RLG00000020861

Indole-3-glycerol phosphate synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
69623499 .. 69627103
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020861

Sequence Viewer

Length: 1452 bp
ATGGAGGGTTTAGCTTCCTTCAGGTCCCTCCCTTGTTTCACTTGCAGACCCAAACGCTCCATCTCCGCCACCAGACCCAACTCCCTCTCTCTTCCTTCCTCCACCATTGTTCGCGCTCTACAGGTTGCAATGGGCAGCGAATCGGAGCCGGTGAAAGACGAGCTGAAAATCAAGGAGTGGGAGGTGGGTATGTTTCACAACGAAGTTGCTGCGGCGCAGGGTATCAAGATCAGGAGGAGGCCGCCGACTGGGCCGCCCAAGCACTATGTTGGGCCTTTTGAGTTTCGATTGGAGAATGAGGGCAATACTCCCAGGAATATCTTGGAGGAGATCATATGGCACAAGGACACAGAAGTCGCCAGGTGGAGAGAGAAGAAGCCTCTGCATTCGTTATTGAAAGACCTGCAGAAGGCTCCTCCTGTTAGGGATTTTGTTGGAGCTCTCAGGGCGGCCAATGAAAGAACTGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAAGCTTCTCCGAGTAGAGGGGTTTTGAGAGAGGATTTTGATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATGAAAATATGGCAGCAATAAGAAATGCTGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATTGTTGATGCTTGGCAAATCTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTATTGATTGCTGCTGTTTTGCCTGACCTCGATATCGGTTACATGATTAAGATATGCAAGAAGCTTAAAATGGCAACCCTTGTTGAGGTGCACGATGAGAAGGAAATGGACCGGGTTCTTGGAATCGAGGGGGTCGAGTTTATTGGCATCAACAACCGCAATCTTGAAACATTCGAGGTTGATACTAGCAACACAAAAAAGCTTCTTGAAGGAAAGCGTGGCGAAGTGATCCGTGAAAGAGACATAATTGTGGTAGGAGAATCTGGGCTGTTTAATCCTGATGACATAGCTTATGTGCAAAAAGCTGGTGTTAAAGCAATTTTGGTTGGAGAGTCAATTGTGAAACAGAGTGACCCCAAGAAAGGAATAGCTCAACTTTTTGGTAGAGACATTTCCGTTGATGATTCTGATGCTAATATCCATTCCATCTTCTTGTGGAGTCCATGTACAAGAGAGTTCAAAATATTACCTAGTGATACTAAAGTACATGGGAAGAAAGTAGAGAAGGTAGTGAGGTATGAATTTGGTTATGACTACGATGGCGACGAGTACAAGGTGGCAATTACATTGGTTGATGACGATGGTGTTTATGATTCCATGATCTACAAGTTAAGAAAAAATTCTTGGAGAAGGATTGAAAACTATTCTCATCAATTCGAAACTCTTACAAGGTCCGCAACATTTGTAAGTGGAGCTCTAACCTGGATGGAATAA

Protein Analysis

484

Amino Acids

54.29

Weight (kDa)

