Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Forward (+)

8428369 .. 8431254

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10830.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTCCAGTTGCAGCAGAAGCATGTTCCGATTCAATCAAGCCGAGAGATGTTTGCATCGTTGGTGTTGCAAGAACACCGATGGGTGGTTTTCTGGGTGCACTTTCATCTGTACCTGCCACCAAGCTTGGGTCTATAGCTATTGAGGCTGCTCTCAAGAGGGCAAATGTTGATCCAGCACTTGTAGAAGAAGTTTTCTTCGGCAATGTTCTCAGTGCAAACTTGGGGCAGGCCCCTGCTAGACAAGCTGCATTAGGTGCAGGACTCCCTAATTCAGTGATCTGTACCACAGTTAACAAAGTCTGCGCATCAGGGTTGAAAGCTACTATGCTCGCAGCACAGAGCATACAGTTGGGTATCAATGACGTTGTTGTGGCTGGTGGCATGGAAAGCATGTCTAACGTGCCCAAGTATTTTGCCGAAGCAAGGAAGGGTTCTCGACTTGGACATGATTCTCTTGTTGATGGAATGCTGAAGGACGGTTTGTGGGATGTCTACAATGATTATGGCATGGGAGTGTGCGCTGAATTATGTGCTGAGCAGCATTCAGTGACAAGGGAGGAGCAGGATAACTTCGCTGTTCAGAGCTTCGAGCGTGGTATTGCTGCCCAAGGCTGTGATGCCTTTTCATGGGAAATTGTTCCGGTTGAAGTTTCTGGAGGAAGGGGAAGGCCATCAACAATTGTTGATAAGGATGAAGGTCTAGGCAAGACGTCCTTATTGTTTGCTTTGCTATCATGTCAGTTTGACGCTGCCAAATTGCGGAAGCTCCGACCAAGTTTTAAGGAGAGTGGAGGTTCTGTTACTGCTGGAAATGCTTCTAGTATCAGTGCATTTTTGTTTTCATATCATTCATACCAATATGCTTACATGAGATTGACTGCACAGGCACCAGAACTATTTACAACAGCTCCGGCTCTTGCGATTCCAAAAGCTATTTCAAATGCTGGGTTGGAAGCTTCTCAAATTGACTTCTATGAAATTAATGAAGCATTTGCTGAAAAAGTTAATGTGCATGGTGGAGCTGTAGCATTGGGACATCCTCTTGGTTGCAGTGGAGCTCGTATCTTGGTACTGAAGCAGAAGAACGGGAAATATGGTGCTGCTGGTATTTGCAACGGCGGAGGAGGTGCATCTGCCCTTGTTTTGGAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

387

Amino Acids

40.09

Weight (kDa)

