Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Reverse (-)

32031410 .. 32034952

Gene Structure 3543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCACCAGAAGCATGTGCAGATTCGATTAGTCCTAGAGGTGTTTACATCGTTGGAGTTGCACGAACACCCATGGGTGCATTTCTCGGTGCACTTTCATCTTTACCTGCCACCAAGCTTGGATCTATAGCCATTGAGGCTGCCCTTAAAAGAGCAAATGTTGATCCATCCCTTGTAGAAGAAGTTTTCTTCGGCAACGTTCTTAGTGCAAATTTGGGGCAGGCTCCTGCTAGACAAGCAGCTTTAGGTGCAGGACTATCTCATTCAGTGATCTGTACCACTGTTAACAAAGTCTGTGCATCAGGGTTGAAAGCTACCATGCTCGCAGCACAAAGCATCCAGTTGGGCATCAATGATGTTGTTGTAGCTGGTGGAATGGAAAGCATGTCTAATGTGCCCAAGTATCTTGCAGAAGCAAGGAAGGGTTCTCGACTTGGACATGATTCTCTTGTTGATGGAATGTTGAAAGATGGTCTGTGGGATGTCTACAATGATTACGGCATGGGAGTCTGTGCTGAATTGTGTGCTGATCAGCATTCAGTGACCAGGGAGGAGCAGGATAACTTTGCTTGTCAGAGCTTTGAGCGTGGTATCGCTGCCAAAGATGCTGGTGCATTTTCATGGGAAATTGTTCCAGTTGAGGTTTCTGGAGGAAGGGGAAGGCCATCAACAATTGTTGACAAGGATGAAGGTCTAGGAAAGTTTGACCCTGCCAAATTGAGGAAGCTCAGACCCAGTTTTAAGGAGACCGGAGGTTCTGTTACTGCTGGCAATGCTTCTAGCATAAGTGATGGAGCTGCTGCATTAGTTCTAGTGAGTGGAGAGAAGGTACTAAAGCTTGGGCTACAAGTGATAGCAAAGATTAGTGGATTCGCTGATGCTGCTCAGGCACCAGAATTATTCACAACAGCTCCTTCCCTTGCAATTCCAAAAGCCATTTCAAACGCTGGCTTAGAAGCTTCTCAAATCGACTACTATGAAATCAATGAAGCCTTTGCTGTCGTGGCTCTTGCAAACCAGAAACTCCTTGGACTTGACCCAGCCAAAGTTAATGTCCATGGTGGAGCCGTAGCTTTGGGACATCCTCTTGGTTGCAGTGGAGCTCGTATCTTGGTCACTCTTTTAGGAGTACTGAAACAGAAGAGCGCGAAATATGGTGTTAGCGGTATTTGCAACGGTGGAGGTGGTGCATCTGCTCTTGTTCTGGAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

406

Amino Acids

41.45

Weight (kDa)

