Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Reverse (-)

7560481 .. 7561846

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG086800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGGTTTAGCTTCCATCAGGGCTGTCCCTTTTTTCACTTGCAGACCCAAACGCTTCATCTCCGGCACCAGACCAAGCTCGCTCTCTCTTCCTTCCTCTACCATTGTTCGAGCTCAACAGGTTGCAATGGCTAGCGATTTGGAACCGATAAAAGACGAGCTGAAAATCAAAGTGGGGGAGGTGGGTTTGTTCCACAACGAAGTTGCCGCGGCACAGGGCATCAAAATCAGGAGGAGGCCACCGACAGGGTCACCTAAGCACTATGTTGGGCCTTTCGAGTTTCGATTAGAGAATGAGGGCAATACTCCGAGGAATATCTTGGAGGAGATCATATGGCACAAGGACATAGAAGTCGCCAGATGGAGAGAGAAAAAGCCTCCTCTGCATTCGTTATTGAAAGACTTGCAGAAGGCTCCCCCTGTTAGAGATTTTGTTGGAGCTCTCAGAGCGGTCAATGAAAGAACCGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAGGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTCAATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTAAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATAAAAATATGGCAGCAGTAAGAAATGCAGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATCATTGATGCTTGGCAAATCTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGATTGCTGCTGTTTTGCCCGACCTCGATATTAGTTACATGATTAAGATATGCAAGAGGCTTAAAATGGCAACCCTTGTTGAGGTGCATGATGAGAAGGAAATGGACCGTGTTCTTAGAATCGAGGGGGTTGATTTTATTGGCATCAACAACCGCAATCTTGAAACATTTGAAGTTGATACTAGTAACACAAAGAAGATGCTTGAAGGAAAGCGTGGCGAAATTATCCGTGAAAGAGACATAATTGTGGTAGGAGAATCTGGGCTGTTTACTCCTGATGACATTGCATACGTGCAAGAAGCTGGTGTTAAAGCGGTTTTGGTTGGAGAGTCAATTGTGAAACAGAGTGACCTGAAAAAAGGAATAGCTCAACTTTTTGGTAGAGACATTTCCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

381

Amino Acids

42.4

Weight (kDa)

