Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008243

Physical Location & Seq

Genomic Coordinates Forward (+)

20703641 .. 20707133

Gene Structure 3493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G196200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAGGTTTGGCTTCGTTCCGGGCTGTCCCTTCTTTTACTTCCAGACCCAGAAGTTCCATACTCGGCACAGCTTTGAACCCGCGTAGAGGGAACTCGCTGTCTTTTTCATCTTCGTCTTCCTCCATTGTTCGAGCTCAACAGATGGAGTCTAAGGATGACGAACCTGAGCCTGAGAAAATTGAGCTGAAAATCAAGGAATGGGAGAATAGCATGTACCACAATGAAGTAGCTGCGAGCCAAGGCATCAGAATCAGAAGGAGACCACCAACTGGACCCCCTTTGCACTATGTTGGGCCCTTTGAGTTTCGCTTGCAGAATGAGGGCAATACTCCACGAAATATTTTGGAGGAAATCATTTGGCACAAAGACACTCAAGTTGCACAGTTAAAGGAGAGGCAACCTCTATATTCTTTGAAGAAAGCTCTTGATAATGCTCCTCCTGTTAGGGATTTTATTGGAGCTCTTAGAGCAGCAAATTCACGAACTGGACTGCCTGGTTTGATAGCTGAAGTGAAGAAGGCTTCTCCAAGTAGAGGAGTCCTGAGAGAAAATTTTGATCCGGTGGAAATTGCCCAAGCATATGAAAAAGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTTTTTTCAGGGAAGCTATGACAATATGCTGGCAATAAGAGATGCCGGAGTAAAGTGCCCTTTGTTGTGCAAAGAGTTTATCATTGAGGCTTGGCAAATCTACTATGCTCGATCCAAAGGTGCAGATGCGATTCTTTTGATTGCTGCTGTTTTGCCTGACCTTGACATCAAATACATGACAAAGATCTGCAAGATGCTTGGCATGGCCACACTTGTTGAGGTGCACGATGAGAGGGAAATGGACCGTGTTCTTGGCATTGAGGAGGTTGAGTTTATTGGCATCAACAACCGCAATCTGGAAACATTTGAGGTTGATATTGGTAACACAAAGAAGCTTCTTGAAGGAAAGCGGGGTGAAGAAATCCGTAAAAGAGACATAATTGTGGTAGGAGAATCCGGTCTATTCACTCCTGATGATATTGCCTATGTACAAGAAGCTGGAGTTAAAGCAGTTTTGGTAGGAGAGTCGATTGTGAAACAAAGTGACCCTGAGAAGGGAGTAGCTGGACTTTTTGGTAAAGACATATCTTTACAGTCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

391

Amino Acids

43.29

Weight (kDa)