6.33

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IGPS PF00218 108 - 372 7.5e-76 Indole-3-glycerol phosphate synthase
FBA_1 PF07734 387 - 482 8.6e-06 F-box associated beta propeller domain
FBA_3 PF08268 390 - 479 7.5e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 411
AccII CGCG 1 cut(s) 114
AciI CCGC 7 cut(s) 66, 212, 242, 254, 449, 895, 1413
AclWI GGATC 3 cut(s) 530, 711, 961
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 3 cut(s) 680, 1259, 1357
AcuI CTGAAG 2 cut(s) 4, 507
AfaI GTAC 3 cut(s) 1186, 1224, 1289
AfiI CCNNNNNNNGG 5 cut(s) 248, 409, 512, 823, 1100
AgsI TTSAA 6 cut(s) 397, 545, 905, 947, 1198, 1376
AjnI CCWGG 4 cut(s) 311, 359, 472, 1439
AjuI GAANNNNNNNTTGG 2 cut(s) 1345, 1377
Alw21I GWGCWC 3 cut(s) 442, 831, 1435
Alw26I GTCTC 2 cut(s) 972, 1119
Alw44I GTGCAC 1 cut(s) 827
AlwI GGATC 3 cut(s) 530, 711, 961
AoxI GGCC 4 cut(s) 239, 251, 272, 450
ApaLI GTGCAC 1 cut(s) 827
ApeKI GCWGC 5 cut(s) 135, 209, 575, 635, 749
ApoI RAATTY 3 cut(s) 680, 1259, 1357
Asp700I GAANNNNTTC 1 cut(s) 1357
AspLEI GCGC 2 cut(s) 116, 217
AspS9I GGNCC 5 cut(s) 24, 251, 272, 847, 1410
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 1 cut(s) 163
AsuII TTCGAA 1 cut(s) 1395
AvaII GGWCC 3 cut(s) 24, 847, 1410
BaeGI GKGCMC 1 cut(s) 831
BaeI ACNNNNGTAYC 2 cut(s) 1206, 1239
BanII GRGCYC 2 cut(s) 442, 1435
Bbv12I GWGCWC 3 cut(s) 442, 831, 1435
BbvI GCAGC 5 cut(s) 147, 196, 562, 647, 736
BccI CCATC 5 cut(s) 68, 1172, 1271, 1313, 1438
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 4 cut(s) 313, 361, 474, 1441
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 2 cut(s) 972, 1119
BfaI CTAG 2 cut(s) 924, 1209
BfmI CTRYAG 2 cut(s) 119, 404
BfuAI ACCTGC 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 250
BisI GCNGC 9 cut(s) 136, 210, 213, 242, 254, 450, 576, 636, 750
BlsI GCNGC 9 cut(s) 137, 211, 214, 243, 255, 451, 577, 637, 751
Bme1390I CCNGG 5 cut(s) 313, 361, 474, 851, 1441
Bme18I GGWCC 3 cut(s) 24, 847, 1410
BmgT120I GGNCC 5 cut(s) 24, 251, 272, 847, 1410
BmiI GGNNCC 3 cut(s) 26, 147, 414
BmrFI CCNGG 5 cut(s) 313, 361, 474, 851, 1441
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 4 cut(s) 682, 721, 894, 1138
BmuI ACTGGG 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 672
Bpu14I TTCGAA 1 cut(s) 1395
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 311, 473
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 1168, 1198
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 409, 512, 823, 1100
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 2 cut(s) 253, 469
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 4 cut(s) 313, 361, 474, 1441
BseDI CCNNGG 2 cut(s) 311, 473
BseGI GGATG 1 cut(s) 1449
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 5 cut(s) 248, 409, 512, 823, 1100
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 2 cut(s) 253, 469
BseRI GAGGAG 3 cut(s) 250, 341, 405
BseSI GKGCMC 1 cut(s) 831
BseXI GCAGC 5 cut(s) 147, 196, 562, 647, 736
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 241, 253, 274, 452
BsiHKAI GWGCWC 3 cut(s) 442, 831, 1435
BsiSI CCGG 3 cut(s) 149, 539, 850
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 5 cut(s) 248, 409, 512, 823, 1100
BsmAI GTCTC 2 cut(s) 972, 1119
BsmFI GGGAC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 241, 253, 274, 452
Bsp119I TTCGAA 1 cut(s) 1395
Bsp1286I GDGCHC 3 cut(s) 442, 831, 1435
Bsp1407I TGTACA 1 cut(s) 1184
Bsp143I GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
