Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Reverse (-)

9981805 .. 9985339

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1129300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAGGCCTTGGCTTCCTTCCGGGCTGTTGCTTCTCTCTCTTCCCGCGCCAGAAACCCCATTTCCGCCTCCGCTTTCGACGCTCGTAGAGCAAAGTGGCTCTCTCTTCCTTCGTCGTCTTCCTCCATTGTTCGAGCTCAGCAGTCTAAGGGCACTCCGCCGTCGGCGGTTGCGGTGGAAGGTGAACAGGAGCCGGAGAAAGTTGAGCTGAAAATCAAGGAATGGGAGGTGGGTATGTACCACAATGAGGTGGCTGCGAGTCAGGGAATTAGAATCAGGAGGAGGCCTCCCACAGGACCCCCTCAGCACTATGTGGGACCTTTCGAGTTCCGGTTGCAGAACGAGGGCAACACTCCACGGAATATTCTGGAGGAAATCATATGGCACAAGGACACTCAAGTTGCTCAGTTGAAGCAGAGGCAACCTCTGTATTCATTGAAGAAAGATCTTGACAATGCTCCGCCGGTGAGGGATTTTGTTGGAGCTCTGAGGGCAGCGCATTCACGAACTGGTCTGCCCGGTTTGATTGCTGAAGTGAAGAAGGCTTCCCCAAGTAGAGGAGTTTTGAGGGAAAATTTTGATCCTGTTGAAATTGCACAAGCTTATGAAAAAGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGCTATGAAAATATGGTGGCGATAAGAAATGCTGGAGTGAAGTGCCCTCTGTTGTGCAAAGAATTTATCATCGAGGCTTGGCAAATCTACTATGCTCGAACCAAAGGTGCAGATGCGATTCTTTTGATTGCTGCTGTTTTGCCTGACCTTGACATCAAATACATGACAAAGATCTGCAAGATGCTTGGCATGGCAACACTTGTTGAGGTGCATGATGAGAGGGAAATGGACCGTGTTCTTGGCATTGAGGGGGTTGAGTTAATTGGCATCAACAACCGCAATCTTGAAACATTTGAGGTTGATACTGGTAACACAAAGAAGCTTCTTGAAGGAGAGCGTGGCGAATTAATCCGTCAGAGAGACATCATTGTGGTAGGAGAATCTGGACTGTTTACACCGGATGACATTGCCTATGTACAAGAAGCTGGTGTTAAAGCGGTTTTGGTAGGAGAGTCAATTGTGAAACAGGATGACCCTCAGAAGGGAATAGCTGAACTTTTTGGTAAAGACATTTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

395

Amino Acids

43.53

Weight (kDa)

