Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Reverse (-)

8272870 .. 8273295

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGGGTTTAGCTTCCATCAGGGCTGTCCCTTTTTTCACTTGCAGACCCAAACGCTCCATCTCCGGCACCAGACCTAGCTCGCTCTCTCTTCCTTCCTCTACCATTGTTCGAGCTCAACAGGTTGCAATGGCTAGCGAATTGGAGCCGATAAAAGACGAGCTGAAAATCAAAGTGGGGGAGGTGGGTTTGTTGCACAACGAAGTTGCCGCGGCGCAGGGCATCAAAATCAGGAGGAGGCCACCGACAGGGTCACCTAAGCACTATGTTGGGCCTTTCGAGTTTCGATTAGAGAATGAGGGCAATACTCCGAGGAATATCTTGGAGGAGATCATATGGCACAAGGACATAGAAGTCGCCAGGTGGAGAGAGAAAAAGCCTCTGCATTCGTTATTGAAAGACTTGCAGAAGGCTCCCCCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

9.74

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 212
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	14, 81, 116, 163
AluI	AGCT	4 cut(s)	14, 81, 116, 163
Alw21I	GWGCWC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	239, 272
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	2 cut(s)	26, 68
BciT130I	CCWGG	1 cut(s)	361
BfaI	CTAG	2 cut(s)	78, 135
BisI	GCNGC	2 cut(s)	210, 213
BlsI	GCNGC	2 cut(s)	211, 214
Bme1390I	CCNGG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	70, 147, 414
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	231
BmtI	GCTAGC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	210, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	210, 311
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	250, 341
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	241, 274
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	241, 274
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	210, 212
BspANI	GGCC	2 cut(s)	241, 274
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	70, 147, 414
BspOI	GCTAGC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	210, 311
BssMI	GATC	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	83, 136
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	361
BstPI	GGTNACC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	359
BstUI	CGCG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	241, 274
BtgI	CCRYGG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	83, 136
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	272
Cfr42I	CCGCGG	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	118
FaiI	YATR	4 cut(s)	267, 335, 337, 350
FaqI	GGGAC	1 cut(s)	14
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	210, 213
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	2 cut(s)	210, 213
FspBI	CTAG	2 cut(s)	78, 135
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	210, 213
HaeIII	GGCC	2 cut(s)	241, 274
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	105, 403
HpyCH4V	TGCA	5 cut(s)	45, 128, 196, 385, 406
HpyF3I	CTNAG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	215
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	62, 145, 418
LpnPI	CCDG	9 cut(s)	7, 79, 85, 107, 203, 217, 234, 346, 373
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	78, 135
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	8 cut(s)	109, 175, 228, 231, 292, 306, 319, 390
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	212
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	1 cut(s)	330
NheI	GCTAGC	1 cut(s)	134
NlaIV	GGNNCC	3 cut(s)	70, 147, 414
NmuCI	GTSAC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	211, 214
Psp124BI	GAGCTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	70, 147, 414
PspPI	GGNCC	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	213
SatI	GCNGC	2 cut(s)	210, 213
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	9 cut(s)	16, 79, 83, 118, 126, 165, 186, 259, 365
SfaNI	GCATC	1 cut(s)	231
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	210, 212
SspMI	CTAG	2 cut(s)	78, 135
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	359
TaqI	TCGA	3 cut(s)	112, 279, 286
TasI	AATT	1 cut(s)	140
TauI	GCSGC	2 cut(s)	212, 215
TseFI	GTSAC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	78, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.