Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Reverse (-)

19552142 .. 19555531

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAATGTTGATGAATCAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCTTTGGCAATGTTCTTAGTGCTAATTTGGGTCAAGCTCCTGCTCGTCAAGCTGCTTTAGGTGCAGGAATCCCTAACTCTGTTATCTGTACTACAGTTAACAAGGTTTGTGCATCAGGCATGAAAGCGGTAATGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAGGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGATGGACTATGGGATGTCTATAACGACTGTGGGATGGGAAGCTGTGCAGAATTATGCGCTGAGAAGTTTCAGATTACAAGGGAGCAGCAAGATGACTATGCAGTTCAGAGTTTTGAGCGTGGTATTGCTGCCCAGGAAGCTGGCGCCTTCACATGGGAAATCGTCCCGGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAGGACGAAGGTCTTGGGAAGTTTGATGCTGCAAAATTGAGGAAACTCCGTCCTAGTTTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATTAAAGGGTATGGTGACGCAGCTCAGGAACCAGAGTTTTTCACTACTGCTCCTGCTCTTGCTATACCAAAAGCCATTGCACATGCTGGTTTGGAATCTTCTCAAGTTGATTACTATGAGATCAATGAAGCATTTGCAGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAGAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGCTGCAGTGGCGCCCGTATTCTAATCACGTTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGAGGAGTGTGCAACGGAGGAGGAGGTGCTTCTGCTCTAGTTCTTGAGCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

398

Amino Acids

40.88

Weight (kDa)