6.09

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	123 - 387	4.8e-78	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1183
AccII	CGCG	1 cut(s)	48
AciI	CCGC	9 cut(s)	46, 66, 72, 158, 167, 173, 461, 940, 1100
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	574, 725
AcuI	CTGAAG	1 cut(s)	552
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	239, 1080
AfiI	CCNNNNNNNGG	5 cut(s)	247, 293, 557, 1144, 1145
AgsI	TTSAA	5 cut(s)	412, 439, 590, 950, 992
AluBI	AGCT	9 cut(s)	137, 208, 485, 602, 620, 666, 985, 1088, 1154
AluI	AGCT	9 cut(s)	137, 208, 485, 602, 620, 666, 985, 1088, 1154
Alw21I	GWGCWC	2 cut(s)	139, 487
Alw26I	GTCTC	1 cut(s)	1017
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	2 cut(s)	6, 284
ApeKI	GCWGC	4 cut(s)	254, 494, 620, 794
ApoI	RAATTY	2 cut(s)	574, 725
AseI	ATTAAT	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	50, 499
AspS9I	GGNCC	3 cut(s)	296, 317, 892
AsuC2I	CCSGG	2 cut(s)	23, 519
AsuHPI	GGTGA	2 cut(s)	194, 478
AvaII	GGWCC	3 cut(s)	296, 317, 892
BaeGI	GKGCMC	2 cut(s)	155, 710
BanII	GRGCYC	2 cut(s)	139, 487
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	139, 487
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	4 cut(s)	241, 506, 607, 781
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	2 cut(s)	23, 519
BcoDI	GTCTC	1 cut(s)	1017
BglII	AGATCT	2 cut(s)	445, 834
BisI	GCNGC	4 cut(s)	255, 495, 621, 795
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	256, 496, 622, 796
Bme1390I	CCNGG	2 cut(s)	23, 519
Bme18I	GGWCC	3 cut(s)	296, 317, 892
BmgT120I	GGNCC	3 cut(s)	296, 317, 892
BmiI	GGNNCC	3 cut(s)	192, 298, 318
BmrFI	CCNGG	2 cut(s)	23, 519
BmsI	GCATC	3 cut(s)	766, 834, 939
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	4 cut(s)	271, 303, 409, 441
BpmI	CTGGAG	2 cut(s)	389, 717
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	23, 519
BsaJI	CCNNGG	2 cut(s)	9, 356
BsaWI	WCCGGW	2 cut(s)	330, 1060
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 293, 557, 1144, 1145
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	2 cut(s)	514, 973
Bse3DI	GCAATG	1 cut(s)	1068
BseDI	CCNNGG	2 cut(s)	9, 356
BseGI	GGATG	2 cut(s)	1069, 1138
BseLI	CCNNNNNNNGG	5 cut(s)	247, 293, 557, 1144, 1145
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	5 cut(s)	152, 317, 419, 479, 1154
BseNI	ACTGG	2 cut(s)	514, 973
BseRI	GAGGAG	2 cut(s)	295, 573
BseSI	GKGCMC	2 cut(s)	155, 710
BseXI	GCAGC	4 cut(s)	241, 506, 607, 781
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	8, 286
BsiHKAI	GWGCWC	2 cut(s)	139, 487
BsiSI	CCGG	6 cut(s)	22, 194, 331, 464, 519, 1061
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	5 cut(s)	247, 293, 557, 1144, 1145
BsmAI	GTCTC	1 cut(s)	1017
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	8, 286
Bsp1286I	GDGCHC	4 cut(s)	139, 155, 487, 710
Bsp1407I	TGTACA	1 cut(s)	1078
Bsp143I	GATC	3 cut(s)	445, 580, 834
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	9 cut(s)	46, 66, 72, 158, 167, 173, 461, 940, 1100
BspANI	GGCC	2 cut(s)	8, 286
BspCNI	CTCAG	5 cut(s)	151, 316, 418, 480, 1153
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	3 cut(s)	192, 298, 318
