Indole-3-glycerol phosphate synthase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220 |
| fragaria_vesca | FvH4_6g40500 FvH4_6g40500 |
| malus_domestica | MD09G1129300.v1.1 MD17G1118200.v1.1 |
| prunus_persica | Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1 |
| pyrus_communis | pycom09g05250 pycom17g10870 |
| rosa_chinensis | RchiOBHm_Chr5g0011911 |
| rosa_laevigata | RLG00000020861 |
| rosa_multiflora | Rmu_sc0001475.1_g000007 |
| rosa_rugosa | Rorug04G0459800 Rorug04G0459900 |
| rosa_samantha | Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600 |
| rosa_wichuraiana | Rw5G007970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 353 |
| Acc36I | ACCTGC | 1 cut(s) | 411 |
| AccII | CGCG | 1 cut(s) | 114 |
| AciI | CCGC | 7 cut(s) | 66, 212, 242, 254, 449, 895, 1413 |
| AclWI | GGATC | 3 cut(s) | 530, 711, 961 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AcsI | RAATTY | 3 cut(s) | 680, 1259, 1357 |
| AcuI | CTGAAG | 2 cut(s) | 4, 507 |
| AfaI | GTAC | 3 cut(s) | 1186, 1224, 1289 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 248, 409, 512, 823, 1100 |
| AgsI | TTSAA | 6 cut(s) | 397, 545, 905, 947, 1198, 1376 |
| AjnI | CCWGG | 4 cut(s) | 311, 359, 472, 1439 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1345, 1377 |
| Alw21I | GWGCWC | 3 cut(s) | 442, 831, 1435 |
| Alw26I | GTCTC | 2 cut(s) | 972, 1119 |
| Alw44I | GTGCAC | 1 cut(s) | 827 |
| AlwI | GGATC | 3 cut(s) | 530, 711, 961 |
| AoxI | GGCC | 4 cut(s) | 239, 251, 272, 450 |
| ApaLI | GTGCAC | 1 cut(s) | 827 |
| ApeKI | GCWGC | 5 cut(s) | 135, 209, 575, 635, 749 |
| ApoI | RAATTY | 3 cut(s) | 680, 1259, 1357 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1357 |
| AspLEI | GCGC | 2 cut(s) | 116, 217 |
| AspS9I | GGNCC | 5 cut(s) | 24, 251, 272, 847, 1410 |
| AsuC2I | CCSGG | 1 cut(s) | 851 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AsuII | TTCGAA | 1 cut(s) | 1395 |
| AvaII | GGWCC | 3 cut(s) | 24, 847, 1410 |
| BaeGI | GKGCMC | 1 cut(s) | 831 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1206, 1239 |
| BanII | GRGCYC | 2 cut(s) | 442, 1435 |
| Bbv12I | GWGCWC | 3 cut(s) | 442, 831, 1435 |
| BbvI | GCAGC | 5 cut(s) | 147, 196, 562, 647, 736 |
| BccI | CCATC | 5 cut(s) | 68, 1172, 1271, 1313, 1438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BciT130I | CCWGG | 4 cut(s) | 313, 361, 474, 1441 |
| BcnI | CCSGG | 1 cut(s) | 851 |
| BcoDI | GTCTC | 2 cut(s) | 972, 1119 |
| BfaI | CTAG | 2 cut(s) | 924, 1209 |
| BfmI | CTRYAG | 2 cut(s) | 119, 404 |
| BfuAI | ACCTGC | 1 cut(s) | 411 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 250 |
| BisI | GCNGC | 9 cut(s) | 136, 210, 213, 242, 254, 450, 576, 636, 750 |
| BlsI | GCNGC | 9 cut(s) | 137, 211, 214, 243, 255, 451, 577, 637, 751 |
