Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Reverse (-)

8527161 .. 8528303

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGGGTTTAGCTTCCGTCAGGGCTGTCCCTTTTTTCACTTGCAGACCCAAACGCTCCATCTCCGGCACCAGACCTAGCTCGCTCTCTCTTCCTTCCTCTACCATTGTTCGAGCTCAACAGGTTGCAATGGCTAGCGAATTGGAGCCGATAAAAGACATGCTGAAAATCAAAGTGGGGGAGGTGGGTTTGTTGCACAACGAAGTTGCCGCGGCGCAGGGCATCAAAATCAGGAGGAGGCCACCGACAGGGTCACCTAAGCACTATGTTGGGCCTTTCGAGTTTCGATTAGAGGATGAGGGCAATACTCCGAGGAATATCTTGGAGGAGATCATATGGCACAAGGACATAGAAGTCGCCAGGTGGAGAGAGAAAAAGCCTCTGCATTCGTTATTGAAAGACTTGCAGAAGGCTCCCCCTGTTAGAGATTTTGTTGGAGCTCTCAGAGCGGTCAATGAAAGAACCGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAGGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTCAATCCGGTTGAAATTGCCCGAGCTTATGAAAGGGGGGGAGCTTCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATGAAAATATGGCAGCAGTAAGAAATGCAGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATCATTGATGCTTGGCAAATCTACCATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGATTGCTGCTGTTTTGCCCGACCTCGATATTAGTTACATGATTAAGATATGCAAGAAGCTTAAAATGGCAACCCTTGTTGAGGTTCATGATGAGAAGGAAATGGACCGTGTTCTTAGAATCAAGGGGGTTGAGTTTATTGGCATCAACAACCGCAATCTTGAAACATTTGAAGTTGATACTAGTAACACAAAGAAGCTGCTTGAAGGAAAGCGTGGCGAAATTATCCGTGAAAGAGACATAATTGTGGTAGGAGAATCTGGGCTGTTTACTCCTGATGACATTGCATATGTGCAAGAAGCTGGTGTTAAAGCGGTTTTGGTTGGAGAGTCAATTGTGAAACAGAGTGACCTGAAAAAAGGAATAGCTCAACTTTTCGGTAGAGACATTTCCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

380

Amino Acids

42.26

Weight (kDa)

