Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Forward (+)

10233495 .. 10238589

Gene Structure 5095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1117800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCTCCAGTTGCAGCAGAAGCATGTTCTGATTCAATCAAGCCGAGAGATGTTTACATTGTTGGTGTTGCAAGAACACCAATGGGTGGTTTTCTGGGTGCACTTTCATCTGTACCTGCCACCAAGCTTGGGTCTATAGCTATTGGGGCTGCTCTCAAGAGGGCAAATGTTGATCCAGCACTTGTAGAAGAAGTTTTCTTCGGCAATGTTCTCAGTGCAAACTTGGGGCAGGCCCCTGCTAGACAAGCTGCACTAGGTGCAGGACTCCCTAATTCAGTGATCTGTACCACTGTTAACAAAGTCTGCGCATCAGGGTTGAAAGCTACTATGCTCGCAGCACAGAGCATTCAGTTGGGTATCAATGACGTTGTTGTGGCTGGTGGCATGGAAAGCATGTCTAACGTGCCCAAGTATTTTGCCGAAGCAAGGAAGGGTTCTCGACTTGGACATGATTCTCTTGTTGATGGAATGCTGAAGGACGGTTTGTGGGATGTCTACAATGATTATGGCATGGGAGTGTGCGCTGAATTATGTGCTGAGCAGCATTCAGTGACAAGGGAGGAGCAGGATAACTTTGCTGTTCAGAGCTTCGAGCGTGGTATTGCTGCCCAAGGCTGTGATGCCTTTTCATGGGAAATTGTTCCGGTTGAAGTTTCTGGAGGAAGGGGAAGGCCATCAACAATTGTTGATAAGGATGAAGGTCTAGGCAAGTTTGACGCTGCCAAATTGCGGAAGCTCCGACCAAGTTTTAAGGAGAGTGGAGGTTCTGTTACTGCCGGAAATGCTTCTAGTATCAGTGATGGTGCTGCAGCATTAGTTTTAGCAAGTGGAGAAAAGGTATTAAAGCTTGGGCTACAAGTGATTGCAAAGATCAGTGGATTCGCCGATGCTGCTCAGGCACCAGAACTATTTACAACAGCTCCGGCTCTTGCGATTCCAAAAGCTATTTCAAATGCTGGGTTGGAAGCTTCTCAAATTGACTTCTATGAAATTAATGAAGCGTTTGCTGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACCCAGAAAAAGTTAATGTGCATGGTGGAGCTGTAGCATTGGGACATCCTCTTGGTTGCAGTGGAGCTCGTATCTTGGTCACCCTTTTAGGGGTACTGAAGCAGAAGAACGGGAAATACGGTGCTGCTGGTATTTGCAACGGTGGAGGAGGTGCATCTGCCCTTGTTTTGGAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

409

Amino Acids

41.68

Weight (kDa)