| Bme1390I | CCNGG | 5 cut(s) | 313, 361, 474, 851, 1441 |
| Bme18I | GGWCC | 3 cut(s) | 24, 847, 1410 |
| BmgT120I | GGNCC | 5 cut(s) | 24, 251, 272, 847, 1410 |
| BmiI | GGNNCC | 3 cut(s) | 26, 147, 414 |
| BmrFI | CCNGG | 5 cut(s) | 313, 361, 474, 851, 1441 |
| BmrI | ACTGGG | 1 cut(s) | 258 |
| BmsI | GCATC | 4 cut(s) | 682, 721, 894, 1138 |
| BmuI | ACTGGG | 1 cut(s) | 258 |
| BpmI | CTGGAG | 1 cut(s) | 672 |
| Bpu14I | TTCGAA | 1 cut(s) | 1395 |
| BpuMI | CCSGG | 1 cut(s) | 851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 534 |
| BsaJI | CCNNGG | 2 cut(s) | 311, 473 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1168, 1198 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 248, 409, 512, 823, 1100 |
| Bse118I | RCCGGY | 1 cut(s) | 148 |
| Bse1I | ACTGG | 2 cut(s) | 253, 469 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| Bse8I | GATNNNNATC | 1 cut(s) | 534 |
| BseBI | CCWGG | 4 cut(s) | 313, 361, 474, 1441 |
| BseDI | CCNNGG | 2 cut(s) | 311, 473 |
| BseGI | GGATG | 1 cut(s) | 1449 |
| BseJI | GATNNNNATC | 1 cut(s) | 534 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 248, 409, 512, 823, 1100 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BseMII | CTCAG | 1 cut(s) | 457 |
| BseNI | ACTGG | 2 cut(s) | 253, 469 |
| BseRI | GAGGAG | 3 cut(s) | 250, 341, 405 |
| BseSI | GKGCMC | 1 cut(s) | 831 |
| BseXI | GCAGC | 5 cut(s) | 147, 196, 562, 647, 736 |
| BsgI | GTGCAG | 1 cut(s) | 747 |
| Bsh1236I | CGCG | 1 cut(s) | 114 |
| BshFI | GGCC | 4 cut(s) | 241, 253, 274, 452 |
| BsiHKAI | GWGCWC | 3 cut(s) | 442, 831, 1435 |
| BsiSI | CCGG | 3 cut(s) | 149, 539, 850 |
| BslFI | GGGAC | 1 cut(s) | 10 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 248, 409, 512, 823, 1100 |
| BsmAI | GTCTC | 2 cut(s) | 972, 1119 |
| BsmFI | GGGAC | 1 cut(s) | 10 |
| BsmI | GAATGC | 1 cut(s) | 385 |
| BsnI | GGCC | 4 cut(s) | 241, 253, 274, 452 |
| Bsp119I | TTCGAA | 1 cut(s) | 1395 |
| Bsp1286I | GDGCHC | 3 cut(s) | 442, 831, 1435 |
| Bsp1407I | TGTACA | 1 cut(s) | 1184 |
| Bsp143I | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| BspACI | CCGC | 7 cut(s) | 66, 212, 242, 254, 449, 895, 1413 |
| BspANI | GGCC | 4 cut(s) | 241, 253, 274, 452 |
| BspCNI | CTCAG | 1 cut(s) | 456 |
| BspFNI | CGCG | 1 cut(s) | 114 |
| BspLI | GGNNCC | 3 cut(s) | 26, 147, 414 |
| BspMAI | CTGCAG | 1 cut(s) | 408 |
| BspMI | ACCTGC | 1 cut(s) | 411 |
| BspPI | GGATC | 3 cut(s) | 530, 711, 961 |
| BspT104I | TTCGAA | 1 cut(s) | 1395 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BsrFI | RCCGGY | 1 cut(s) | 148 |
| BsrGI | TGTACA | 1 cut(s) | 1184 |
| BsrI | ACTGG | 2 cut(s) | 253, 469 |
| BssAI | RCCGGY | 1 cut(s) | 148 |
| BssECI | CCNNGG | 2 cut(s) | 311, 473 |
