCGCCAGCATGCTGCTCTTGTTCCTCACAAGAACGGCAGCATATATGTAATTGATTTGGGATCTGCGCACGGCACTTTTGTTGCCAATGAACGCGTGACTAAAGATACCCCTGTTGAGCTTGAAGTGGGGCAGTCTTTGCGGTTTGCTGCATCGACTAGAACCTATGTCTTAAGAAAGGATGATGCAGCTCTTTTCCCTCGCCCTCCTCTGCCTTCCGAGGTTGACCTGCCTCCACCGCCTGATCCATCTGATGAAGAAGCTGTTGTGGCTTATAATACACTTCTTAATCGTTATGGTCTGACCAAGTTGAGCAAACTGCCCAGGCCCAATGTGCCAGCTAACTCCGCAAACATAAAAGGGGGTGACGACACCCAGCATCTGGAGAGAGCGTCTAAGAGAATTAAGAAGGCAAGAGTATCATTTAGGGATCAAGTTGGAGGAGAGTTGGTTGAAGTTGTTGGTATATCAGATGGTGTGCATGTAGAAACAGAACCTGGTCCAATAGGTGTTAAAGAAGGGCAAAGTCTTGTTGGAAAATATGGATCCCTTGTACAGACTACAGTTATACCCAAAGGGAAGGAGCAATCATCTGCAAGGGAAGCAAATACTTCCCAAAAGGGGATGACTGAAAAATTACAACAGCTCTTAAATAGTGTCAAAACTGCTCCTAAAGGTGGGATATATGATGACCTTTATGGAGATTCTTATTCTGGCAAAATGGGCACTTCCTGGGCATATCCTTCACTTAGTTCTGATGAAAAGCCATCAATTGCAAACTACGGCACCGACTCGGGCCAAGTTGATGATGACGAGGATGATTTATTTGGAGACTGA

Protein Analysis

371

Amino Acids

40.39

Weight (kDa)