5.84

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04400 AT5G48220 AT5G48220 AT5G48220 AT5G48220
fragaria_vesca	FvH4_6g40500 FvH4_6g40500
malus_domestica	MD09G1129300.v1.1 MD17G1118200.v1.1
prunus_persica	Prupe.3G196200_v2.0.a1 Prupe.3G196200_v2.0.a1
pyrus_communis	pycom09g05250 pycom17g10870
rosa_chinensis	RchiOBHm_Chr5g0011911
rosa_laevigata	RLG00000020861
rosa_multiflora	Rmu_sc0001475.1_g000007
rosa_rugosa	Rorug04G0459800 Rorug04G0459900
rosa_samantha	Rh5AG091300 Rh5BG086800 Rh5CG101000 Rh5DG087600
rosa_wichuraiana	Rw5G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccII	CGCG	1 cut(s)	85
AciI	CCGC	3 cut(s)	83, 919, 979
AclWI	GGATC	2 cut(s)	554, 735
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	2 cut(s)	478, 553
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	218, 1059
AfiI	CCNNNNNNNGG	6 cut(s)	89, 272, 536, 925, 1123, 1124
AgsI	TTSAA	3 cut(s)	79, 418, 971
AjnI	CCWGG	1 cut(s)	496
Alw21I	GWGCWC	3 cut(s)	139, 466, 855
Alw26I	GTCTC	2 cut(s)	256, 996
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	2 cut(s)	554, 735
AoxI	GGCC	2 cut(s)	296, 834
ApaI	GGGCCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	4 cut(s)	233, 473, 599, 773
ApoI	RAATTY	2 cut(s)	478, 553
AspS9I	GGNCC	4 cut(s)	275, 296, 297, 871
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	995
AvaII	GGWCC	2 cut(s)	275, 871
BaeGI	GKGCMC	3 cut(s)	300, 689, 855
BalI	TGGCCA	1 cut(s)	836
BanII	GRGCYC	3 cut(s)	139, 300, 466
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	3 cut(s)	139, 466, 855
BbvI	GCAGC	4 cut(s)	220, 485, 586, 760
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	256, 996
BglII	AGATCT	1 cut(s)	813
BisI	GCNGC	4 cut(s)	234, 474, 600, 774
BlsI	GCNGC	4 cut(s)	235, 475, 601, 775
Bme1390I	CCNGG	2 cut(s)	23, 498
Bme18I	GGWCC	2 cut(s)	275, 871
BmgT120I	GGNCC	4 cut(s)	275, 296, 297, 871
BmiI	GGNNCC	2 cut(s)	277, 298
BmrFI	CCNGG	2 cut(s)	23, 498
BmsI	GCATC	5 cut(s)	255, 661, 745, 813, 918
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	1089
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	2 cut(s)	562, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 272, 536, 925, 1123, 1124
Bse1I	ACTGG	2 cut(s)	277, 493
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	6 cut(s)	89, 272, 536, 925, 1123, 1124
BseMII	CTCAG	4 cut(s)	159, 165, 536, 1110
BseNI	ACTGG	2 cut(s)	277, 493
BseRI	GAGGAG	3 cut(s)	429, 552, 905
BseSI	GKGCMC	3 cut(s)	300, 689, 855
BseXI	GCAGC	4 cut(s)	220, 485, 586, 760
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	298, 836
BsiHKAI	GWGCWC	3 cut(s)	139, 466, 855
BsiSI	CCGG	4 cut(s)	22, 563, 675, 1026
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	6 cut(s)	89, 272, 536, 925, 1123, 1124
BsmAI	GTCTC	2 cut(s)	256, 996
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	298, 836
Bso31I	GGTCTC	1 cut(s)	256
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	5 cut(s)	139, 300, 466, 689, 855
Bsp1407I	TGTACA	1 cut(s)	1057
Bsp143I	GATC	3 cut(s)	559, 740, 813
BspACI	CCGC	3 cut(s)	83, 919, 979
BspANI	GGCC	2 cut(s)	298, 836
BspCNI	CTCAG	4 cut(s)	160, 166, 537, 1111
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	277, 298
BspPI	GGATC	2 cut(s)	554, 735
BspTNI	GGTCTC	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	1057
BsrI	ACTGG	2 cut(s)	277, 493
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	559, 740, 813
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	387, 875, 1164
BstAUI	TGTACA	1 cut(s)	1057
BstC8I	GCNNGC	3 cut(s)	238, 314, 660
BstDEI	CTNAG	7 cut(s)	153, 168, 174, 467, 545, 608, 1119
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	562, 743, 816
BstMAI	GTCTC	2 cut(s)	256, 996
BstMBI	GATC	3 cut(s)	559, 740, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	21, 496
BstSLI	GKGCMC	3 cut(s)	300, 689, 855
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	220, 485, 586, 760
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	813
BstYI	RGATCY	1 cut(s)	813
BsuRI	GGCC	2 cut(s)	298, 836
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	238, 314, 660
Cfr13I	GGNCC	4 cut(s)	275, 296, 297, 871
Csp6I	GTAC	2 cut(s)	217, 1058
CspCI	CAANNNNNGTGG	2 cut(s)	826, 861
CviAII	CATG	3 cut(s)	214, 805, 832
CviQI	GTAC	2 cut(s)	217, 1058
DdeI	CTNAG	7 cut(s)	153, 168, 174, 467, 545, 608, 1119
DpnI	GATC	3 cut(s)	561, 742, 815