| BssMI | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| Bst2UI | CCWGG | 4 cut(s) | 313, 361, 474, 1441 |
| Bst6I | CTCTTC | 1 cut(s) | 96 |
| BstAUI | TGTACA | 1 cut(s) | 1184 |
| BstBI | TTCGAA | 1 cut(s) | 1395 |
| BstDEI | CTNAG | 2 cut(s) | 443, 584 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 407, 821 |
| BstF5I | GGATG | 1 cut(s) | 1449 |
| BstFNI | CGCG | 1 cut(s) | 114 |
| BstHHI | GCGC | 2 cut(s) | 116, 217 |
| BstKTI | GATC | 6 cut(s) | 231, 333, 538, 719, 969, 1341 |
| BstMAI | GTCTC | 2 cut(s) | 972, 1119 |
| BstMBI | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 250, 259, 446 |
| BstNI | CCWGG | 4 cut(s) | 313, 361, 474, 1441 |
| BstSCI | CCNGG | 5 cut(s) | 311, 359, 472, 849, 1439 |
| BstSFI | CTRYAG | 2 cut(s) | 119, 404 |
| BstSLI | GKGCMC | 1 cut(s) | 831 |
| BstUI | CGCG | 1 cut(s) | 114 |
| BstV1I | GCAGC | 5 cut(s) | 147, 196, 562, 647, 736 |
| BsuRI | GGCC | 4 cut(s) | 241, 253, 274, 452 |
| BtsCI | GGATG | 1 cut(s) | 1449 |
| BtsIMutI | CAGTG | 1 cut(s) | 665 |
| BveI | ACCTGC | 1 cut(s) | 411 |
| CfoI | GCGC | 2 cut(s) | 116, 217 |
| Cfr10I | RCCGGY | 1 cut(s) | 148 |
| Cfr13I | GGNCC | 5 cut(s) | 24, 251, 272, 847, 1410 |
| Csp6I | GTAC | 3 cut(s) | 1185, 1223, 1288 |
| CviAII | CATG | 4 cut(s) | 781, 1182, 1226, 1336 |
| CviQI | GTAC | 3 cut(s) | 1185, 1223, 1288 |
| DdeI | CTNAG | 2 cut(s) | 443, 584 |
| DpnI | GATC | 6 cut(s) | 230, 332, 537, 718, 968, 1340 |
| DpnII | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 353 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 353 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 1 cut(s) | 96 |
| EarI | CTCTTC | 1 cut(s) | 96 |
| EciI | GGCGGA | 1 cut(s) | 55 |
| Ecl136II | GAGCTC | 2 cut(s) | 440, 1433 |
| Eco24I | GRGCYC | 2 cut(s) | 442, 1435 |
| Eco32I | GATATC | 1 cut(s) | 772 |
| Eco47I | GGWCC | 3 cut(s) | 24, 847, 1410 |
| Eco53kI | GAGCTC | 2 cut(s) | 440, 1433 |
| Eco57I | CTGAAG | 2 cut(s) | 4, 507 |
| EcoICRI | GAGCTC | 2 cut(s) | 440, 1433 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 407, 821 |
| EcoO109I | RGGNCCY | 1 cut(s) | 24 |
| EcoRII | CCWGG | 4 cut(s) | 311, 359, 472, 1439 |
| EcoRV | GATATC | 1 cut(s) | 772 |
| EcoT38I | GRGCYC | 2 cut(s) | 442, 1435 |
| FaeI | CATG | 4 cut(s) | 784, 1185, 1229, 1339 |
| FaqI | GGGAC | 1 cut(s) | 10 |
| FatI | CATG | 4 cut(s) | 780, 1181, 1225, 1335 |
| FauNDI | CATATG | 1 cut(s) | 335 |
| Fnu4HI | GCNGC | 9 cut(s) | 136, 210, 213, 242, 254, 450, 576, 636, 750 |
| FriOI | GRGCYC | 2 cut(s) | 442, 1435 |
| Fsp4HI | GCNGC | 9 cut(s) | 136, 210, 213, 242, 254, 450, 576, 636, 750 |
| FspBI | CTAG | 2 cut(s) | 924, 1209 |
| GlaI | GCGC | 2 cut(s) | 115, 216 |
| GluI | GCNGC | 9 cut(s) | 136, 210, 213, 242, 254, 450, 576, 636, 750 |
| GsuI | CTGGAG | 1 cut(s) | 672 |
