Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Forward (+)

19549676 .. 19552267

Gene Structure 2592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAAGCTGCACTGCTTTCTCTTCAGCCCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTTTAACCTCCACAATACACTTACCAGACCTTCTTCTTATGCTCCTCTTCGTGCTCAAAAGTCTGGAATCACAGAAGGTTCTGATTCAGCATTAGAGGCTAAAGTAAGTGAGCAAGAAGTGGGAATGTACCAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGATAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGGCTTCAGAACGAGGGAAACACGCCTCGTAACATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGAAAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCACCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGGATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAGGGAAGCTATGAGAACCTGCAAGCTATAATGGAAGCTGGTGTGAAGTGCCCTTTGCTATTGAAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCAGTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGCAAAATACTTGGAATGGCTACACTTGTGGAGGTCCATGACGAAAGGGAGATGGATCGTGTTCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGAGGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAACTGATCCGTCAAAAAGACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATCGCCTTTGTTCAAGAAGCCGGTGTCAAAGCAGTTTTAGTCGGCGAATCTCTTATTAAACAAAGCGATCCCGGGAAGGCAATCAGCACCCTATTTGGAAGAGATGTCTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

379

Amino Acids

41.97

Weight (kDa)

5.78

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	93 - 357	1.5e-76	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	248
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	3 cut(s)	855, 961, 1085
AcuI	CTGAAG	2 cut(s)	8, 275
AcyI	GRCGYC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	248, 463, 512, 526
AgsI	TTSAA	7 cut(s)	394, 545, 613, 676, 866, 905, 1037
AjnI	CCWGG	1 cut(s)	472
Alw21I	GWGCWC	3 cut(s)	121, 442, 879
Alw26I	GTCTC	2 cut(s)	62, 1135
AlwI	GGATC	3 cut(s)	855, 961, 1085
Ama87I	CYCGRG	1 cut(s)	1094
ApeKI	GCWGC	2 cut(s)	8, 575
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	251, 272, 826
AsuC2I	CCSGG	2 cut(s)	1095, 1096
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	1094
AvaII	GGWCC	3 cut(s)	251, 272, 826
BaeGI	GKGCMC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	879
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	3 cut(s)	121, 442, 879
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	838
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	2 cut(s)	1095, 1096
BcoDI	GTCTC	2 cut(s)	62, 1135
BfuAI	ACCTGC	1 cut(s)	639
BglII	AGATCT	1 cut(s)	919
BisI	GCNGC	2 cut(s)	9, 576
BlsI	GCNGC	2 cut(s)	10, 577
Bme1390I	CCNGG	3 cut(s)	474, 1095, 1096
Bme18I	GGWCC	3 cut(s)	251, 272, 826
BmeT110I	CYCGRG	1 cut(s)	1094
BmgT120I	GGNCC	3 cut(s)	251, 272, 826
BmrFI	CCNGG	3 cut(s)	474, 1095, 1096
BmsI	GCATC	2 cut(s)	721, 894
BpiI	GAAGAC	1 cut(s)	244
BplI	GAGNNNNNCTC	4 cut(s)	364, 396, 861, 893
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	965
BpuMI	CCSGG	2 cut(s)	1095, 1096
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	1094
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 463, 512, 526
Bse118I	RCCGGY	1 cut(s)	1043
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	1094
BseGI	GGATG	1 cut(s)	981
BseLI	CCNNNNNNNGG	4 cut(s)	248, 463, 512, 526
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	374, 477, 512
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	665
BseXI	GCAGC	1 cut(s)	587
BsiHKAI	GWGCWC	3 cut(s)	121, 442, 879
BsiHKCI	CYCGRG	1 cut(s)	1094
BsiSI	CCGG	3 cut(s)	286, 1044, 1095
BslI	CCNNNNNNNGG	4 cut(s)	248, 463, 512, 526
BsmAI	GTCTC	2 cut(s)	62, 1135
BsmBI	CGTCTC	1 cut(s)	62
BsoBI	CYCGRG	1 cut(s)	1094
Bsp1286I	GDGCHC	4 cut(s)	121, 442, 665, 879
Bsp143I	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	3 cut(s)	373, 478, 513
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	3 cut(s)	855, 961, 1085
BsrDI	GCAATG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	1043
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	1043
BssECI	CCNNGG	1 cut(s)	1094
BssMI	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
BssNI	GRCGYC	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	896
Bst6I	CTCTTC	4 cut(s)	27, 117, 321, 1117
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	6 cut(s)	360, 443, 486, 521, 584, 1132
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	981
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	7 cut(s)	333, 449, 747, 850, 922, 969, 1093
BstMAI	GTCTC	2 cut(s)	62, 1135
BstMBI	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	3 cut(s)	472, 1093, 1094
BstSLI	GKGCMC	1 cut(s)	665
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BtsCI	GGATG	1 cut(s)	981
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	1 cut(s)	636