5.79

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	13 - 272	3.7e-94	Thiolase, N-terminal domain
Thiolase_C	PF02803	282 - 401	1.8e-45	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	2 cut(s)	590, 1079
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	798
AciI	CCGC	3 cut(s)	293, 347, 798
AclWI	GGATC	5 cut(s)	76, 109, 137, 335, 412
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	2 cut(s)	591, 1080
AfaI	GTAC	3 cut(s)	46, 256, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	56, 600
AgsI	TTSAA	5 cut(s)	127, 158, 445, 620, 721
AjnI	CCWGG	1 cut(s)	579
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	1 cut(s)	1054
AlwI	GGATC	5 cut(s)	76, 109, 137, 335, 412
Ama87I	CYCGRG	1 cut(s)	1007
AoxI	GGCC	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	506, 593, 1082
AsuC2I	CCSGG	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	1007
AxyI	CCTNAGG	1 cut(s)	1054
BanI	GGYRCC	2 cut(s)	590, 1079
BanII	GRGCYC	1 cut(s)	1191
Bbv12I	GWGCWC	1 cut(s)	1191
BccI	CCATC	5 cut(s)	428, 443, 475, 652, 764
BciT130I	CCWGG	1 cut(s)	581
BciVI	GTATCC	2 cut(s)	326, 1101
BcnI	CCSGG	1 cut(s)	614
BcoDI	GTCTC	1 cut(s)	1054
BfaI	CTAG	7 cut(s)	714, 759, 791, 818, 827, 1067, 1178
BfmI	CTRYAG	2 cut(s)	258, 1072
BfoI	RGCGCY	2 cut(s)	594, 1083
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	2 cut(s)	326, 1101
Bme1390I	CCNGG	2 cut(s)	581, 614
BmeT110I	CYCGRG	1 cut(s)	1007
BmiI	GGNNCC	3 cut(s)	592, 870, 1081
BmrFI	CCNGG	2 cut(s)	581, 614
BmsI	GCATC	2 cut(s)	287, 676
BoxI	GACNNNNGTC	1 cut(s)	669
BpmI	CTGGAG	2 cut(s)	648, 1002
Bpu10I	CCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	927
BpuMI	CCSGG	1 cut(s)	614
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	2 cut(s)	591, 1080
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	6 cut(s)	723, 753, 874, 904, 1032, 1062
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 600
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	1054
Bse3DI	GCAATG	2 cut(s)	181, 915
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	3 cut(s)	454, 466, 486
BseLI	CCNNNNNNNGG	2 cut(s)	56, 600
BseMI	GCAATG	2 cut(s)	181, 915
BseMII	CTCAG	2 cut(s)	498, 878
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	4 cut(s)	1056, 1158, 1173, 1176
BsgI	GTGCAG	3 cut(s)	249, 513, 795
BshFI	GGCC	1 cut(s)	643
BshNI	GGYRCC	2 cut(s)	590, 1079
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiHKCI	CYCGRG	1 cut(s)	1007
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	2 cut(s)	596, 748
BslI	CCNNNNNNNGG	2 cut(s)	56, 600
BsmAI	GTCTC	1 cut(s)	1054
BsmFI	GGGAC	2 cut(s)	596, 748
BsnI	GGCC	1 cut(s)	643
BsoBI	CYCGRG	1 cut(s)	1007
Bsp1286I	GDGCHC	1 cut(s)	1191
Bsp143I	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
BspACI	CCGC	3 cut(s)	293, 347, 798
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	2 cut(s)	499, 877
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	592, 870, 1081
BspMAI	CTGCAG	1 cut(s)	1076
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	5 cut(s)	76, 109, 137, 335, 412
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	2 cut(s)	590, 1079
BsrBI	CCGCTC	1 cut(s)	798
BsrDI	GCAATG	2 cut(s)	181, 915
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
BssNI	GRCGYC	2 cut(s)	591, 1080
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	4 cut(s)	262, 476, 739, 1136
Bst6I	CTCTTC	4 cut(s)	122, 628, 816, 1112
BstACI	GRCGYC	2 cut(s)	591, 1080
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	4 cut(s)	182, 507, 864, 1054
BstF5I	GGATG	3 cut(s)	454, 466, 486
BstH2I	RGCGCY	2 cut(s)	594, 1083
BstHHI	GCGC	3 cut(s)	506, 593, 1082
BstKTI	GATC	6 cut(s)	71, 104, 145, 330, 407, 963
BstMAI	GTCTC	1 cut(s)	1054
BstMBI	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 215, 227, 584, 752, 983, 1077
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	2 cut(s)	367, 926
BstPAI	GACNNNNGTC	1 cut(s)	669
BstSCI	CCNGG	2 cut(s)	579, 612
BstSFI	CTRYAG	2 cut(s)	258, 1072
BstX2I	RGATCY	3 cut(s)	68, 101, 404
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	3 cut(s)	68, 101, 404
Bsu36I	CCTNAGG	1 cut(s)	1054
BsuI	GTATCC	2 cut(s)	326, 1101
BsuRI	GGCC	1 cut(s)	643
BtsCI	GGATG	3 cut(s)	454, 466, 486
BtsI	GCAGTG	1 cut(s)	1081
BtsIMutI	CAGTG	1 cut(s)	1081
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	589
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	3 cut(s)	506, 593, 1082
CseI	GACGC	2 cut(s)	744, 866
Csp6I	GTAC	3 cut(s)	45, 255, 1132
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	5 cut(s)	286, 364, 419, 600, 923
CviQI	GTAC	3 cut(s)	45, 255, 1132
DdeI	CTNAG	4 cut(s)	182, 507, 864, 1054
DinI	GGCGCC	2 cut(s)	592, 1081
DpnI	GATC	6 cut(s)	70, 103, 144, 329, 406, 962
