Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Forward (+)

32001069 .. 32004277

Gene Structure 3209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGGGTTTAGCTTCCATCAGGTCCGTCCCTTCCTTCACTTGCAGACCCAACCGCTCCATCTCCGGCGCTACACCCGTCTCGCTCTCTCTTCCTTCTTACTCCGTTGTTCGCGCCCAGCAGGTTGCAATGGCTAGCGAATCGGAGCCGGTGAAAGATGAGCTGAAAATTAAGGAGTGGGAGGTGGGGATGTTCCACAACGAAGTGGCTGCGGCGCAGGGTATCAAGATCAGGAGGAGGCCGCCGACTGGGCCGCCTAAGCACTATGTTGGGCCTTTCGAGTTTCGACTGGAGAATGAGGGCAACACTCCCAGGAATATCTTGGAGGAGATCATATGGCACAAGGACCAAGAAGTCGCCAGGTGGAGAGAGAAGAAGCCTCTGCATAGGTTGTTGAAAGACCTTGAGAAGGCTCCTCCTGTTAGGGATTTCGTTGGAGCGCTCAGGGCGGCCCATGAAAGAACTGGAGTGCCGGGTTTGATAGCTGAAGTGAAGAAGGCTTCTCCGAGTAGAGGAGTTTTGAGGGAAGATTTTGATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAGAAGTATTTTCAGGGAAGTTATGAAAATATGGTAGCTATAAGAAATGCTGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATTGTTGACGCTTGGCAAATCTACTATGCTCGAGCTAAAGGGGCAGATGCTATTCTTTTGATTGCTGCTGTTTTGCCGGACCTTGATATCGGTTACATGACTAAGATATGCAAGAAGCTTAAGATGGCTACCCTTGTTGAGGTGCATGATGAGAAAGAAATGGACCGAGTTCTTGGAATCGAGGGGATTGAGTTAATTGGCATTAACAACCGCAATCTTGAAACATTTGAGGTTGATACTAGTAACACAAAGAAGCTTCTTGAAGGAAAGCATGGTGAAGTGATCCGTGAGAGAGGAATAATTGTGGTAGGAGAATCCGGGCTGTTTACTCCTGATGACATTGCCTATGTGCAAGAAGCTGGTGTTAAAGCGGTTTTGGTTGGAGAGTCCATTGTGAAACAGAGTGACCCAAAGAAAGGAATAGCTCAACTTTTTGGTAGAGATATTTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

380

Amino Acids

41.94

Weight (kDa)