5.82

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	716
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	889
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	2 cut(s)	763, 1122
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	494, 1097
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	3 cut(s)	114, 286, 1074
AfiI	CCNNNNNNNGG	6 cut(s)	86, 129, 426, 630, 762, 1147
AgsI	TTSAA	4 cut(s)	36, 319, 650, 942
AjuI	GAANNNNNNNTTGG	2 cut(s)	922, 954
Alw21I	GWGCWC	2 cut(s)	103, 1063
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	2 cut(s)	231, 671
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	8 cut(s)	14, 149, 248, 335, 541, 605, 752, 1103
AseI	ATTAAT	1 cut(s)	984
Asp700I	GAANNNNTTC	2 cut(s)	639, 817
AspLEI	GCGC	2 cut(s)	308, 524
AspS9I	GGNCC	1 cut(s)	232
BaeGI	GKGCMC	2 cut(s)	103, 408
BanI	GGYRCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	1063
Bbv12I	GWGCWC	2 cut(s)	103, 1063
BbvI	GCAGC	8 cut(s)	26, 136, 235, 347, 553, 592, 739, 1090
BccI	CCATC	3 cut(s)	76, 458, 682
BceAI	ACGGC	1 cut(s)	1135
BfaI	CTAG	3 cut(s)	240, 704, 822
BfmI	CTRYAG	2 cut(s)	135, 1026
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	8 cut(s)	15, 150, 249, 336, 542, 606, 753, 1104
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	8 cut(s)	16, 151, 250, 337, 543, 607, 754, 1105
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	6, 234, 891
BmsI	GCATC	4 cut(s)	66, 317, 610, 1142
BpmI	CTGGAG	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	5 cut(s)	786, 816, 895, 925, 1142
Bsc4I	CCNNNNNNNGG	6 cut(s)	86, 129, 426, 630, 762, 1147
Bse1I	ACTGG	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	3 cut(s)	496, 700, 1039
BseLI	CCNNNNNNNGG	6 cut(s)	86, 129, 426, 630, 762, 1147
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	226, 528
BseNI	ACTGG	1 cut(s)	8
BseRI	GAGGAG	2 cut(s)	575, 1140
BseSI	GKGCMC	2 cut(s)	103, 408
BseXI	GCAGC	8 cut(s)	26, 136, 235, 347, 553, 592, 739, 1090
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	2 cut(s)	279, 867
BshFI	GGCC	2 cut(s)	233, 673
BshNI	GGYRCC	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	103, 1063
BsiSI	CCGG	2 cut(s)	644, 914
BslFI	GGGAC	1 cut(s)	1050
BslI	CCNNNNNNNGG	6 cut(s)	86, 129, 426, 630, 762, 1147
BsmFI	GGGAC	1 cut(s)	1050
BsmI	GAATGC	2 cut(s)	474, 544
BsnI	GGCC	2 cut(s)	233, 673
Bsp1286I	GDGCHC	3 cut(s)	103, 408, 1063
Bsp143I	GATC	2 cut(s)	172, 279
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	2 cut(s)	763, 1122
BspANI	GGCC	2 cut(s)	233, 673
BspCNI	CTCAG	2 cut(s)	225, 529
BspLI	GGNNCC	3 cut(s)	6, 234, 891
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	889
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	2 cut(s)	172, 279
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	3 cut(s)	292, 351, 482
BstACI	GRCGYC	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	231, 333
BstDEI	CTNAG	2 cut(s)	212, 537
BstF5I	GGATG	3 cut(s)	496, 700, 1039
BstHHI	GCGC	2 cut(s)	308, 524
BstKTI	GATC	2 cut(s)	175, 282
BstMBI	GATC	2 cut(s)	172, 279
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 20, 146, 245, 257, 390, 815
BstNSI	RCATGY	2 cut(s)	27, 397
BstSFI	CTRYAG	2 cut(s)	135, 1026
BstSLI	GKGCMC	2 cut(s)	103, 408
BstV1I	GCAGC	8 cut(s)	26, 136, 235, 347, 553, 592, 739, 1090
BsuRI	GGCC	2 cut(s)	233, 673
BtsCI	GGATG	3 cut(s)	496, 700, 1039
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	5 cut(s)	220, 282, 555, 835, 1060
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	231, 333
CfoI	GCGC	2 cut(s)	308, 524
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	113, 285, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	9 cut(s)	24, 385, 394, 449, 511, 630, 738, 871, 1016
CviQI	GTAC	3 cut(s)	113, 285, 1073
DdeI	CTNAG	2 cut(s)	212, 537
DpnI	GATC	2 cut(s)	174, 281
DpnII	GATC	2 cut(s)	172, 279
EciI	GGCGGA	1 cut(s)	1137
Ecl136II	GAGCTC	1 cut(s)	1061
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	1063
Eco53kI	GAGCTC	1 cut(s)	1061
Eco57I	CTGAAG	2 cut(s)	494, 1097
EcoICRI	GAGCTC	1 cut(s)	1061
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	1063
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	9 cut(s)	27, 388, 397, 452, 514, 633, 741, 874, 1019
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	1050
FatI	CATG	9 cut(s)	23, 384, 393, 448, 510, 629, 737, 870, 1015
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	8 cut(s)	15, 150, 249, 336, 542, 606, 753, 1104