5.91

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	18 - 276	8.6e-91	Thiolase, N-terminal domain
Thiolase_C	PF02803	286 - 406	1.8e-45	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	898
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	730
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	494, 1163
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	3 cut(s)	114, 286, 1140
AfiI	CCNNNNNNNGG	8 cut(s)	86, 129, 426, 630, 729, 1134, 1135, 1213
AgsI	TTSAA	4 cut(s)	36, 319, 650, 951
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
Alw21I	GWGCWC	2 cut(s)	103, 1114
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	2 cut(s)	231, 671
ApaLI	GTGCAC	1 cut(s)	99
AseI	ATTAAT	1 cut(s)	993
Asp700I	GAANNNNTTC	2 cut(s)	639, 784
AspLEI	GCGC	2 cut(s)	308, 524
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	1117
BaeGI	GKGCMC	2 cut(s)	103, 408
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	1114
Bbv12I	GWGCWC	2 cut(s)	103, 1114
BccI	CCATC	3 cut(s)	458, 682, 794
BfaI	CTAG	4 cut(s)	240, 254, 704, 789
BfmI	CTRYAG	3 cut(s)	135, 807, 1077
BfuAI	ACCTGC	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	6, 234, 900
BmsI	GCATC	4 cut(s)	317, 610, 877, 1208
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	7 cut(s)	753, 783, 822, 852, 904, 934, 1208
Bsc4I	CCNNNNNNNGG	8 cut(s)	86, 129, 426, 630, 729, 1134, 1135, 1213
Bse1I	ACTGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	3 cut(s)	496, 700, 1090
BseLI	CCNNNNNNNGG	8 cut(s)	86, 129, 426, 630, 729, 1134, 1135, 1213
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	226, 528, 908
BseNI	ACTGG	1 cut(s)	8
BseRI	GAGGAG	2 cut(s)	575, 1206
BseSI	GKGCMC	2 cut(s)	103, 408
BseYI	CCCAGC	1 cut(s)	956
BsgI	GTGCAG	2 cut(s)	234, 279
BshFI	GGCC	2 cut(s)	233, 673
BshNI	GGYRCC	1 cut(s)	898
BsiHKAI	GWGCWC	2 cut(s)	103, 1114
BsiSI	CCGG	3 cut(s)	644, 777, 923
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	8 cut(s)	86, 129, 426, 630, 729, 1134, 1135, 1213
BsmFI	GGGAC	1 cut(s)	1101
BsmI	GAATGC	3 cut(s)	345, 474, 544
BsnI	GGCC	2 cut(s)	233, 673
Bsp1286I	GDGCHC	3 cut(s)	103, 408, 1114
Bsp143I	GATC	3 cut(s)	172, 279, 870
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	2 cut(s)	233, 673
BspCNI	CTCAG	3 cut(s)	225, 529, 907
BspLI	GGNNCC	3 cut(s)	6, 234, 900
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	898
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	3 cut(s)	172, 279, 870
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	4 cut(s)	292, 482, 1166, 1187
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	231, 333
BstDEI	CTNAG	3 cut(s)	212, 537, 894
BstEII	GGTNACC	1 cut(s)	1123
BstF5I	GGATG	3 cut(s)	496, 700, 1090
BstHHI	GCGC	2 cut(s)	308, 524
BstKTI	GATC	3 cut(s)	175, 282, 873
BstMBI	GATC	3 cut(s)	172, 279, 870
BstNSI	RCATGY	2 cut(s)	27, 397
BstPI	GGTNACC	1 cut(s)	1123
BstSFI	CTRYAG	3 cut(s)	135, 807, 1077
BstSLI	GKGCMC	2 cut(s)	103, 408
BsuRI	GGCC	2 cut(s)	233, 673
BtsCI	GGATG	3 cut(s)	496, 700, 1090
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	7 cut(s)	220, 282, 288, 555, 802, 880, 1111
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	231, 333
CfoI	GCGC	2 cut(s)	308, 524
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	113, 285, 1139
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	7 cut(s)	24, 385, 394, 449, 511, 630, 1067
CviQI	GTAC	3 cut(s)	113, 285, 1139
DdeI	CTNAG	3 cut(s)	212, 537, 894
DpnI	GATC	3 cut(s)	174, 281, 872
DpnII	GATC	3 cut(s)	172, 279, 870
DraIII	CACNNNGTG	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	1112
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	1114
Eco53kI	GAGCTC	1 cut(s)	1112
Eco57I	CTGAAG	2 cut(s)	494, 1163
Eco91I	GGTNACC	1 cut(s)	1123
EcoICRI	GAGCTC	1 cut(s)	1112
EcoO109I	RGGNCCY	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	1123
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	1114
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	7 cut(s)	27, 388, 397, 452, 514, 633, 1070
FaqI	GGGAC	1 cut(s)	1101
FatI	CATG	7 cut(s)	23, 384, 393, 448, 510, 629, 1066
FblI	GTMKAC	1 cut(s)	495