6.24

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	108 - 372	1.1e-75	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	57
AccII	CGCG	1 cut(s)	114
AciI	CCGC	7 cut(s)	55, 212, 242, 254, 449, 895, 1055
AclWI	GGATC	2 cut(s)	530, 961
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	507
AfeI	AGCGCT	1 cut(s)	441
AfiI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
AflII	CTTAAG	1 cut(s)	803
AgsI	TTSAA	4 cut(s)	397, 545, 905, 947
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	2 cut(s)	311, 359
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	530, 961
Ama87I	CYCGRG	1 cut(s)	714
Aor51HI	AGCGCT	1 cut(s)	441
AoxI	GGCC	4 cut(s)	239, 251, 272, 450
ApeKI	GCWGC	3 cut(s)	209, 575, 749
ApoI	RAATTY	1 cut(s)	680
AspLEI	GCGC	4 cut(s)	71, 116, 217, 442
AspS9I	GGNCC	7 cut(s)	24, 251, 272, 346, 451, 763, 847
AsuC2I	CCSGG	2 cut(s)	474, 1003
AsuHPI	GGTGA	2 cut(s)	163, 971
AsuNHI	GCTAGC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	714
AvaII	GGWCC	4 cut(s)	24, 346, 763, 847
BbvI	GCAGC	3 cut(s)	196, 562, 736
BccI	CCATC	3 cut(s)	26, 68, 802
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	313, 361
BcnI	CCSGG	2 cut(s)	474, 1003
BcoDI	GTCTC	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	2 cut(s)	135, 924
BfoI	RGCGCY	2 cut(s)	72, 443
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	7 cut(s)	210, 213, 242, 254, 450, 576, 750
BlsI	GCNGC	7 cut(s)	211, 214, 243, 255, 451, 577, 751
Bme1390I	CCNGG	4 cut(s)	313, 361, 474, 1003
Bme18I	GGWCC	4 cut(s)	24, 346, 763, 847
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	7 cut(s)	24, 251, 272, 346, 451, 763, 847
BmiI	GGNNCC	2 cut(s)	147, 414
BmrFI	CCNGG	4 cut(s)	313, 361, 474, 1003
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	721
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	3 cut(s)	311, 486, 672
Bpu10I	CCTNAGC	2 cut(s)	258, 443
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	474, 1003
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	3 cut(s)	253, 294, 469
Bse3DI	GCAATG	2 cut(s)	135, 1023
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	313, 361
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
BseMI	GCAATG	2 cut(s)	135, 1023
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	3 cut(s)	253, 294, 469
BseRI	GAGGAG	4 cut(s)	250, 341, 405, 528
BseXI	GCAGC	3 cut(s)	196, 562, 736
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	241, 253, 274, 452
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	6 cut(s)	66, 149, 473, 539, 761, 1002
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	4 cut(s)	241, 253, 274, 452
BsoBI	CYCGRG	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	228, 330, 535, 966
BspACI	CCGC	7 cut(s)	55, 212, 242, 254, 449, 895, 1055
BspANI	GGCC	4 cut(s)	241, 253, 274, 452
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	147, 414
BspMI	ACCTGC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	530, 961
BspTI	CTTAAG	1 cut(s)	803
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	135, 1023
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	3 cut(s)	253, 294, 469
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	4 cut(s)	228, 330, 535, 966
Bst2UI	CCWGG	2 cut(s)	313, 361
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	4 cut(s)	258, 443, 584, 786
BstENI	CCTNNNNNAGG	2 cut(s)	407, 821
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	2 cut(s)	72, 443
BstHHI	GCGC	4 cut(s)	71, 116, 217, 442
BstKTI	GATC	4 cut(s)	231, 333, 538, 969
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	4 cut(s)	228, 330, 535, 966
BstMWI	GCNNNNNNNGC	4 cut(s)	250, 259, 446, 725
BstNI	CCWGG	2 cut(s)	313, 361
BstSCI	CCNGG	4 cut(s)	311, 359, 472, 1001
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	196, 562, 736
BsuRI	GGCC	4 cut(s)	241, 253, 274, 452
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	4 cut(s)	71, 116, 217, 442
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	7 cut(s)	24, 251, 272, 346, 451, 763, 847
CseI	GACGC	1 cut(s)	701
CviAII	CATG	4 cut(s)	455, 781, 830, 956
DdeI	CTNAG	4 cut(s)	258, 443, 584, 786
DpnI	GATC	4 cut(s)	230, 332, 537, 968
DpnII	GATC	4 cut(s)	228, 330, 535, 966
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	4 cut(s)	24, 346, 763, 847
Eco47III	AGCGCT	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	714
EcoNI	CCTNNNNNAGG	2 cut(s)	407, 821
EcoRII	CCWGG	2 cut(s)	311, 359
EcoRV	GATATC	1 cut(s)	772