8.92

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	108 - 372	3.9e-78	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	449
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	210, 212, 449, 895, 1055
AclWI	GGATC	1 cut(s)	711
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	507
AfiI	CCNNNNNNNGG	3 cut(s)	248, 512, 823
AgsI	TTSAA	6 cut(s)	397, 535, 545, 905, 914, 947
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	2 cut(s)	359, 472
Alw21I	GWGCWC	2 cut(s)	118, 442
Alw26I	GTCTC	2 cut(s)	972, 1119
AlwI	GGATC	1 cut(s)	711
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	2 cut(s)	239, 272
ApeKI	GCWGC	3 cut(s)	635, 749, 940
ApoI	RAATTY	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	272, 847
AsuHPI	GGTGA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	847
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	118, 442
Bbv12I	GWGCWC	2 cut(s)	118, 442
BbvI	GCAGC	3 cut(s)	647, 736, 927
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	361, 474
BcoDI	GTCTC	2 cut(s)	972, 1119
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	3 cut(s)	78, 135, 924
BisI	GCNGC	5 cut(s)	210, 213, 636, 750, 941
BlsI	GCNGC	5 cut(s)	211, 214, 637, 751, 942
Bme1390I	CCNGG	2 cut(s)	361, 474
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	2 cut(s)	272, 847
BmiI	GGNNCC	3 cut(s)	70, 147, 414
BmrFI	CCNGG	2 cut(s)	361, 474
BmsI	GCATC	4 cut(s)	231, 682, 721, 894
BmtI	GCTAGC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	3 cut(s)	210, 311, 473
BsaWI	WCCGGW	2 cut(s)	464, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 512, 823
Bse3DI	GCAATG	2 cut(s)	135, 1023
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	361, 474
BseDI	CCNNGG	3 cut(s)	210, 311, 473
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	248, 512, 823
BseMI	GCAATG	2 cut(s)	135, 1023
BseMII	CTCAG	1 cut(s)	457
BseRI	GAGGAG	3 cut(s)	250, 341, 528
BseXI	GCAGC	3 cut(s)	647, 736, 927
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	241, 274
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	118, 442
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	3 cut(s)	66, 465, 539
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	248, 512, 823
BsmAI	GTCTC	2 cut(s)	972, 1119
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	241, 274
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	118, 442
Bsp143I	GATC	2 cut(s)	330, 716
BspACI	CCGC	5 cut(s)	210, 212, 449, 895, 1055
BspANI	GGCC	2 cut(s)	241, 274
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	70, 147, 414
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	711
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	2 cut(s)	135, 1023
BssECI	CCNNGG	3 cut(s)	210, 311, 473
BssMI	GATC	2 cut(s)	330, 716
Bst2UI	CCWGG	2 cut(s)	361, 474
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	83, 136
BstDEI	CTNAG	4 cut(s)	258, 443, 584, 857
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	333, 719
BstMAI	GTCTC	2 cut(s)	972, 1119
BstMBI	GATC	2 cut(s)	330, 716
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	361, 474
BstNSI	RCATGY	1 cut(s)	163
BstPI	GGTNACC	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	359, 472
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	647, 736, 927
BsuRI	GGCC	2 cut(s)	241, 274
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	665
Cac8I	GCNNGC	2 cut(s)	83, 136
CciI	TCATGA	1 cut(s)	829
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	272, 847
Cfr42I	CCGCGG	1 cut(s)	213
CviAII	CATG	4 cut(s)	160, 710, 781, 830
DdeI	CTNAG	4 cut(s)	258, 443, 584, 857
DpnI	GATC	2 cut(s)	332, 718
DpnII	GATC	2 cut(s)	330, 716
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	116, 440
Eco24I	GRGCYC	2 cut(s)	118, 442
Eco47I	GGWCC	1 cut(s)	847
Eco53kI	GAGCTC	2 cut(s)	116, 440
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	116, 440
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	359, 472
EcoT38I	GRGCYC	2 cut(s)	118, 442
FaeI	CATG	4 cut(s)	163, 713, 784, 833
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	4 cut(s)	159, 709, 780, 829
FauNDI	CATATG	2 cut(s)	335, 1030
Fnu4HI	GCNGC	5 cut(s)	210, 213, 636, 750, 941
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	2 cut(s)	118, 442
Fsp4HI	GCNGC	5 cut(s)	210, 213, 636, 750, 941
FspBI	CTAG	3 cut(s)	78, 135, 924
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	5 cut(s)	210, 213, 636, 750, 941
HaeIII	GGCC	2 cut(s)	241, 274
HapII	CCGG	3 cut(s)	66, 465, 539
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	4 cut(s)	163, 713, 784, 833
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	3 cut(s)	861, 998, 1070
HpaII	CCGG	3 cut(s)	66, 465, 539
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	1011
Hpy188I	TCNGA	4 cut(s)	312, 446, 507, 1142
Hpy188III	TCNNGA	4 cut(s)	232, 830, 902, 1016
Hpy8I	GTNNAC	1 cut(s)	1011
HpyAV	CCTTC	5 cut(s)	105, 403, 490, 832, 941
HpyCH4III	ACNGT	1 cut(s)	851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	4 cut(s)	258, 443, 584, 857
Hsp92II	CATG	4 cut(s)	163, 713, 784, 833
HspAI	GCGC	1 cut(s)	215
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	330, 716
LmnI	GCTCC	5 cut(s)	62, 145, 418, 437, 572
Lsp1109I	GCAGC	3 cut(s)	647, 736, 927
LweI	GCATC	4 cut(s)	231, 682, 721, 894
MaeI	CTAG	3 cut(s)	78, 135, 924
MaeIII	GTNAC	4 cut(s)	252, 776, 926, 1088
MalI	GATC	2 cut(s)	332, 718
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	2 cut(s)	330, 716
MboII	GAAGA	2 cut(s)	83, 505
MfeI	CAATTG	1 cut(s)	1074
MhlI	GDGCHC	2 cut(s)	118, 442
MluCI	AATT	6 cut(s)	140, 546, 680, 963, 984, 1074
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	2 cut(s)	415, 1045
MseI	TTAA	3 cut(s)	786, 804, 1050
MslI	CAYNNNNRTG	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	66, 465, 539
MspR9I	CCNGG	2 cut(s)	361, 474
MunI	CAATTG	1 cut(s)	1074
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	361, 474
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeI	CATATG	2 cut(s)	335, 1030
NdeII	GATC	2 cut(s)	330, 716
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	4 cut(s)	163, 713, 784, 833
NlaIV	GGNNCC	3 cut(s)	70, 147, 414
NmuCI	GTSAC	2 cut(s)	252, 1088
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	1 cut(s)	829
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	861, 998
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	211, 214, 637, 751, 942
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
Psp124BI	GAGCTC	2 cut(s)	118, 442
Psp6I	CCWGG	2 cut(s)	359, 472
PspEI	GGTNACC	1 cut(s)	252
PspGI	CCWGG	2 cut(s)	359, 472
PspN4I	GGNNCC	3 cut(s)	70, 147, 414
PspPI	GGNCC	2 cut(s)	272, 847
PsyI	GACNNNGTC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	986
SacI	GAGCTC	2 cut(s)	118, 442
SacII	CCGCGG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	786, 804, 1050
SatI	GCNGC	5 cut(s)	210, 213, 636, 750, 941
Sau3AI	GATC	2 cut(s)	330, 716
Sau96I	GGNCC	2 cut(s)	272, 847
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	2 cut(s)	361, 474
SduI	GDGCHC	2 cut(s)	118, 442
SfaNI	GCATC	4 cut(s)	231, 682, 721, 894
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	986
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	6 cut(s)	140, 546, 680, 963, 984, 1074
SsiI	CCGC	5 cut(s)	210, 212, 449, 895, 1055
SspMI	CTAG	3 cut(s)	78, 135, 924
SstI	GAGCTC	2 cut(s)	118, 442
StyD4I	CCNGG	2 cut(s)	359, 472
TaaI	ACNGT	1 cut(s)	851
TaqI	TCGA	5 cut(s)	112, 279, 286, 715, 768
TasI	AATT	6 cut(s)	140, 546, 680, 963, 984, 1074
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	2 cut(s)	861, 998
Tru1I	TTAA	3 cut(s)	786, 804, 1050
Tru9I	TTAA	3 cut(s)	786, 804, 1050
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	2 cut(s)	252, 1088
TseI	GCWGC	3 cut(s)	635, 749, 940
Tsp45I	GTSAC	2 cut(s)	252, 1088
TspDTI	ATGAA	5 cut(s)	471, 576, 615, 639, 818
TspGWI	ACGGA	2 cut(s)	7, 959
TspRI	CASTG	1 cut(s)	665
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	847
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	3 cut(s)	78, 135, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.