BspPI	GGATC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	1068
BsrFI	RCCGGY	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	1078
BsrI	ACTGG	2 cut(s)	514, 973
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	9, 356
BssMI	GATC	3 cut(s)	445, 580, 834
BssT1I	CCWWGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	896, 1053
Bst6I	CTCTTC	2 cut(s)	46, 111
BstAUI	TGTACA	1 cut(s)	1078
BstDEI	CTNAG	7 cut(s)	138, 147, 303, 405, 488, 629, 1140
BstDSI	CCRYGG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	1069, 1138
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	2 cut(s)	50, 499
BstKTI	GATC	3 cut(s)	448, 583, 837
BstMAI	GTCTC	1 cut(s)	1017
BstMBI	GATC	3 cut(s)	445, 580, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 491
BstSCI	CCNGG	2 cut(s)	21, 517
BstSLI	GKGCMC	2 cut(s)	155, 710
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	241, 506, 607, 781
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	445, 834
BstYI	RGATCY	2 cut(s)	445, 834
BsuRI	GGCC	2 cut(s)	8, 286
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	1069, 1138
CfoI	GCGC	2 cut(s)	50, 499
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	3 cut(s)	296, 317, 892
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	238, 1079
CviAII	CATG	3 cut(s)	826, 853, 875
CviQI	GTAC	2 cut(s)	238, 1079
DdeI	CTNAG	7 cut(s)	138, 147, 303, 405, 488, 629, 1140
DpnI	GATC	3 cut(s)	447, 582, 836
DpnII	GATC	3 cut(s)	445, 580, 834
DraIII	CACNNNGTG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	46, 111
EarI	CTCTTC	2 cut(s)	46, 111
EciI	GGCGGA	3 cut(s)	55, 147, 450
Ecl136II	GAGCTC	2 cut(s)	137, 485
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	2 cut(s)	8, 286
Eco24I	GRGCYC	2 cut(s)	139, 487
Eco47I	GGWCC	3 cut(s)	296, 317, 892
Eco53kI	GAGCTC	2 cut(s)	137, 485
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	2 cut(s)	137, 485
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	296, 317
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	139, 487
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	829, 856, 878
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	3 cut(s)	825, 852, 874
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	255, 495, 621, 795
FokI	GGATG	2 cut(s)	1076, 1145
FriOI	GRGCYC	2 cut(s)	139, 487
Fsp4HI	GCNGC	4 cut(s)	255, 495, 621, 795
GlaI	GCGC	2 cut(s)	49, 498
GluI	GCNGC	4 cut(s)	255, 495, 621, 795
GsuI	CTGGAG	2 cut(s)	389, 717
HaeIII	GGCC	2 cut(s)	8, 286
HapII	CCGG	6 cut(s)	22, 194, 331, 464, 519, 1061
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	50, 499
Hin1II	CATG	3 cut(s)	829, 856, 878
Hin6I	GCGC	2 cut(s)	48, 497
HinP1I	GCGC	2 cut(s)	48, 497
HindIII	AAGCTT	2 cut(s)	600, 983
HinfI	GANTC	5 cut(s)	259, 273, 781, 1043, 1115
HpaII	CCGG	6 cut(s)	22, 194, 331, 464, 519, 1061
HphI	GGTGA	2 cut(s)	194, 478
Hpy166II	GTNNAC	2 cut(s)	185, 1056
Hpy188I	TCNGA	3 cut(s)	489, 1020, 1143
Hpy188III	TCNNGA	7 cut(s)	277, 368, 449, 504, 947, 989, 1047
Hpy8I	GTNNAC	2 cut(s)	185, 1056
Hpy99I	CGWCG	3 cut(s)	83, 118, 166
HpyAV	CCTTC	6 cut(s)	28, 120, 173, 535, 986, 1138