BspACI CCGC 7 cut(s) 66, 212, 242, 254, 449, 895, 1413
BspANI GGCC 4 cut(s) 241, 253, 274, 452
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 3 cut(s) 26, 147, 414
BspMAI CTGCAG 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 3 cut(s) 530, 711, 961
BspT104I TTCGAA 1 cut(s) 1395
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 1184
BsrI ACTGG 2 cut(s) 253, 469
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 311, 473
BssMI GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
Bst2UI CCWGG 4 cut(s) 313, 361, 474, 1441
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 1184
BstBI TTCGAA 1 cut(s) 1395
BstDEI CTNAG 2 cut(s) 443, 584
BstENI CCTNNNNNAGG 2 cut(s) 407, 821
BstF5I GGATG 1 cut(s) 1449
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 2 cut(s) 116, 217
BstKTI GATC 6 cut(s) 231, 333, 538, 719, 969, 1341
BstMAI GTCTC 2 cut(s) 972, 1119
BstMBI GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
BstMWI GCNNNNNNNGC 3 cut(s) 250, 259, 446
BstNI CCWGG 4 cut(s) 313, 361, 474, 1441
BstSCI CCNGG 5 cut(s) 311, 359, 472, 849, 1439
BstSFI CTRYAG 2 cut(s) 119, 404
BstSLI GKGCMC 1 cut(s) 831
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 5 cut(s) 147, 196, 562, 647, 736
BsuRI GGCC 4 cut(s) 241, 253, 274, 452
BtsCI GGATG 1 cut(s) 1449
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 411
CfoI GCGC 2 cut(s) 116, 217
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 5 cut(s) 24, 251, 272, 847, 1410
Csp6I GTAC 3 cut(s) 1185, 1223, 1288
CviAII CATG 4 cut(s) 781, 1182, 1226, 1336
CviQI GTAC 3 cut(s) 1185, 1223, 1288
DdeI CTNAG 2 cut(s) 443, 584
DpnI GATC 6 cut(s) 230, 332, 537, 718, 968, 1340
DpnII GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 2 cut(s) 440, 1433
Eco24I GRGCYC 2 cut(s) 442, 1435
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 3 cut(s) 24, 847, 1410
Eco53kI GAGCTC 2 cut(s) 440, 1433
Eco57I CTGAAG 2 cut(s) 4, 507
EcoICRI GAGCTC 2 cut(s) 440, 1433
EcoNI CCTNNNNNAGG 2 cut(s) 407, 821
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 311, 359, 472, 1439
EcoRV GATATC 1 cut(s) 772
EcoT38I GRGCYC 2 cut(s) 442, 1435
FaeI CATG 4 cut(s) 784, 1185, 1229, 1339
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 780, 1181, 1225, 1335
FauNDI CATATG 1 cut(s) 335
Fnu4HI GCNGC 9 cut(s) 136, 210, 213, 242, 254, 450, 576, 636, 750
FriOI GRGCYC 2 cut(s) 442, 1435
Fsp4HI GCNGC 9 cut(s) 136, 210, 213, 242, 254, 450, 576, 636, 750
FspBI CTAG 2 cut(s) 924, 1209
GlaI GCGC 2 cut(s) 115, 216
GluI GCNGC 9 cut(s) 136, 210, 213, 242, 254, 450, 576, 636, 750
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 4 cut(s) 241, 253, 274, 452
HapII CCGG 3 cut(s) 149, 539, 850
HhaI GCGC 2 cut(s) 116, 217
Hin1II CATG 4 cut(s) 784, 1185, 1229, 1339
Hin6I GCGC 2 cut(s) 114, 215
HinP1I GCGC 2 cut(s) 114, 215
HindIII AAGCTT 4 cut(s) 498, 555, 800, 938
HinfI GANTC 7 cut(s) 140, 861, 998, 1070, 1142, 1177, 1331
HpaII CCGG 3 cut(s) 149, 539, 850
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 829
Hpy188I TCNGA 3 cut(s) 145, 507, 1147
Hpy188III TCNNGA 5 cut(s) 226, 232, 902, 944, 1016
Hpy8I GTNNAC 1 cut(s) 829
Hpy99I CGWCG 1 cut(s) 1286
HpyAV CCTTC 7 cut(s) 28, 105, 403, 832, 941, 1237, 1362
HpyCH4V TGCA 9 cut(s) 45, 128, 385, 406, 675, 728, 795, 829, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 259, 446
HpyF3I CTNAG 2 cut(s) 443, 584
Hsp92II CATG 4 cut(s) 784, 1185, 1229, 1339
HspAI GCGC 2 cut(s) 114, 215
Kzo9I GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