CfoI	GCGC	1 cut(s)	728
Cfr10I	RCCGGY	1 cut(s)	1043
Cfr13I	GGNCC	3 cut(s)	251, 272, 826
Cfr9I	CCCGGG	1 cut(s)	1094
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	4 cut(s)	579, 696, 781, 830
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	6 cut(s)	360, 443, 486, 521, 584, 1132
DpnI	GATC	7 cut(s)	332, 448, 746, 849, 921, 968, 1092
DpnII	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
Eam1104I	CTCTTC	4 cut(s)	27, 117, 321, 1117
EarI	CTCTTC	4 cut(s)	27, 117, 321, 1117
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	877
Eco24I	GRGCYC	1 cut(s)	879
Eco32I	GATATC	1 cut(s)	1024
Eco47I	GGWCC	3 cut(s)	251, 272, 826
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	8, 275
Eco88I	CYCGRG	1 cut(s)	1094
EcoICRI	GAGCTC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	1024
EcoT38I	GRGCYC	1 cut(s)	879
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	4 cut(s)	582, 699, 784, 833
FalI	AAGNNNNNCTT	2 cut(s)	969, 1001
FatI	CATG	4 cut(s)	578, 695, 780, 829
Fnu4HI	GCNGC	2 cut(s)	9, 576
FokI	GGATG	1 cut(s)	968
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	2 cut(s)	9, 576
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	2 cut(s)	9, 576
HapII	CCGG	3 cut(s)	286, 1044, 1095
HhaI	GCGC	1 cut(s)	728
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	582, 699, 784, 833
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HindIII	AAGCTT	2 cut(s)	498, 555
HinfI	GANTC	7 cut(s)	132, 149, 214, 516, 870, 998, 1070
HpaII	CCGG	3 cut(s)	286, 1044, 1095
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	4 cut(s)	148, 294, 363, 1135
Hpy188III	TCNNGA	5 cut(s)	129, 404, 520, 1016, 1037
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	8 cut(s)	40, 45, 105, 134, 391, 559, 860, 1093
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4IV	ACGT	2 cut(s)	55, 267
HpyCH4V	TGCA	7 cut(s)	11, 262, 551, 634, 734, 795, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	6 cut(s)	360, 443, 486, 521, 584, 1132
HpySE526I	ACGT	2 cut(s)	55, 267
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	4 cut(s)	582, 699, 784, 833
HspAI	GCGC	1 cut(s)	726
Kzo9I	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
LmnI	GCTCC	2 cut(s)	112, 572
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	2 cut(s)	721, 894
MaeII	ACGT	2 cut(s)	55, 267
MaeIII	GTNAC	3 cut(s)	314, 756, 896
MalI	GATC	7 cut(s)	332, 448, 746, 849, 921, 968, 1092
MboI	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
MboII	GAAGA	8 cut(s)	14, 90, 104, 249, 338, 406, 1031, 1134
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	4 cut(s)	121, 442, 665, 879
MluCI	AATT	2 cut(s)	546, 861
MlyI	GAGTC	2 cut(s)	223, 879
MmeI	TCCRAC	2 cut(s)	250, 973
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	6 cut(s)	69, 479, 492, 534, 786, 1080
MslI	CAYNNNNRTG	1 cut(s)	986
MspI	CCGG	3 cut(s)	286, 1044, 1095
MspR9I	CCNGG	3 cut(s)	474, 1095, 1096
MunI	CAATTG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	2 cut(s)	1095, 1096
NdeII	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
NlaIII	CATG	4 cut(s)	582, 699, 784, 833
NspI	RCATGY	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	5 cut(s)	132, 149, 516, 998, 1070
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	10, 577
PleI	GAGTC	2 cut(s)	222, 878
PpsI	GAGTC	2 cut(s)	222, 878
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	3 cut(s)	251, 272, 826
PsuI	RGATCY	1 cut(s)	919
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	986
SacI	GAGCTC	1 cut(s)	879
SaqAI	TTAA	6 cut(s)	69, 479, 492, 534, 786, 1080
SatI	GCNGC	2 cut(s)	9, 576
Sau3AI	GATC	7 cut(s)	330, 446, 744, 847, 919, 966, 1090
Sau96I	GGNCC	3 cut(s)	251, 272, 826
SchI	GAGTC	2 cut(s)	223, 879
ScrFI	CCNGG	3 cut(s)	474, 1095, 1096
SduI	GDGCHC	4 cut(s)	121, 442, 665, 879
SfaNI	GCATC	2 cut(s)	721, 894
SinI	GGWCC	3 cut(s)	251, 272, 826
SmaI	CCCGGG	1 cut(s)	1096
SmiMI	CAYNNNNRTG	1 cut(s)	986
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	2 cut(s)	546, 861
SsiI	CCGC	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	879
StyD4I	CCNGG	3 cut(s)	472, 1093, 1094
TaaI	ACNGT	1 cut(s)	896
TaiI	ACGT	2 cut(s)	58, 270
TaqI	TCGA	1 cut(s)	873
TasI	AATT	2 cut(s)	546, 861
TfiI	GAWTC	5 cut(s)	132, 149, 516, 998, 1070
Tru1I	TTAA	6 cut(s)	69, 479, 492, 534, 786, 1080
Tru9I	TTAA	6 cut(s)	69, 479, 492, 534, 786, 1080
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	8, 575
TspDTI	ATGAA	4 cut(s)	216, 380, 421, 673
TspGWI	ACGGA	2 cut(s)	54, 959
TspMI	CCCGGG	1 cut(s)	1094
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	251, 272, 826
XagI	CCTNNNNNAGG	1 cut(s)	524
XceI	RCATGY	1 cut(s)	582
XmaI	CCCGGG	1 cut(s)	1094
XmnI	GAANNNNTTC	1 cut(s)	680
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.