FokI	GGATG	3 cut(s)	503, 707, 1026
FriOI	GRGCYC	1 cut(s)	1063
Fsp4HI	GCNGC	8 cut(s)	15, 150, 249, 336, 542, 606, 753, 1104
FspBI	CTAG	3 cut(s)	240, 704, 822
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	2 cut(s)	307, 523
GluI	GCNGC	8 cut(s)	15, 150, 249, 336, 542, 606, 753, 1104
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	233, 673
HapII	CCGG	2 cut(s)	644, 914
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	2 cut(s)	308, 524
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	9 cut(s)	27, 388, 397, 452, 514, 633, 741, 874, 1019
Hin6I	GCGC	2 cut(s)	306, 522
HinP1I	GCGC	2 cut(s)	306, 522
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	125, 957
HinfI	GANTC	4 cut(s)	32, 264, 452, 925
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	644, 914
Hpy166II	GTNNAC	3 cut(s)	101, 295, 496
Hpy188I	TCNGA	3 cut(s)	31, 585, 773
Hpy188III	TCNNGA	3 cut(s)	157, 438, 657
Hpy8I	GTNNAC	3 cut(s)	101, 295, 496
HpyAV	CCTTC	5 cut(s)	424, 469, 657, 663, 692
HpyCH4III	ACNGT	3 cut(s)	292, 351, 482
HpyCH4IV	ACGT	3 cut(s)	366, 402, 713
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 20, 146, 245, 257, 390, 815
HpyF3I	CTNAG	2 cut(s)	212, 537
HpySE526I	ACGT	3 cut(s)	366, 402, 713
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	9 cut(s)	27, 388, 397, 452, 514, 633, 741, 874, 1019
HspAI	GCGC	2 cut(s)	306, 522
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	172, 279
LmnI	GCTCC	7 cut(s)	10, 562, 774, 916, 1022, 1058, 1150
Lsp1109I	GCAGC	8 cut(s)	26, 136, 235, 347, 553, 592, 739, 1090
LweI	GCATC	4 cut(s)	66, 317, 610, 1142
MaeI	CTAG	3 cut(s)	240, 704, 822
MaeII	ACGT	3 cut(s)	366, 402, 713
MaeIII	GTNAC	2 cut(s)	550, 802
MalI	GATC	2 cut(s)	174, 281
MboI	GATC	2 cut(s)	172, 279
MboII	GAAGA	3 cut(s)	190, 200, 1096
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	3 cut(s)	103, 408, 1063
MluCI	AATT	7 cut(s)	271, 527, 636, 681, 758, 966, 981
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	2 cut(s)	796, 933
MnlI	CCTC	8 cut(s)	139, 153, 553, 653, 788, 1053, 1118, 1121
MroXI	GAANNNNTTC	2 cut(s)	639, 817
MseI	TTAA	4 cut(s)	294, 783, 984, 1008
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	2 cut(s)	644, 914
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	2 cut(s)	474, 544
MwoI	GCNNNNNNNGC	7 cut(s)	11, 20, 146, 245, 257, 390, 815
NdeII	GATC	2 cut(s)	172, 279
NlaIII	CATG	9 cut(s)	27, 388, 397, 452, 514, 633, 741, 874, 1019
NlaIV	GGNNCC	3 cut(s)	6, 234, 891
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	550
NsbI	TGCGCA	1 cut(s)	307
NspI	RCATGY	2 cut(s)	27, 397
PctI	GAATGC	2 cut(s)	474, 544
PdmI	GAANNNNTTC	2 cut(s)	639, 817
PfeI	GAWTC	3 cut(s)	32, 452, 925
PkrI	GCNGC	8 cut(s)	16, 151, 250, 337, 543, 607, 754, 1105
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	984
Psp124BI	GAGCTC	1 cut(s)	1063
PspFI	CCCAGC	1 cut(s)	947
PspN4I	GGNNCC	3 cut(s)	6, 234, 891
PspPI	GGNCC	1 cut(s)	232
RsaI	GTAC	3 cut(s)	114, 286, 1074
RsaNI	GTAC	3 cut(s)	113, 285, 1073
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	1063
SaqAI	TTAA	4 cut(s)	294, 783, 984, 1008
SatI	GCNGC	8 cut(s)	15, 150, 249, 336, 542, 606, 753, 1104
Sau3AI	GATC	2 cut(s)	172, 279
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	258
SduI	GDGCHC	3 cut(s)	103, 408, 1063
SfaNI	GCATC	4 cut(s)	66, 317, 610, 1142
SfcI	CTRYAG	2 cut(s)	135, 1026
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	7 cut(s)	271, 527, 636, 681, 758, 966, 981
SsiI	CCGC	2 cut(s)	763, 1122
SspMI	CTAG	3 cut(s)	240, 704, 822
SstI	GAGCTC	1 cut(s)	1063
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	292, 351, 482
TaiI	ACGT	3 cut(s)	369, 405, 716
TaqI	TCGA	2 cut(s)	439, 591
TasI	AATT	7 cut(s)	271, 527, 636, 681, 758, 966, 981
TfiI	GAWTC	3 cut(s)	32, 452, 925
Tru1I	TTAA	4 cut(s)	294, 783, 984, 1008
Tru9I	TTAA	4 cut(s)	294, 783, 984, 1008
TscAI	CASTG	5 cut(s)	220, 282, 555, 835, 1060
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	8 cut(s)	14, 149, 248, 335, 541, 605, 752, 1103
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	7 cut(s)	96, 618, 711, 834, 843, 993, 1002
TspRI	CASTG	5 cut(s)	220, 282, 555, 835, 1060
VneI	GTGCAC	1 cut(s)	99
VspI	ATTAAT	1 cut(s)	984
XceI	RCATGY	2 cut(s)	27, 397
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	639, 817
XspI	CTAG	3 cut(s)	240, 704, 822
ZraI	GACGTC	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.