Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Reverse (-)

76627683 .. 76631969

Gene Structure 4287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG536400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTGCATTTCTCGGTGCACTTTCATCTTTACCTGCCACCAAGCTTGGATCTATAGCTATTGAGGCTGCTCTTAAAAGAGCAAATGTTGATCCATCCCTTGTAGAAGAAGTTTTCTTCGGCAACGTTCTTAGTGCAAATTTGGGGCAGGCTCCTGCTAGACAAGCAGCATTGGGTGCAGGACTATCTCATTCAGTGGTCTGTACCACTGTTAACAAAGTTTGTGCATCAGGGTTGAAAGCTACTATGCTCGCAGCACAAAGCATCCAGTTGGGCATCAATGATGTTGTTGTTGCTGGTGGTATGGAAAGCATGTCTAATGTGCCCAAGTATCTTGCAGAAGCAAGGAAGGGATCTCGACTTGGACATGATTCTCTTGTTGATGGAATGCTTAAAGACGGTTTGTGGGATGTCTATAACGATTATGGCATGGGAGTCTGTGCTGAATTATGTGCTGATCAGCATTCAGTGTCTAGGGAGGAACAGGATAACTTTGCTGTCCAGAGCTTTGAGCGTGGTATTGCTGCCAAAGACGCTGGTGCCTTTTCATGGGAAATTGTTCCAGTTGAAGTTTCTGGAGGAAGGGGAAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAGGTAATAAAAACTCGTTCTTATGTCAGTCAGACACCCATAAAAATCTTTGTTCTTGTGAAATATCAACTCCCAGTCTATGAACAGTTCAAATCTTTTTTCTTCAAAATGTTCAAATCTGTTGCTCATCATTGCAAATTTGCAATTGCTCATCAACAATATCTCATATACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

267

Amino Acids

28.71

Weight (kDa)