8.64

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	108 - 373	2.1e-75	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	452
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	210, 212, 452, 898, 1058
AclWI	GGATC	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	248, 515, 826
AgsI	TTSAA	6 cut(s)	400, 538, 548, 908, 917, 950
AhlI	ACTAGT	1 cut(s)	926
AjnI	CCWGG	1 cut(s)	475
Alw21I	GWGCWC	2 cut(s)	118, 445
Alw26I	GTCTC	2 cut(s)	975, 1122
AlwI	GGATC	1 cut(s)	714
AoxI	GGCC	2 cut(s)	239, 272
ApeKI	GCWGC	3 cut(s)	578, 638, 752
ApoI	RAATTY	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	272, 850
AsuHPI	GGTGA	1 cut(s)	246
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	118, 445
Bbv12I	GWGCWC	2 cut(s)	118, 445
BbvI	GCAGC	3 cut(s)	565, 650, 739
BccI	CCATC	2 cut(s)	26, 357
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	2 cut(s)	975, 1122
BcuI	ACTAGT	1 cut(s)	926
BfaI	CTAG	2 cut(s)	135, 927
BisI	GCNGC	5 cut(s)	210, 213, 579, 639, 753
BlsI	GCNGC	5 cut(s)	211, 214, 580, 640, 754
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	850
BmgT120I	GGNCC	2 cut(s)	272, 850
BmiI	GGNNCC	3 cut(s)	70, 147, 417
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	5 cut(s)	231, 685, 724, 897, 933
BmtI	GCTAGC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	1036
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	210, 311, 476
BsaWI	WCCGGW	2 cut(s)	467, 541
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 515, 826
Bse3DI	GCAATG	2 cut(s)	135, 1026
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	210, 311, 476
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	248, 515, 826
BseMI	GCAATG	2 cut(s)	135, 1026
BseMII	CTCAG	1 cut(s)	460
BseRI	GAGGAG	4 cut(s)	250, 341, 372, 531
BseXI	GCAGC	3 cut(s)	565, 650, 739
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	241, 274
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	118, 445
BsiSI	CCGG	3 cut(s)	66, 468, 542
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	248, 515, 826
BsmAI	GTCTC	2 cut(s)	975, 1122
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	241, 274
Bsp1286I	GDGCHC	2 cut(s)	118, 445
Bsp143I	GATC	2 cut(s)	330, 719
BspACI	CCGC	5 cut(s)	210, 212, 452, 898, 1058
BspANI	GGCC	2 cut(s)	241, 274
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	70, 147, 417
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	135, 1026
BssECI	CCNNGG	3 cut(s)	210, 311, 476
BssMI	GATC	2 cut(s)	330, 719
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	854
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	1036
BstC8I	GCNNGC	2 cut(s)	83, 136
BstDEI	CTNAG	4 cut(s)	258, 446, 587, 860
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	824
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	333, 722
BstMAI	GTCTC	2 cut(s)	975, 1122
BstMBI	GATC	2 cut(s)	330, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 449
BstNI	CCWGG	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	565, 650, 739
BsuRI	GGCC	2 cut(s)	241, 274
BtgI	CCRYGG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	668
Cac8I	GCNNGC	2 cut(s)	83, 136
Cfr13I	GGNCC	2 cut(s)	272, 850
Cfr42I	CCGCGG	1 cut(s)	213
CviAII	CATG	2 cut(s)	784, 833
DdeI	CTNAG	4 cut(s)	258, 446, 587, 860
DpnI	GATC	2 cut(s)	332, 721
DpnII	GATC	2 cut(s)	330, 719
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	116, 443
Eco24I	GRGCYC	2 cut(s)	118, 445
Eco47I	GGWCC	1 cut(s)	850
Eco53kI	GAGCTC	2 cut(s)	116, 443
Eco57I	CTGAAG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	116, 443
EcoNI	CCTNNNNNAGG	1 cut(s)	824
EcoO65I	GGTNACC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	2 cut(s)	118, 445
FaeI	CATG	2 cut(s)	787, 836
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	2 cut(s)	783, 832
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	5 cut(s)	210, 213, 579, 639, 753
FriOI	GRGCYC	2 cut(s)	118, 445
Fsp4HI	GCNGC	5 cut(s)	210, 213, 579, 639, 753
FspBI	CTAG	2 cut(s)	135, 927
GluI	GCNGC	5 cut(s)	210, 213, 579, 639, 753
HaeIII	GGCC	2 cut(s)	241, 274
HapII	CCGG	3 cut(s)	66, 468, 542
Hin1II	CATG	2 cut(s)	787, 836
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	3 cut(s)	864, 1001, 1073
HpaII	CCGG	3 cut(s)	66, 468, 542
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	1014
Hpy188I	TCNGA	4 cut(s)	312, 449, 510, 1145
Hpy188III	TCNNGA	3 cut(s)	232, 905, 1019
Hpy8I	GTNNAC	1 cut(s)	1014
HpyAV	CCTTC	5 cut(s)	105, 406, 493, 835, 944
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4IV	ACGT	1 cut(s)	1035
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 449
HpyF3I	CTNAG	4 cut(s)	258, 446, 587, 860
HpySE526I	ACGT	1 cut(s)	1035
Hsp92II	CATG	2 cut(s)	787, 836
KspI	CCGCGG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	330, 719
LmnI	GCTCC	3 cut(s)	421, 440, 575
Lsp1109I	GCAGC	3 cut(s)	565, 650, 739
LweI	GCATC	5 cut(s)	231, 685, 724, 897, 933
MaeI	CTAG	2 cut(s)	135, 927
MaeII	ACGT	1 cut(s)	1035
MaeIII	GTNAC	4 cut(s)	252, 779, 929, 1091
MalI	GATC	2 cut(s)	332, 721
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	2 cut(s)	330, 719
MboII	GAAGA	3 cut(s)	83, 508, 952
MfeI	CAATTG	1 cut(s)	1077
MhlI	GDGCHC	2 cut(s)	118, 445
MluCI	AATT	5 cut(s)	549, 683, 966, 987, 1077
MlyI	GAGTC	1 cut(s)	1082
MmeI	TCCRAC	2 cut(s)	418, 1048
MseI	TTAA	3 cut(s)	789, 807, 1053
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	66, 468, 542
MspR9I	CCNGG	1 cut(s)	477
MunI	CAATTG	1 cut(s)	1077
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	385, 449
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	2 cut(s)	330, 719
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	787, 836
NlaIV	GGNNCC	3 cut(s)	70, 147, 417
NmuCI	GTSAC	2 cut(s)	252, 1091
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	864, 1001
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	211, 214, 580, 640, 754
PleI	GAGTC	1 cut(s)	1081
PpsI	GAGTC	1 cut(s)	1081
Ppu21I	YACGTR	1 cut(s)	1036
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	2 cut(s)	118, 445
Psp6I	CCWGG	1 cut(s)	475
PspEI	GGTNACC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	70, 147, 417
PspPI	GGNCC	2 cut(s)	272, 850
PsyI	GACNNNGTC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	989
SacI	GAGCTC	2 cut(s)	118, 445
SacII	CCGCGG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	789, 807, 1053
SatI	GCNGC	5 cut(s)	210, 213, 579, 639, 753
Sau3AI	GATC	2 cut(s)	330, 719
Sau96I	GGNCC	2 cut(s)	272, 850
SchI	GAGTC	1 cut(s)	1082
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	2 cut(s)	118, 445
SfaNI	GCATC	5 cut(s)	231, 685, 724, 897, 933
Sfr303I	CCGCGG	1 cut(s)	213
SgrBI	CCGCGG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	850
SmiMI	CAYNNNNRTG	1 cut(s)	989
SpeI	ACTAGT	1 cut(s)	926
Sse9I	AATT	5 cut(s)	549, 683, 966, 987, 1077
SsiI	CCGC	5 cut(s)	210, 212, 452, 898, 1058
SspMI	CTAG	2 cut(s)	135, 927
SstI	GAGCTC	2 cut(s)	118, 445
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	1 cut(s)	854
TaiI	ACGT	1 cut(s)	1038
TaqI	TCGA	6 cut(s)	112, 279, 286, 718, 771, 867
TasI	AATT	5 cut(s)	549, 683, 966, 987, 1077
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	2 cut(s)	864, 1001
Tru1I	TTAA	3 cut(s)	789, 807, 1053
Tru9I	TTAA	3 cut(s)	789, 807, 1053
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	2 cut(s)	252, 1091
TseI	GCWGC	3 cut(s)	578, 638, 752
Tsp45I	GTSAC	2 cut(s)	252, 1091
TspDTI	ATGAA	4 cut(s)	49, 474, 579, 618
TspGWI	ACGGA	1 cut(s)	962
TspRI	CASTG	1 cut(s)	668
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	850
XagI	CCTNNNNNAGG	1 cut(s)	824
XapI	RAATTY	1 cut(s)	683
XspI	CTAG	2 cut(s)	135, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.