DpnII	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
Eam1104I	CTCTTC	4 cut(s)	122, 628, 816, 1112
EarI	CTCTTC	4 cut(s)	122, 628, 816, 1112
Ecl136II	GAGCTC	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	1191
Eco53kI	GAGCTC	1 cut(s)	1189
Eco57I	CTGAAG	1 cut(s)	797
Eco81I	CCTNAGG	1 cut(s)	1054
Eco88I	CYCGRG	1 cut(s)	1007
EcoICRI	GAGCTC	1 cut(s)	1189
EcoRII	CCWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	1191
EgeI	GGCGCC	2 cut(s)	592, 1081
EheI	GGCGCC	2 cut(s)	592, 1081
FaeI	CATG	5 cut(s)	289, 367, 422, 603, 926
FaqI	GGGAC	2 cut(s)	596, 748
FatI	CATG	5 cut(s)	285, 363, 418, 599, 922
FauI	CCCGC	1 cut(s)	340
FokI	GGATG	3 cut(s)	461, 473, 493
FriOI	GRGCYC	1 cut(s)	1191
FspBI	CTAG	7 cut(s)	714, 759, 791, 818, 827, 1067, 1178
GlaI	GCGC	3 cut(s)	505, 592, 1081
GsuI	CTGGAG	2 cut(s)	648, 1002
HaeII	RGCGCY	2 cut(s)	594, 1083
HaeIII	GGCC	1 cut(s)	643
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	2 cut(s)	744, 866
HhaI	GCGC	3 cut(s)	506, 593, 1082
Hin1I	GRCGYC	2 cut(s)	591, 1080
Hin1II	CATG	5 cut(s)	289, 367, 422, 603, 926
Hin6I	GCGC	3 cut(s)	504, 591, 1080
HinP1I	GCGC	3 cut(s)	504, 591, 1080
HincII	GTYRAC	2 cut(s)	265, 658
HindII	GTYRAC	2 cut(s)	265, 658
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	14, 234, 422, 935
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	3 cut(s)	265, 658, 1030
Hpy188I	TCNGA	4 cut(s)	19, 68, 519, 555
Hpy188III	TCNNGA	7 cut(s)	158, 419, 627, 866, 1009, 1019, 1184
Hpy8I	GTNNAC	3 cut(s)	265, 658, 1030
HpyAV	CCTTC	5 cut(s)	394, 439, 604, 662, 799
HpyCH4III	ACNGT	4 cut(s)	262, 476, 739, 1136
HpyCH4IV	ACGT	3 cut(s)	43, 1032, 1097
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 215, 227, 584, 752, 983, 1077
HpyF3I	CTNAG	4 cut(s)	182, 507, 864, 1054
HpySE526I	ACGT	3 cut(s)	43, 1032, 1097
Hsp92I	GRCGYC	2 cut(s)	591, 1080
Hsp92II	CATG	5 cut(s)	289, 367, 422, 603, 926
HspAI	GCGC	3 cut(s)	504, 591, 1080
KasI	GGCGCC	2 cut(s)	590, 1079
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	6 cut(s)	208, 529, 895, 1021, 1043, 1194
LweI	GCATC	2 cut(s)	287, 676
MaeI	CTAG	7 cut(s)	714, 759, 791, 818, 827, 1067, 1178
MaeII	ACGT	3 cut(s)	43, 1032, 1097
MaeIII	GTNAC	2 cut(s)	739, 854
MalI	GATC	6 cut(s)	70, 103, 144, 329, 406, 962
MbiI	CCGCTC	1 cut(s)	798
MboI	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
MboII	GAAGA	5 cut(s)	139, 645, 803, 930, 1129
MflI	RGATCY	3 cut(s)	68, 101, 404
MhlI	GDGCHC	1 cut(s)	1191
MluCI	AATT	4 cut(s)	190, 497, 695, 840
Mly113I	GGCGCC	2 cut(s)	591, 1080
MseI	TTAA	2 cut(s)	264, 843
MspA1I	CMGCKG	3 cut(s)	119, 746, 779
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	2 cut(s)	581, 614
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	7 cut(s)	116, 215, 227, 584, 752, 983, 1077
NarI	GGCGCC	2 cut(s)	591, 1080
NciI	CCSGG	1 cut(s)	614
NdeII	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
NlaIII	CATG	5 cut(s)	289, 367, 422, 603, 926
NlaIV	GGNNCC	3 cut(s)	592, 870, 1081
NmuCI	GTSAC	1 cut(s)	854
NspI	RCATGY	2 cut(s)	367, 926
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	816
PfeI	GAWTC	4 cut(s)	14, 234, 422, 935
PflMI	CCANNNNNTGG	1 cut(s)	56
PluTI	GGCGCC	2 cut(s)	594, 1083
Ppu21I	YACGTR	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	1191
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	592, 870, 1081
PstI	CTGCAG	1 cut(s)	1076
PsuI	RGATCY	3 cut(s)	68, 101, 404
PvuII	CAGCTG	3 cut(s)	119, 746, 779
RsaI	GTAC	3 cut(s)	46, 256, 1133
RsaNI	GTAC	3 cut(s)	45, 255, 1132
SacI	GAGCTC	1 cut(s)	1191
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	264, 843
Sau3AI	GATC	6 cut(s)	68, 101, 142, 327, 404, 960
ScrFI	CCNGG	2 cut(s)	581, 614
SduI	GDGCHC	1 cut(s)	1191
SfaNI	GCATC	2 cut(s)	287, 676
SfcI	CTRYAG	2 cut(s)	258, 1072
SfoI	GGCGCC	2 cut(s)	592, 1081
SmlI	CTYRAG	2 cut(s)	942, 1184
SmoI	CTYRAG	2 cut(s)	942, 1184
Sse9I	AATT	4 cut(s)	190, 497, 695, 840
SsiI	CCGC	3 cut(s)	293, 347, 798
SspDI	GGCGCC	2 cut(s)	590, 1079
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	7 cut(s)	714, 759, 791, 818, 827, 1067, 1178
SstI	GAGCTC	1 cut(s)	1191
StyD4I	CCNGG	2 cut(s)	579, 612
TaaI	ACNGT	4 cut(s)	262, 476, 739, 1136
TaiI	ACGT	3 cut(s)	46, 1035, 1100
TasI	AATT	4 cut(s)	190, 497, 695, 840
TatI	WGTACW	1 cut(s)	254
TfiI	GAWTC	4 cut(s)	14, 234, 422, 935
Tru1I	TTAA	2 cut(s)	264, 843
Tru9I	TTAA	2 cut(s)	264, 843
TscAI	CASTG	1 cut(s)	1081
TseFI	GTSAC	1 cut(s)	854
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	5 cut(s)	17, 27, 66, 302, 981
TspGWI	ACGGA	3 cut(s)	698, 1140, 1170
TspRI	CASTG	1 cut(s)	1081
Van91I	CCANNNNNTGG	1 cut(s)	56
XceI	RCATGY	2 cut(s)	367, 926
XspI	CTAG	7 cut(s)	714, 759, 791, 818, 827, 1067, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.