FokI	GGATG	3 cut(s)	503, 707, 1077
FriOI	GRGCYC	1 cut(s)	1114
FspBI	CTAG	4 cut(s)	240, 254, 704, 789
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	2 cut(s)	307, 523
GsaI	CCCAGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	233, 673
HapII	CCGG	3 cut(s)	644, 777, 923
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	2 cut(s)	308, 524
Hin1II	CATG	7 cut(s)	27, 388, 397, 452, 514, 633, 1070
Hin6I	GCGC	2 cut(s)	306, 522
HinP1I	GCGC	2 cut(s)	306, 522
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	3 cut(s)	125, 845, 966
HinfI	GANTC	5 cut(s)	32, 264, 452, 879, 934
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	3 cut(s)	644, 777, 923
HphI	GGTGA	1 cut(s)	1117
Hpy166II	GTNNAC	4 cut(s)	55, 101, 295, 496
Hpy188I	TCNGA	4 cut(s)	31, 585, 740, 1029
Hpy188III	TCNNGA	3 cut(s)	157, 438, 657
Hpy8I	GTNNAC	4 cut(s)	55, 101, 295, 496
HpyAV	CCTTC	5 cut(s)	424, 469, 657, 663, 692
HpyCH4III	ACNGT	4 cut(s)	292, 482, 1166, 1187
HpyCH4IV	ACGT	2 cut(s)	366, 402
HpyF3I	CTNAG	3 cut(s)	212, 537, 894
HpySE526I	ACGT	2 cut(s)	366, 402
Hsp92II	CATG	7 cut(s)	27, 388, 397, 452, 514, 633, 1070
HspAI	GCGC	2 cut(s)	306, 522
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	172, 279, 870
LmnI	GCTCC	7 cut(s)	10, 562, 741, 925, 1073, 1109, 1216
LweI	GCATC	4 cut(s)	317, 610, 877, 1208
MaeI	CTAG	4 cut(s)	240, 254, 704, 789
MaeII	ACGT	2 cut(s)	366, 402
MaeIII	GTNAC	3 cut(s)	550, 769, 1123
MalI	GATC	3 cut(s)	174, 281, 872
MboI	GATC	3 cut(s)	172, 279, 870
MboII	GAAGA	3 cut(s)	190, 200, 1162
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	3 cut(s)	103, 408, 1114
MluCI	AATT	7 cut(s)	271, 527, 636, 681, 725, 975, 990
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	2 cut(s)	763, 942
MnlI	CCTC	7 cut(s)	153, 553, 653, 755, 1104, 1184, 1187
MroXI	GAANNNNTTC	2 cut(s)	639, 784
MseI	TTAA	6 cut(s)	294, 750, 842, 993, 1044, 1059
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	644, 777, 923
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	3 cut(s)	345, 474, 544
NdeII	GATC	3 cut(s)	172, 279, 870
NlaIII	CATG	7 cut(s)	27, 388, 397, 452, 514, 633, 1070
NlaIV	GGNNCC	3 cut(s)	6, 234, 900
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	550, 1123
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	2 cut(s)	27, 397
PctI	GAATGC	3 cut(s)	345, 474, 544
PdmI	GAANNNNTTC	2 cut(s)	639, 784
PfeI	GAWTC	4 cut(s)	32, 452, 879, 934
PflMI	CCANNNNNTGG	1 cut(s)	86
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	993
Psp124BI	GAGCTC	1 cut(s)	1114
PspEI	GGTNACC	1 cut(s)	1123
PspFI	CCCAGC	1 cut(s)	956
PspN4I	GGNNCC	3 cut(s)	6, 234, 900
PspPI	GGNCC	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	1145, 1177
PstI	CTGCAG	1 cut(s)	811
RsaI	GTAC	3 cut(s)	114, 286, 1140
RsaNI	GTAC	3 cut(s)	113, 285, 1139
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	1114
SaqAI	TTAA	6 cut(s)	294, 750, 842, 993, 1044, 1059
Sau3AI	GATC	3 cut(s)	172, 279, 870
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	3 cut(s)	103, 408, 1114
SfaNI	GCATC	4 cut(s)	317, 610, 877, 1208
SfcI	CTRYAG	3 cut(s)	135, 807, 1077
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	7 cut(s)	271, 527, 636, 681, 725, 975, 990
SsiI	CCGC	1 cut(s)	730
SspMI	CTAG	4 cut(s)	240, 254, 704, 789
SstI	GAGCTC	1 cut(s)	1114
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	4 cut(s)	292, 482, 1166, 1187
TaiI	ACGT	2 cut(s)	369, 405
TaqI	TCGA	2 cut(s)	439, 591
TasI	AATT	7 cut(s)	271, 527, 636, 681, 725, 975, 990
TfiI	GAWTC	4 cut(s)	32, 452, 879, 934
Tru1I	TTAA	6 cut(s)	294, 750, 842, 993, 1044, 1059
Tru9I	TTAA	6 cut(s)	294, 750, 842, 993, 1044, 1059
TscAI	CASTG	7 cut(s)	220, 282, 295, 555, 802, 880, 1111
TseFI	GTSAC	2 cut(s)	550, 1123
Tsp45I	GTSAC	2 cut(s)	550, 1123
TspDTI	ATGAA	5 cut(s)	96, 618, 711, 1002, 1011
TspRI	CASTG	7 cut(s)	220, 282, 295, 555, 802, 880, 1111
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	993
XceI	RCATGY	2 cut(s)	27, 397
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	639, 784
XspI	CTAG	4 cut(s)	240, 254, 704, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.