LmnI GCTCC 6 cut(s) 62, 145, 418, 437, 572, 1430
Lsp1109I GCAGC 5 cut(s) 147, 196, 562, 647, 736
LweI GCATC 4 cut(s) 682, 721, 894, 1138
MaeI CTAG 2 cut(s) 924, 1209
MaeIII GTNAC 2 cut(s) 776, 1088
MalI GATC 6 cut(s) 230, 332, 537, 718, 968, 1340
MboI GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
MboII GAAGA 5 cut(s) 83, 385, 505, 1159, 1243
MfeI CAATTG 1 cut(s) 1074
MhlI GDGCHC 3 cut(s) 442, 831, 1435
MluCI AATT 9 cut(s) 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391
MlyI GAGTC 2 cut(s) 1079, 1186
MmeI TCCRAC 2 cut(s) 415, 1045
MroXI GAANNNNTTC 1 cut(s) 1357
MseI TTAA 5 cut(s) 786, 804, 1011, 1050, 1349
MslI CAYNNNNRTG 1 cut(s) 986
MspI CCGG 3 cut(s) 149, 539, 850
MspR9I CCNGG 5 cut(s) 313, 361, 474, 851, 1441
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 4 cut(s) 313, 361, 474, 1441
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 250, 259, 446
NciI CCSGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 335
NdeII GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
NlaIII CATG 4 cut(s) 784, 1185, 1229, 1339
NlaIV GGNNCC 3 cut(s) 26, 147, 414
NmuCI GTSAC 1 cut(s) 1088
NspV TTCGAA 1 cut(s) 1395
PcsI WCGNNNNNNNCGW 2 cut(s) 870, 1281
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 1357
PfeI GAWTC 5 cut(s) 140, 861, 998, 1142, 1331
PkrI GCNGC 9 cut(s) 137, 211, 214, 243, 255, 451, 577, 637, 751
PleI GAGTC 2 cut(s) 1078, 1185
PpsI GAGTC 2 cut(s) 1078, 1185
PpuMI RGGWCCY 1 cut(s) 24
Psp124BI GAGCTC 2 cut(s) 442, 1435
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 4 cut(s) 311, 359, 472, 1439
PspGI CCWGG 4 cut(s) 311, 359, 472, 1439
PspN4I GGNNCC 3 cut(s) 26, 147, 414
PspPI GGNCC 5 cut(s) 24, 251, 272, 847, 1410
PspPPI RGGWCCY 1 cut(s) 24
PstI CTGCAG 1 cut(s) 408
RsaI GTAC 3 cut(s) 1186, 1224, 1289
RsaNI GTAC 3 cut(s) 1185, 1223, 1288
RseI CAYNNNNRTG 1 cut(s) 986
SacI GAGCTC 2 cut(s) 442, 1435
SaqAI TTAA 5 cut(s) 786, 804, 1011, 1050, 1349
SatI GCNGC 9 cut(s) 136, 210, 213, 242, 254, 450, 576, 636, 750
Sau3AI GATC 6 cut(s) 228, 330, 535, 716, 966, 1338
Sau96I GGNCC 5 cut(s) 24, 251, 272, 847, 1410
SchI GAGTC 2 cut(s) 1079, 1186
ScrFI CCNGG 5 cut(s) 313, 361, 474, 851, 1441
SduI GDGCHC 3 cut(s) 442, 831, 1435
SfaNI GCATC 4 cut(s) 682, 721, 894, 1138
SfcI CTRYAG 2 cut(s) 119, 404
SfuI TTCGAA 1 cut(s) 1395
SinI GGWCC 3 cut(s) 24, 847, 1410
SmiMI CAYNNNNRTG 1 cut(s) 986
Sse9I AATT 9 cut(s) 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391
SsiI CCGC 7 cut(s) 66, 212, 242, 254, 449, 895, 1413
SspI AATATT 1 cut(s) 1203
SspMI CTAG 2 cut(s) 924, 1209
SstI GAGCTC 2 cut(s) 442, 1435
StyD4I CCNGG 5 cut(s) 311, 359, 472, 849, 1439
TaqI TCGA 7 cut(s) 286, 715, 768, 864, 873, 912, 1395
TasI AATT 9 cut(s) 546, 680, 984, 1056, 1074, 1259, 1299, 1357, 1391
TatI WGTACW 3 cut(s) 1184, 1222, 1287
TauI GCSGC 4 cut(s) 215, 244, 256, 452
TfiI GAWTC 5 cut(s) 140, 861, 998, 1142, 1331
Tru1I TTAA 5 cut(s) 786, 804, 1011, 1050, 1349
Tru9I TTAA 5 cut(s) 786, 804, 1011, 1050, 1349
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 5 cut(s) 135, 209, 575, 635, 749
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 5 cut(s) 471, 576, 615, 639, 1272
TspGWI ACGGA 2 cut(s) 959, 1123
TspRI CASTG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 827
VpaK11BI GGWCC 3 cut(s) 24, 847, 1410
XagI CCTNNNNNAGG 2 cut(s) 407, 821
XapI RAATTY 3 cut(s) 680, 1259, 1357
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 1357
XspI CTAG 2 cut(s) 924, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.