HpyCH4III	ACNGT	2 cut(s)	896, 1053
HpyCH4V	TGCA	6 cut(s)	337, 596, 720, 773, 840, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 491
HpyF3I	CTNAG	7 cut(s)	138, 147, 303, 405, 488, 629, 1140
Hsp92II	CATG	3 cut(s)	829, 856, 878
HspAI	GCGC	2 cut(s)	48, 497
Kzo9I	GATC	3 cut(s)	445, 580, 834
LmnI	GCTCC	4 cut(s)	190, 463, 482, 617
Lsp1109I	GCAGC	4 cut(s)	241, 506, 607, 781
LweI	GCATC	3 cut(s)	766, 834, 939
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	3 cut(s)	447, 582, 836
MboI	GATC	3 cut(s)	445, 580, 834
MboII	GAAGA	5 cut(s)	33, 98, 111, 451, 550
MfeI	CAATTG	1 cut(s)	1119
MflI	RGATCY	2 cut(s)	445, 834
MhlI	GDGCHC	4 cut(s)	139, 155, 487, 710
MluCI	AATT	7 cut(s)	267, 574, 591, 725, 924, 1007, 1119
MlyI	GAGTC	2 cut(s)	268, 1124
MmeI	TCCRAC	1 cut(s)	460
MseI	TTAA	3 cut(s)	923, 1010, 1095
MslI	CAYNNNNRTG	1 cut(s)	1031
MspI	CCGG	6 cut(s)	22, 194, 331, 464, 519, 1061
MspR9I	CCNGG	2 cut(s)	23, 519
MunI	CAATTG	1 cut(s)	1119
Mva1269I	GAATGC	1 cut(s)	499
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 491
NciI	CCSGG	2 cut(s)	23, 519
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	3 cut(s)	445, 580, 834
NlaIII	CATG	3 cut(s)	829, 856, 878
NlaIV	GGNNCC	3 cut(s)	192, 298, 318
PceI	AGGCCT	2 cut(s)	8, 286
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	273, 781, 1043
PkrI	GCNGC	4 cut(s)	256, 496, 622, 796
PleI	GAGTC	2 cut(s)	267, 1123
PpsI	GAGTC	2 cut(s)	267, 1123
PpuMI	RGGWCCY	2 cut(s)	296, 317
PshBI	ATTAAT	1 cut(s)	1010
PsiI	TTATAA	1 cut(s)	1183
Psp124BI	GAGCTC	2 cut(s)	139, 487
Psp5II	RGGWCCY	2 cut(s)	296, 317
PspN4I	GGNNCC	3 cut(s)	192, 298, 318
PspPI	GGNCC	3 cut(s)	296, 317, 892
PspPPI	RGGWCCY	2 cut(s)	296, 317
PsuI	RGATCY	2 cut(s)	445, 834
RsaI	GTAC	2 cut(s)	239, 1080
RsaNI	GTAC	2 cut(s)	238, 1079
RseI	CAYNNNNRTG	1 cut(s)	1031
SacI	GAGCTC	2 cut(s)	139, 487
SaqAI	TTAA	3 cut(s)	923, 1010, 1095
SatI	GCNGC	4 cut(s)	255, 495, 621, 795
Sau3AI	GATC	3 cut(s)	445, 580, 834
Sau96I	GGNCC	3 cut(s)	296, 317, 892
SchI	GAGTC	2 cut(s)	268, 1124
ScrFI	CCNGG	2 cut(s)	23, 519
SduI	GDGCHC	4 cut(s)	139, 155, 487, 710
SfaNI	GCATC	3 cut(s)	766, 834, 939
SgrAI	CRCCGGYG	1 cut(s)	463
SinI	GGWCC	3 cut(s)	296, 317, 892
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	7 cut(s)	267, 574, 591, 725, 924, 1007, 1119
SseBI	AGGCCT	2 cut(s)	8, 286
SsiI	CCGC	9 cut(s)	46, 66, 72, 158, 167, 173, 461, 940, 1100
SspI	AATATT	1 cut(s)	364
SstI	GAGCTC	2 cut(s)	139, 487
StuI	AGGCCT	2 cut(s)	8, 286
StyD4I	CCNGG	2 cut(s)	21, 517
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	896, 1053
TaqI	TCGA	5 cut(s)	78, 133, 324, 735, 760
TasI	AATT	7 cut(s)	267, 574, 591, 725, 924, 1007, 1119
TatI	WGTACW	1 cut(s)	1078
TfiI	GAWTC	3 cut(s)	273, 781, 1043
Tru1I	TTAA	3 cut(s)	923, 1010, 1095
Tru9I	TTAA	3 cut(s)	923, 1010, 1095
TseI	GCWGC	4 cut(s)	254, 494, 620, 794
TspDTI	ATGAA	4 cut(s)	423, 621, 660, 684
TspGWI	ACGGA	2 cut(s)	373, 1004
VpaK11BI	GGWCC	3 cut(s)	296, 317, 892
VspI	ATTAAT	1 cut(s)	1010
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	574, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.