5.67

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 67 - 138 2.1e-06 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 75 - 141 1e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012083)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
Acc16I TGCGCA 1 cut(s) 345
Acc36I ACCTGC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 1061
AccB7I CCANNNNNTGG 1 cut(s) 658
AccII CGCG 1 cut(s) 372
AciI CCGC 7 cut(s) 145, 196, 217, 232, 418, 515, 624
AclWI GGATC 5 cut(s) 346, 515, 714, 816, 829
AcoI YGGCCR 1 cut(s) 229
AfaI GTAC 2 cut(s) 5, 831
AfiI CCNNNNNNNGG 7 cut(s) 86, 129, 130, 149, 658, 897, 953
AflII CTTAAG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 4 cut(s) 167, 175, 401, 731
AjnI CCWGG 3 cut(s) 599, 772, 1007
AluBI AGCT 7 cut(s) 71, 187, 397, 467, 539, 617, 922
AluI AGCT 7 cut(s) 71, 187, 397, 467, 539, 617, 922
Alw26I GTCTC 2 cut(s) 243, 1101
AlwI GGATC 5 cut(s) 346, 515, 714, 816, 829
AlwNI CAGNNNCTG 2 cut(s) 658, 773
Ama87I CYCGRG 2 cut(s) 125, 1069
AoxI GGCC 3 cut(s) 229, 602, 1072
ApeKI GCWGC 5 cut(s) 118, 290, 315, 425, 464
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 3 cut(s) 40, 216, 346
AspS9I GGNCC 3 cut(s) 603, 776, 1072
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 73, 653
AvaI CYCGRG 2 cut(s) 125, 1069
AvaII GGWCC 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 1004
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BamHI GGATCC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 1061
BanII GRGCYC 3 cut(s) 21, 54, 144
BbsI GAAGAC 1 cut(s) 217
BbvI GCAGC 5 cut(s) 130, 277, 327, 412, 476
BccI CCATC 3 cut(s) 532, 743, 1051
BceAI ACGGC 3 cut(s) 328, 364, 1075
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 3 cut(s) 601, 774, 1009
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 243, 1101
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 217
BfrI CTTAAG 1 cut(s) 448
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 7 cut(s) 119, 217, 232, 291, 316, 426, 465
BlsI GCNGC 7 cut(s) 120, 218, 233, 292, 317, 427, 466
Bme1390I CCNGG 4 cut(s) 150, 601, 774, 1009
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 2 cut(s) 125, 1069
BmgT120I GGNCC 3 cut(s) 603, 776, 1072
BmiI GGNNCC 4 cut(s) 51, 141, 823, 1063
BmrFI CCNGG 4 cut(s) 150, 601, 774, 1009
BmsI GCATC 3 cut(s) 437, 451, 664
BpiI GAAGAC 1 cut(s) 217
BplI GAGNNNNNCTC 3 cut(s) 35, 41, 73
BpmI CTGGAG 1 cut(s) 680
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 5 cut(s) 45, 148, 495, 599, 1008
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 6 cut(s) 92, 122, 653, 683, 711, 741
Bsc4I CCNNNNNNNGG 7 cut(s) 86, 129, 130, 149, 658, 897, 953
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 601, 774, 1009
BseDI CCNNGG 5 cut(s) 45, 148, 495, 599, 1008
BseGI GGATG 3 cut(s) 463, 906, 1099
BseLI CCNNNNNNNGG 7 cut(s) 86, 129, 130, 149, 658, 897, 953
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 474, 732
BseSI GKGCMC 1 cut(s) 1004
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 130, 277, 327, 412, 476
BseYI CCCAGC 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 231, 604, 1074
BshNI GGYRCC 1 cut(s) 1061
BsiEI CGRYCG 1 cut(s) 232
BsiHKCI CYCGRG 2 cut(s) 125, 1069
BsiSI CCGG 2 cut(s) 80, 150
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 7 cut(s) 86, 129, 130, 149, 658, 897, 953
BsmAI GTCTC 2 cut(s) 243, 1101
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 3 cut(s) 231, 604, 1074
BsoBI CYCGRG 2 cut(s) 125, 1069
Bsp1286I GDGCHC 4 cut(s) 21, 54, 144, 1004
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 5 cut(s) 262, 338, 520, 706, 821
BspACI CCGC 7 cut(s) 145, 196, 217, 232, 418, 515, 624
BspANI GGCC 3 cut(s) 231, 604, 1074
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 51, 141, 823, 1063
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 5 cut(s) 346, 515, 714, 816, 829
BspQI GCTCTTC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 1061
BspTI CTTAAG 1 cut(s) 448
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 5 cut(s) 45, 148, 495, 599, 1008
BssMI GATC 5 cut(s) 262, 338, 520, 706, 821
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 3 cut(s) 601, 774, 1009
Bst4CI ACNGT 2 cut(s) 108, 841
Bst6I CTCTTC 1 cut(s) 4
BstAFI CTTAAG 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 415
BstAUI TGTACA 1 cut(s) 829
BstC8I GCNNGC 3 cut(s) 284, 288, 615
BstDEI CTNAG 2 cut(s) 672, 1025
BstF5I GGATG 3 cut(s) 463, 906, 1099
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 3 cut(s) 40, 216, 346
BstKTI GATC 5 cut(s) 265, 341, 523, 709, 824
BstMAI GTCTC 2 cut(s) 243, 1101
BstMBI GATC 5 cut(s) 262, 338, 520, 706, 821
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 7 cut(s) 415, 514, 545, 610, 623, 878, 999
BstNI CCWGG 3 cut(s) 601, 774, 1009
BstNSI RCATGY 2 cut(s) 290, 761
BstSCI CCNGG 4 cut(s) 148, 599, 772, 1007
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 1004
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 5 cut(s) 130, 277, 327, 412, 476
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 2 cut(s) 338, 821
BstYI RGATCY 2 cut(s) 338, 821
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 3 cut(s) 231, 604, 1074
BtsCI GGATG 3 cut(s) 463, 906, 1099
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 284, 288, 615
CaiI CAGNNNCTG 2 cut(s) 658, 773
CfoI GCGC 3 cut(s) 40, 216, 346
Cfr13I GGNCC 3 cut(s) 603, 776, 1072