| HaeIII | GGCC | 4 cut(s) | 241, 253, 274, 452 |
| HapII | CCGG | 3 cut(s) | 149, 539, 850 |
| HhaI | GCGC | 2 cut(s) | 116, 217 |
| Hin1II | CATG | 4 cut(s) | 784, 1185, 1229, 1339 |
| Hin6I | GCGC | 2 cut(s) | 114, 215 |
| HinP1I | GCGC | 2 cut(s) | 114, 215 |
| HindIII | AAGCTT | 4 cut(s) | 498, 555, 800, 938 |
| HinfI | GANTC | 7 cut(s) | 140, 861, 998, 1070, 1142, 1177, 1331 |
| HpaII | CCGG | 3 cut(s) | 149, 539, 850 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 829 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 507, 1147 |
| Hpy188III | TCNNGA | 5 cut(s) | 226, 232, 902, 944, 1016 |
| Hpy8I | GTNNAC | 1 cut(s) | 829 |
| Hpy99I | CGWCG | 1 cut(s) | 1286 |
| HpyAV | CCTTC | 7 cut(s) | 28, 105, 403, 832, 941, 1237, 1362 |
| HpyCH4V | TGCA | 9 cut(s) | 45, 128, 385, 406, 675, 728, 795, 829, 1036 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 250, 259, 446 |
| HpyF3I | CTNAG | 2 cut(s) | 443, 584 |
| Hsp92II | CATG | 4 cut(s) | 784, 1185, 1229, 1339 |
| HspAI | GCGC | 2 cut(s) | 114, 215 |
| Kzo9I | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| LmnI | GCTCC | 6 cut(s) | 62, 145, 418, 437, 572, 1430 |
| Lsp1109I | GCAGC | 5 cut(s) | 147, 196, 562, 647, 736 |
| LweI | GCATC | 4 cut(s) | 682, 721, 894, 1138 |
| MaeI | CTAG | 2 cut(s) | 924, 1209 |
| MaeIII | GTNAC | 2 cut(s) | 776, 1088 |
| MalI | GATC | 6 cut(s) | 230, 332, 537, 718, 968, 1340 |
| MboI | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| MboII | GAAGA | 5 cut(s) | 83, 385, 505, 1159, 1243 |
| MfeI | CAATTG | 1 cut(s) | 1074 |
| MhlI | GDGCHC | 3 cut(s) | 442, 831, 1435 |
| MluCI | AATT | 9 cut(s) | 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391 |
| MlyI | GAGTC | 2 cut(s) | 1079, 1186 |
| MmeI | TCCRAC | 2 cut(s) | 415, 1045 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1357 |
| MseI | TTAA | 5 cut(s) | 786, 804, 1011, 1050, 1349 |
| MslI | CAYNNNNRTG | 1 cut(s) | 986 |
| MspI | CCGG | 3 cut(s) | 149, 539, 850 |
| MspR9I | CCNGG | 5 cut(s) | 313, 361, 474, 851, 1441 |
| MunI | CAATTG | 1 cut(s) | 1074 |
| Mva1269I | GAATGC | 1 cut(s) | 385 |
| MvaI | CCWGG | 4 cut(s) | 313, 361, 474, 1441 |
| MvnI | CGCG | 1 cut(s) | 114 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 250, 259, 446 |
| NciI | CCSGG | 1 cut(s) | 851 |
| NdeI | CATATG | 1 cut(s) | 335 |
| NdeII | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| NlaIII | CATG | 4 cut(s) | 784, 1185, 1229, 1339 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 147, 414 |
| NmuCI | GTSAC | 1 cut(s) | 1088 |
| NspV | TTCGAA | 1 cut(s) | 1395 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 870, 1281 |
| PctI | GAATGC | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1357 |
| PfeI | GAWTC | 5 cut(s) | 140, 861, 998, 1142, 1331 |