8.2

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	1 - 209	3e-71	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	539
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	3 cut(s)	58, 86, 361
AcsI	RAATTY	2 cut(s)	139, 764
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	5 cut(s)	238, 569, 718, 733, 742
AluBI	AGCT	4 cut(s)	46, 59, 242, 507
AluI	AGCT	4 cut(s)	46, 59, 242, 507
Alw21I	GWGCWC	1 cut(s)	22
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	58, 86, 361
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	68, 167, 254, 524
ApoI	RAATTY	2 cut(s)	139, 764
Asp700I	GAANNNNTTC	1 cut(s)	558
BaeGI	GKGCMC	2 cut(s)	22, 327
BanI	GGYRCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	55, 179, 266, 511
BccI	CCATC	3 cut(s)	103, 377, 601
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	3 cut(s)	159, 474, 623
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	69, 168, 255, 525
BlsI	GCNGC	4 cut(s)	70, 169, 256, 526
BmiI	GGNNCC	2 cut(s)	153, 541
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	236, 273, 285
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	595
BpmI	CTGGAG	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	3 cut(s)	268, 563, 701
Bse3DI	GCAATG	1 cut(s)	757
BseGI	GGATG	4 cut(s)	95, 264, 415, 619
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	757
BseNI	ACTGG	3 cut(s)	268, 563, 701
BseSI	GKGCMC	2 cut(s)	22, 327
BseXI	GCAGC	4 cut(s)	55, 179, 266, 511
BsgI	GTGCAG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmI	GAATGC	2 cut(s)	393, 463
Bsp1286I	GDGCHC	2 cut(s)	22, 327
Bsp143I	GATC	4 cut(s)	50, 91, 353, 457
BspLI	GGNNCC	2 cut(s)	153, 541
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	58, 86, 361
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	268, 563, 701
BssMI	GATC	4 cut(s)	50, 91, 353, 457
Bst4CI	ACNGT	3 cut(s)	211, 401, 714
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	150, 252
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	4 cut(s)	95, 264, 415, 619
BstKTI	GATC	4 cut(s)	53, 94, 356, 460
BstMBI	GATC	4 cut(s)	50, 91, 353, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 164, 176, 533
BstNSI	RCATGY	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	2 cut(s)	22, 327
BstV1I	GCAGC	4 cut(s)	55, 179, 266, 511
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	2 cut(s)	50, 353
BstYI	RGATCY	2 cut(s)	50, 353
BtsCI	GGATG	4 cut(s)	95, 264, 415, 619
BtsIMutI	CAGTG	3 cut(s)	201, 207, 474
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	150, 252
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	204
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	4 cut(s)	313, 368, 430, 549
CviJI	RGCY	6 cut(s)	46, 59, 68, 152, 242, 507
CviKI_1	RGCY	6 cut(s)	46, 59, 68, 152, 242, 507
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	4 cut(s)	52, 93, 355, 459
DpnII	GATC	4 cut(s)	50, 91, 353, 457
FaeI	CATG	4 cut(s)	316, 371, 433, 552
FatI	CATG	4 cut(s)	312, 367, 429, 548
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	69, 168, 255, 525
FokI	GGATG	4 cut(s)	82, 251, 422, 626
Fsp4HI	GCNGC	4 cut(s)	69, 168, 255, 525
FspBI	CTAG	3 cut(s)	159, 474, 623
GluI	GCNGC	4 cut(s)	69, 168, 255, 525
GsuI	CTGGAG	1 cut(s)	597
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	316, 371, 433, 552
HincII	GTYRAC	2 cut(s)	214, 607
HindII	GTYRAC	2 cut(s)	214, 607
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	371, 435
HpaI	GTTAAC	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	20, 214, 607
Hpy188I	TCNGA	1 cut(s)	660
Hpy188III	TCNNGA	3 cut(s)	357, 502, 576
Hpy8I	GTNNAC	3 cut(s)	20, 214, 607
HpyAV	CCTTC	3 cut(s)	343, 576, 611
HpyCH4III	ACNGT	3 cut(s)	211, 401, 714
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	8 cut(s)	8, 20, 137, 179, 227, 338, 762, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 164, 176, 533
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	316, 371, 433, 552
Ksp22I	TGATCA	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	50, 91, 353, 457
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	4 cut(s)	55, 179, 266, 511
LweI	GCATC	3 cut(s)	236, 273, 285
MaeI	CTAG	3 cut(s)	159, 474, 623
MaeII	ACGT	1 cut(s)	126
MalI	GATC	4 cut(s)	52, 93, 355, 459
MboI	GATC	4 cut(s)	50, 91, 353, 457
MboII	GAAGA	4 cut(s)	109, 119, 600, 721
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	2 cut(s)	50, 353
MhlI	GDGCHC	2 cut(s)	22, 327
MluCI	AATT	5 cut(s)	139, 446, 555, 764, 771
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	3 cut(s)	58, 472, 572
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	75, 213, 393
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	393, 463
MwoI	GCNNNNNNNGC	4 cut(s)	65, 164, 176, 533
NdeII	GATC	4 cut(s)	50, 91, 353, 457
NlaIII	CATG	4 cut(s)	316, 371, 433, 552
NlaIV	GGNNCC	2 cut(s)	153, 541
NspI	RCATGY	1 cut(s)	316
PctI	GAATGC	2 cut(s)	393, 463
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	4 cut(s)	70, 169, 256, 526
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
Psp1406I	AACGTT	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	153, 541
PsuI	RGATCY	2 cut(s)	50, 353
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	75, 213, 393
SatI	GCNGC	4 cut(s)	69, 168, 255, 525
Sau3AI	GATC	4 cut(s)	50, 91, 353, 457
SchI	GAGTC	1 cut(s)	444
SduI	GDGCHC	2 cut(s)	22, 327
SetI	ASST	8 cut(s)	37, 48, 61, 129, 244, 509, 622, 633
SfaNI	GCATC	3 cut(s)	236, 273, 285
SfcI	CTRYAG	1 cut(s)	54
Sse9I	AATT	5 cut(s)	139, 446, 555, 764, 771
SspMI	CTAG	3 cut(s)	159, 474, 623
TaaI	ACNGT	3 cut(s)	211, 401, 714
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	358
TasI	AATT	5 cut(s)	139, 446, 555, 764, 771
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	3 cut(s)	75, 213, 393
Tru9I	TTAA	3 cut(s)	75, 213, 393
TscAI	CASTG	3 cut(s)	201, 214, 474
TseI	GCWGC	4 cut(s)	68, 167, 254, 524
TspDTI	ATGAA	4 cut(s)	15, 537, 630, 723
TspRI	CASTG	3 cut(s)	201, 214, 474
VneI	GTGCAC	1 cut(s)	18
XapI	RAATTY	2 cut(s)	139, 764
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	3 cut(s)	159, 474, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.