CseI GACGC 1 cut(s) 657
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 2 cut(s) 4, 830
CviAII CATG 3 cut(s) 114, 287, 758
CviQI GTAC 2 cut(s) 4, 830
DdeI CTNAG 2 cut(s) 672, 1025
DpnI GATC 5 cut(s) 264, 340, 522, 708, 823
DpnII GATC 5 cut(s) 262, 338, 520, 706, 821
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
EclXI CGGCCG 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 3 cut(s) 21, 54, 144
Eco47I GGWCC 1 cut(s) 776
Eco52I CGGCCG 1 cut(s) 229
Eco88I CYCGRG 2 cut(s) 125, 1069
EcoRII CCWGG 3 cut(s) 599, 772, 1007
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 3 cut(s) 21, 54, 144
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 117, 290, 761
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 113, 286, 757
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 7 cut(s) 119, 217, 232, 291, 316, 426, 465
FokI GGATG 3 cut(s) 470, 913, 1106
FriOI GRGCYC 3 cut(s) 21, 54, 144
Fsp4HI GCNGC 7 cut(s) 119, 217, 232, 291, 316, 426, 465
FspBI CTAG 1 cut(s) 435
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 3 cut(s) 39, 215, 345
GluI GCNGC 7 cut(s) 119, 217, 232, 291, 316, 426, 465
GsaI CCCAGC 1 cut(s) 655
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 3 cut(s) 231, 604, 1074
HapII CCGG 2 cut(s) 80, 150
HgaI GACGC 1 cut(s) 657
HhaI GCGC 3 cut(s) 40, 216, 346
Hin1II CATG 3 cut(s) 117, 290, 761
Hin6I GCGC 3 cut(s) 38, 214, 344
HinP1I GCGC 3 cut(s) 38, 214, 344
HincII GTYRAC 2 cut(s) 193, 502
HindII GTYRAC 2 cut(s) 193, 502
HinfI GANTC 3 cut(s) 27, 980, 1067
HpaII CCGG 2 cut(s) 80, 150
HphI GGTGA 2 cut(s) 73, 653
Hpy166II GTNNAC 3 cut(s) 111, 193, 502
Hpy188I TCNGA 5 cut(s) 496, 529, 579, 748, 1033
Hpy188III TCNNGA 4 cut(s) 31, 172, 206, 659
Hpy8I GTNNAC 3 cut(s) 111, 193, 502
HpyAV CCTTC 8 cut(s) 58, 64, 173, 501, 679, 788, 850, 1029
HpyCH4III ACNGT 2 cut(s) 108, 841
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 428, 464, 757, 872, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 415, 514, 545, 610, 623, 878, 999
HpyF3I CTNAG 2 cut(s) 672, 1025
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 3 cut(s) 117, 290, 761
HspAI GCGC 3 cut(s) 38, 214, 344
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 262, 338, 520, 706, 821
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 4 cut(s) 49, 139, 859, 949
Lsp1109I GCAGC 5 cut(s) 130, 277, 327, 412, 476
LweI GCATC 3 cut(s) 437, 451, 664
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 373, 641
MalI GATC 5 cut(s) 264, 340, 522, 708, 823
MboI GATC 5 cut(s) 262, 338, 520, 706, 821
MboII GAAGA 4 cut(s) 21, 155, 217, 545
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 2 cut(s) 338, 821
MhlI GDGCHC 4 cut(s) 21, 54, 144, 1004
MluCI AATT 4 cut(s) 327, 678, 911, 1047
MluI ACGCGT 1 cut(s) 370
MlyI GAGTC 1 cut(s) 1061
MmeI TCCRAC 2 cut(s) 694, 790
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 5 cut(s) 449, 564, 681, 789, 926
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 2 cut(s) 80, 150
MspR9I CCNGG 4 cut(s) 150, 601, 774, 1009
MunI CAATTG 1 cut(s) 1047
MvaI CCWGG 3 cut(s) 601, 774, 1009
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 7 cut(s) 415, 514, 545, 610, 623, 878, 999
NciI CCSGG 1 cut(s) 150
NdeII GATC 5 cut(s) 262, 338, 520, 706, 821
NlaIII CATG 3 cut(s) 117, 290, 761
NlaIV GGNNCC 4 cut(s) 51, 141, 823, 1063
NmuCI GTSAC 2 cut(s) 373, 641
NsbI TGCGCA 1 cut(s) 345
NspI RCATGY 2 cut(s) 290, 761
PaeI GCATGC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 27, 980
PflMI CCANNNNNTGG 1 cut(s) 658
PkrI GCNGC 7 cut(s) 120, 218, 233, 292, 317, 427, 466
PleI GAGTC 1 cut(s) 1061
PpsI GAGTC 1 cut(s) 1061
PsiI TTATAA 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 599, 772, 1007
PspFI CCCAGC 1 cut(s) 651
PspGI CCWGG 3 cut(s) 599, 772, 1007
PspN4I GGNNCC 4 cut(s) 51, 141, 823, 1063
PspPI GGNCC 3 cut(s) 603, 776, 1072
PstNI CAGNNNCTG 2 cut(s) 658, 773
PsuI RGATCY 2 cut(s) 338, 821
RsaI GTAC 2 cut(s) 5, 831
RsaNI GTAC 2 cut(s) 4, 830
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 449, 564, 681, 789, 926
SatI GCNGC 7 cut(s) 119, 217, 232, 291, 316, 426, 465
Sau3AI GATC 5 cut(s) 262, 338, 520, 706, 821
Sau96I GGNCC 3 cut(s) 603, 776, 1072
SchI GAGTC 1 cut(s) 1061
ScrFI CCNGG 4 cut(s) 150, 601, 774, 1009
SduI GDGCHC 4 cut(s) 21, 54, 144, 1004
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 3 cut(s) 437, 451, 664
SfcI CTRYAG 1 cut(s) 837
SinI GGWCC 1 cut(s) 776
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SphI GCATGC 1 cut(s) 290
Sse9I AATT 4 cut(s) 327, 678, 911, 1047
SsiI CCGC 7 cut(s) 145, 196, 217, 232, 418, 515, 624
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 4 cut(s) 148, 599, 772, 1007
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 108, 841
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 21, 431
TasI AATT 4 cut(s) 327, 678, 911, 1047
TatI WGTACW 1 cut(s) 829
TauI GCSGC 2 cut(s) 219, 234
TfiI GAWTC 2 cut(s) 27, 980
Tru1I TTAA 5 cut(s) 449, 564, 681, 789, 926
Tru9I TTAA 5 cut(s) 449, 564, 681, 789, 926
TseFI GTSAC 2 cut(s) 373, 641
TseI GCWGC 5 cut(s) 118, 290, 315, 425, 464
Tsp45I GTSAC 2 cut(s) 373, 641
TspDTI ATGAA 3 cut(s) 381, 546, 1050
TspGWI ACGGA 2 cut(s) 21, 152
Van91I CCANNNNNTGG 1 cut(s) 658
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 776
XceI RCATGY 2 cut(s) 290, 761
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.