| PkrI | GCNGC | 9 cut(s) | 137, 211, 214, 243, 255, 451, 577, 637, 751 |
| PleI | GAGTC | 2 cut(s) | 1078, 1185 |
| PpsI | GAGTC | 2 cut(s) | 1078, 1185 |
| PpuMI | RGGWCCY | 1 cut(s) | 24 |
| Psp124BI | GAGCTC | 2 cut(s) | 442, 1435 |
| Psp5II | RGGWCCY | 1 cut(s) | 24 |
| Psp6I | CCWGG | 4 cut(s) | 311, 359, 472, 1439 |
| PspGI | CCWGG | 4 cut(s) | 311, 359, 472, 1439 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 147, 414 |
| PspPI | GGNCC | 5 cut(s) | 24, 251, 272, 847, 1410 |
| PspPPI | RGGWCCY | 1 cut(s) | 24 |
| PstI | CTGCAG | 1 cut(s) | 408 |
| RsaI | GTAC | 3 cut(s) | 1186, 1224, 1289 |
| RsaNI | GTAC | 3 cut(s) | 1185, 1223, 1288 |
| RseI | CAYNNNNRTG | 1 cut(s) | 986 |
| SacI | GAGCTC | 2 cut(s) | 442, 1435 |
| SaqAI | TTAA | 5 cut(s) | 786, 804, 1011, 1050, 1349 |
| SatI | GCNGC | 9 cut(s) | 136, 210, 213, 242, 254, 450, 576, 636, 750 |
| Sau3AI | GATC | 6 cut(s) | 228, 330, 535, 716, 966, 1338 |
| Sau96I | GGNCC | 5 cut(s) | 24, 251, 272, 847, 1410 |
| SchI | GAGTC | 2 cut(s) | 1079, 1186 |
| ScrFI | CCNGG | 5 cut(s) | 313, 361, 474, 851, 1441 |
| SduI | GDGCHC | 3 cut(s) | 442, 831, 1435 |
| SfaNI | GCATC | 4 cut(s) | 682, 721, 894, 1138 |
| SfcI | CTRYAG | 2 cut(s) | 119, 404 |
| SfuI | TTCGAA | 1 cut(s) | 1395 |
| SinI | GGWCC | 3 cut(s) | 24, 847, 1410 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 986 |
| Sse9I | AATT | 9 cut(s) | 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391 |
| SsiI | CCGC | 7 cut(s) | 66, 212, 242, 254, 449, 895, 1413 |
| SspI | AATATT | 1 cut(s) | 1203 |
| SspMI | CTAG | 2 cut(s) | 924, 1209 |
| SstI | GAGCTC | 2 cut(s) | 442, 1435 |
| StyD4I | CCNGG | 5 cut(s) | 311, 359, 472, 849, 1439 |
| TaqI | TCGA | 7 cut(s) | 286, 715, 768, 864, 873, 912, 1395 |
| TasI | AATT | 9 cut(s) | 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391 |
| TatI | WGTACW | 3 cut(s) | 1184, 1222, 1287 |
| TauI | GCSGC | 4 cut(s) | 215, 244, 256, 452 |
| TfiI | GAWTC | 5 cut(s) | 140, 861, 998, 1142, 1331 |
| Tru1I | TTAA | 5 cut(s) | 786, 804, 1011, 1050, 1349 |
| Tru9I | TTAA | 5 cut(s) | 786, 804, 1011, 1050, 1349 |
| TscAI | CASTG | 1 cut(s) | 665 |
| TseFI | GTSAC | 1 cut(s) | 1088 |
| TseI | GCWGC | 5 cut(s) | 135, 209, 575, 635, 749 |
| Tsp45I | GTSAC | 1 cut(s) | 1088 |
| TspDTI | ATGAA | 5 cut(s) | 471, 576, 615, 639, 1272 |
| TspGWI | ACGGA | 2 cut(s) | 959, 1123 |
| TspRI | CASTG | 1 cut(s) | 665 |
| VneI | GTGCAC | 1 cut(s) | 827 |
| VpaK11BI | GGWCC | 3 cut(s) | 24, 847, 1410 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 407, 821 |
| XapI | RAATTY | 3 cut(s) | 680, 1259, 1357 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 319 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1357 |
| XspI | CTAG | 2 cut(s) | 924, 1209 |