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	458, 784, 833, 959
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	4 cut(s)	454, 780, 829, 955
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	7 cut(s)	210, 213, 242, 254, 450, 576, 750
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	7 cut(s)	210, 213, 242, 254, 450, 576, 750
FspBI	CTAG	2 cut(s)	135, 924
GlaI	GCGC	4 cut(s)	70, 115, 216, 441
GluI	GCNGC	7 cut(s)	210, 213, 242, 254, 450, 576, 750
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	3 cut(s)	311, 486, 672
HaeII	RGCGCY	2 cut(s)	72, 443
HaeIII	GGCC	4 cut(s)	241, 253, 274, 452
HapII	CCGG	6 cut(s)	66, 149, 473, 539, 761, 1002
HgaI	GACGC	1 cut(s)	701
HhaI	GCGC	4 cut(s)	71, 116, 217, 442
Hin1II	CATG	4 cut(s)	458, 784, 833, 959
Hin6I	GCGC	4 cut(s)	69, 114, 215, 440
HinP1I	GCGC	4 cut(s)	69, 114, 215, 440
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	3 cut(s)	555, 800, 938
HinfI	GANTC	4 cut(s)	140, 861, 998, 1070
HpaII	CCGG	6 cut(s)	66, 149, 473, 539, 761, 1002
HphI	GGTGA	2 cut(s)	163, 971
Hpy166II	GTNNAC	2 cut(s)	691, 1011
Hpy188I	TCNGA	2 cut(s)	145, 507
Hpy188III	TCNNGA	5 cut(s)	226, 232, 902, 944, 1016
Hpy8I	GTNNAC	2 cut(s)	691, 1011
HpyAV	CCTTC	6 cut(s)	42, 46, 105, 403, 490, 941
HpyCH4V	TGCA	7 cut(s)	45, 128, 385, 675, 795, 829, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	250, 259, 446, 725
HpyF3I	CTNAG	4 cut(s)	258, 443, 584, 786
Hsp92II	CATG	4 cut(s)	458, 784, 833, 959
HspAI	GCGC	4 cut(s)	69, 114, 215, 440
Kzo9I	GATC	4 cut(s)	228, 330, 535, 966
LmnI	GCTCC	5 cut(s)	62, 145, 418, 437, 572
Lsp1109I	GCAGC	3 cut(s)	196, 562, 736
LweI	GCATC	1 cut(s)	721
MaeI	CTAG	2 cut(s)	135, 924
MaeIII	GTNAC	3 cut(s)	776, 926, 1088
MalI	GATC	4 cut(s)	230, 332, 537, 968
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	4 cut(s)	228, 330, 535, 966
MboII	GAAGA	4 cut(s)	83, 385, 505, 539
MluCI	AATT	5 cut(s)	168, 546, 680, 879, 984
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	2 cut(s)	415, 1045
MseI	TTAA	5 cut(s)	171, 804, 878, 888, 1050
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	6 cut(s)	66, 149, 473, 539, 761, 1002
MspR9I	CCNGG	4 cut(s)	313, 361, 474, 1003
MvaI	CCWGG	2 cut(s)	313, 361
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	250, 259, 446, 725
NciI	CCSGG	2 cut(s)	474, 1003
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	4 cut(s)	228, 330, 535, 966
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	4 cut(s)	458, 784, 833, 959
NlaIV	GGNNCC	2 cut(s)	147, 414
NmuCI	GTSAC	1 cut(s)	1088
PaeR7I	CTCGAG	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	140, 861, 998
PkrI	GCNGC	7 cut(s)	211, 214, 243, 255, 451, 577, 751
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
Psp6I	CCWGG	2 cut(s)	311, 359
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	311, 359
PspN4I	GGNNCC	2 cut(s)	147, 414
PspPI	GGNCC	7 cut(s)	24, 251, 272, 346, 451, 763, 847
PspXI	VCTCGAGB	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	171, 804, 878, 888, 1050
SatI	GCNGC	7 cut(s)	210, 213, 242, 254, 450, 576, 750
Sau3AI	GATC	4 cut(s)	228, 330, 535, 966
Sau96I	GGNCC	7 cut(s)	24, 251, 272, 346, 451, 763, 847
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	4 cut(s)	313, 361, 474, 1003
SfaNI	GCATC	1 cut(s)	721
Sfr274I	CTCGAG	1 cut(s)	714
SinI	GGWCC	4 cut(s)	24, 346, 763, 847
SlaI	CTCGAG	1 cut(s)	714
SmlI	CTYRAG	3 cut(s)	404, 714, 803
SmoI	CTYRAG	3 cut(s)	404, 714, 803
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	5 cut(s)	168, 546, 680, 879, 984
SsiI	CCGC	7 cut(s)	55, 212, 242, 254, 449, 895, 1055
SspMI	CTAG	2 cut(s)	135, 924
StyD4I	CCNGG	4 cut(s)	311, 359, 472, 1001
TaqI	TCGA	4 cut(s)	279, 286, 715, 864
TaqII	GACCGA	1 cut(s)	864
TasI	AATT	5 cut(s)	168, 546, 680, 879, 984
TauI	GCSGC	4 cut(s)	215, 244, 256, 452
TfiI	GAWTC	3 cut(s)	140, 861, 998
Tru1I	TTAA	5 cut(s)	171, 804, 878, 888, 1050
Tru9I	TTAA	5 cut(s)	171, 804, 878, 888, 1050
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	1 cut(s)	1088
TseI	GCWGC	3 cut(s)	209, 575, 749
Tsp45I	GTSAC	1 cut(s)	1088
TspDTI	ATGAA	3 cut(s)	471, 576, 639
TspGWI	ACGGA	3 cut(s)	16, 94, 959
TspRI	CASTG	1 cut(s)	665
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	4 cut(s)	24, 346, 763, 847
XagI	CCTNNNNNAGG	2 cut(s)	407, 821
XapI	RAATTY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	319, 461
XhoI	CTCGAG	1 cut(s)	714
XspI	CTAG	2 cut(s)	135, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.