DpnII	GATC	3 cut(s)	559, 740, 813
EaeI	YGGCCR	1 cut(s)	834
Ecl136II	GAGCTC	2 cut(s)	137, 464
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	3 cut(s)	139, 300, 466
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	275, 871
Eco53kI	GAGCTC	2 cut(s)	137, 464
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	2 cut(s)	137, 464
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	241
EcoT38I	GRGCYC	3 cut(s)	139, 300, 466
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	217, 808, 835
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	3 cut(s)	213, 804, 831
FauI	CCCGC	2 cut(s)	90, 972
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	234, 474, 600, 774
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	3 cut(s)	139, 300, 466
Fsp4HI	GCNGC	4 cut(s)	234, 474, 600, 774
GluI	GCNGC	4 cut(s)	234, 474, 600, 774
GsuI	CTGGAG	1 cut(s)	1089
HaeIII	GGCC	2 cut(s)	298, 836
HapII	CCGG	4 cut(s)	22, 563, 675, 1026
Hin1II	CATG	3 cut(s)	217, 808, 835
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	6 cut(s)	149, 252, 540, 760, 1022, 1094
HpaII	CCGG	4 cut(s)	22, 563, 675, 1026
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	2 cut(s)	251, 257
Hpy188III	TCNNGA	7 cut(s)	45, 428, 483, 544, 926, 968, 1040
Hpy8I	GTNNAC	1 cut(s)	853
HpyAV	CCTTC	5 cut(s)	42, 252, 514, 965, 1117
HpyCH4III	ACNGT	3 cut(s)	387, 875, 1164
HpyCH4V	TGCA	7 cut(s)	286, 316, 383, 699, 752, 819, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	7 cut(s)	153, 168, 174, 467, 545, 608, 1119
Hsp92II	CATG	3 cut(s)	217, 808, 835
Kzo9I	GATC	3 cut(s)	559, 740, 813
LmnI	GCTCC	3 cut(s)	442, 461, 596
Lsp1109I	GCAGC	4 cut(s)	220, 485, 586, 760
LweI	GCATC	5 cut(s)	255, 661, 745, 813, 918
MaeIII	GTNAC	2 cut(s)	950, 1112
MalI	GATC	3 cut(s)	561, 742, 815
MboI	GATC	3 cut(s)	559, 740, 813
MboII	GAAGA	5 cut(s)	105, 111, 430, 529, 998
MflI	RGATCY	1 cut(s)	813
MhlI	GDGCHC	5 cut(s)	139, 300, 466, 689, 855
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	5 cut(s)	180, 478, 553, 570, 1008
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	3 cut(s)	158, 549, 1103
Mox20I	TGGCCA	1 cut(s)	836
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	2 cut(s)	389, 1074
MslI	CAYNNNNRTG	1 cut(s)	1010
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	4 cut(s)	22, 563, 675, 1026
MspR9I	CCNGG	2 cut(s)	23, 498
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	470
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	3 cut(s)	559, 740, 813
NlaIII	CATG	3 cut(s)	217, 808, 835
NlaIV	GGNNCC	2 cut(s)	277, 298
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	1112
NspI	RCATGY	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	252, 760, 1022
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	235, 475, 601, 775
PleI	GAGTC	3 cut(s)	157, 548, 1102
PpsI	GAGTC	3 cut(s)	157, 548, 1102
Psp124BI	GAGCTC	2 cut(s)	139, 466
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	2 cut(s)	277, 298
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	4 cut(s)	275, 296, 297, 871
PsuI	RGATCY	1 cut(s)	813
RsaI	GTAC	2 cut(s)	218, 1059
RsaNI	GTAC	2 cut(s)	217, 1058
RseI	CAYNNNNRTG	1 cut(s)	1010
SacI	GAGCTC	2 cut(s)	139, 466
SaqAI	TTAA	2 cut(s)	389, 1074
SatI	GCNGC	4 cut(s)	234, 474, 600, 774
Sau3AI	GATC	3 cut(s)	559, 740, 813
Sau96I	GGNCC	4 cut(s)	275, 296, 297, 871
SchI	GAGTC	3 cut(s)	158, 549, 1103
ScrFI	CCNGG	2 cut(s)	23, 498
SduI	GDGCHC	5 cut(s)	139, 300, 466, 689, 855
SfaNI	GCATC	5 cut(s)	255, 661, 745, 813, 918
SinI	GGWCC	2 cut(s)	275, 871
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	180, 478, 553, 570, 1008
SsiI	CCGC	3 cut(s)	83, 919, 979
SspI	AATATT	1 cut(s)	343
SstI	GAGCTC	2 cut(s)	139, 466
StyD4I	CCNGG	2 cut(s)	21, 496
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	387, 875, 1164
TaqI	TCGA	3 cut(s)	133, 739, 1097
TasI	AATT	5 cut(s)	180, 478, 553, 570, 1008
TatI	WGTACW	1 cut(s)	1057
TfiI	GAWTC	3 cut(s)	252, 760, 1022
Tru1I	TTAA	2 cut(s)	389, 1074
Tru9I	TTAA	2 cut(s)	389, 1074
TseFI	GTSAC	1 cut(s)	1112
TseI	GCWGC	4 cut(s)	233, 473, 599, 773
Tsp45I	GTSAC	1 cut(s)	1112
TspDTI	ATGAA	4 cut(s)	99, 240, 600, 639
TspGWI	ACGGA	1 cut(s)	983
Van91I	CCANNNNNTGG	1 cut(s)	272
VneI	GTGCAC	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	275, 871
XapI	RAATTY	2 cut(s)	478, 553
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.