6.02

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	15 - 274	8.5e-92	Thiolase, N-terminal domain
Thiolase_C	PF02803	283 - 403	4.1e-45	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	2 cut(s)	4, 889
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	1148
AciI	CCGC	1 cut(s)	1164
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	130, 158
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	3 cut(s)	277, 831, 1131
AfiI	CCNNNNNNNGG	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	310, 466, 942
AjnI	CCWGG	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	922, 954
Alw21I	GWGCWC	2 cut(s)	94, 1105
Alw26I	GTCTC	1 cut(s)	740
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	130, 158
AoxI	GGCC	1 cut(s)	662
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	7 cut(s)	140, 239, 326, 596, 797, 800, 881
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	1038, 1070
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	1148
BaeGI	GKGCMC	2 cut(s)	94, 399
BanI	GGYRCC	2 cut(s)	4, 889
BanII	GRGCYC	1 cut(s)	1105
Bbv12I	GWGCWC	2 cut(s)	94, 1105
BbvI	GCAGC	7 cut(s)	127, 251, 338, 583, 784, 787, 868
BccI	CCATC	5 cut(s)	175, 449, 464, 673, 785
BceAI	ACGGC	2 cut(s)	514, 1052
BciT130I	CCWGG	1 cut(s)	547
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	5 cut(s)	36, 231, 695, 780, 812
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	7 cut(s)	141, 240, 327, 597, 798, 801, 882
BlsI	GCNGC	7 cut(s)	142, 241, 328, 598, 799, 802, 883
BmcAI	AGTACT	1 cut(s)	1131
Bme1390I	CCNGG	1 cut(s)	547
BmiI	GGNNCC	4 cut(s)	6, 225, 891, 1066
BmrFI	CCNGG	1 cut(s)	547
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	6 cut(s)	308, 345, 357, 595, 868, 1199
BmuI	ACTGGG	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	885
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	4 cut(s)	72, 546, 1027, 1057
BsaWI	WCCGGW	1 cut(s)	749
BsaXI	ACNNNNNCTCC	7 cut(s)	744, 774, 813, 843, 895, 925, 1199
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse1I	ACTGG	3 cut(s)	340, 635, 735
Bse3DI	GCAATG	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	4 cut(s)	72, 546, 1027, 1057
BseGI	GGATG	5 cut(s)	167, 336, 487, 691, 1081
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	2 cut(s)	742, 899
BseNI	ACTGG	3 cut(s)	340, 635, 735
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	2 cut(s)	94, 399
BseXI	GCAGC	7 cut(s)	127, 251, 338, 583, 784, 787, 868
BseYI	CCCAGC	1 cut(s)	1039
BsgI	GTGCAG	2 cut(s)	39, 270
Bsh1236I	CGCG	1 cut(s)	1148
BshFI	GGCC	1 cut(s)	664
BshNI	GGYRCC	2 cut(s)	4, 889
BsiHKAI	GWGCWC	2 cut(s)	94, 1105
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	740
BsmFI	GGGAC	1 cut(s)	1092
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	664
Bso31I	GGTCTC	1 cut(s)	740
Bsp1286I	GDGCHC	3 cut(s)	94, 399, 1105
Bsp143I	GATC	4 cut(s)	122, 163, 270, 529
Bsp19I	CCATGG	2 cut(s)	72, 1057
BspACI	CCGC	1 cut(s)	1164
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	2 cut(s)	741, 898
BspFNI	CGCG	1 cut(s)	1148
BspLI	GGNNCC	4 cut(s)	6, 225, 891, 1066
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	130, 158
BspQI	GCTCTTC	1 cut(s)	1136
BspT107I	GGYRCC	2 cut(s)	4, 889
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	3 cut(s)	340, 635, 735
BssECI	CCNNGG	4 cut(s)	72, 546, 1027, 1057
BssMI	GATC	4 cut(s)	122, 163, 270, 529
BssT1I	CCWWGG	3 cut(s)	72, 1027, 1057
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	2 cut(s)	283, 1178
Bst6I	CTCTTC	1 cut(s)	1136
BstC8I	GCNNGC	4 cut(s)	222, 324, 769, 949
BstDEI	CTNAG	4 cut(s)	203, 728, 885, 952
BstDSI	CCRYGG	2 cut(s)	72, 1057
BstF5I	GGATG	5 cut(s)	167, 336, 487, 691, 1081
BstFNI	CGCG	1 cut(s)	1148
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	4 cut(s)	125, 166, 273, 532
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	4 cut(s)	122, 163, 270, 529
BstNI	CCWGG	1 cut(s)	547
BstNSI	RCATGY	2 cut(s)	18, 388
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	2 cut(s)	94, 399
BstUI	CGCG	1 cut(s)	1148
BstV1I	GCAGC	7 cut(s)	127, 251, 338, 583, 784, 787, 868
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	664
BtgI	CCRYGG	2 cut(s)	72, 1057
BtsCI	GGATG	5 cut(s)	167, 336, 487, 691, 1081
BtsI	GCAGTG	1 cut(s)	1102
BtsIMutI	CAGTG	4 cut(s)	273, 279, 546, 1102
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	4 cut(s)	222, 324, 769, 949
CfoI	GCGC	1 cut(s)	1148
Csp6I	GTAC	3 cut(s)	276, 830, 1130
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	8 cut(s)	15, 73, 319, 385, 440, 502, 621, 1058
CviQI	GTAC	3 cut(s)	276, 830, 1130
DdeI	CTNAG	4 cut(s)	203, 728, 885, 952
DpnI	GATC	4 cut(s)	124, 165, 272, 531
DpnII	GATC	4 cut(s)	122, 163, 270, 529
Eam1104I	CTCTTC	1 cut(s)	1136
EarI	CTCTTC	1 cut(s)	1136
Ecl136II	GAGCTC	1 cut(s)	1103
Eco130I	CCWWGG	3 cut(s)	72, 1027, 1057
Eco24I	GRGCYC	1 cut(s)	1105
Eco31I	GGTCTC	1 cut(s)	740
Eco53kI	GAGCTC	1 cut(s)	1103
EcoICRI	GAGCTC	1 cut(s)	1103
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	3 cut(s)	72, 1027, 1057
EcoT38I	GRGCYC	1 cut(s)	1105
ErhI	CCWWGG	3 cut(s)	72, 1027, 1057
FaeI	CATG	8 cut(s)	18, 76, 322, 388, 443, 505, 624, 1061
FaqI	GGGAC	1 cut(s)	1092
FatI	CATG	8 cut(s)	14, 72, 318, 384, 439, 501, 620, 1057
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	7 cut(s)	141, 240, 327, 597, 798, 801, 882
FokI	GGATG	5 cut(s)	154, 323, 494, 698, 1068
FriOI	GRGCYC	1 cut(s)	1105
Fsp4HI	GCNGC	7 cut(s)	141, 240, 327, 597, 798, 801, 882
FspBI	CTAG	5 cut(s)	36, 231, 695, 780, 812
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	7 cut(s)	141, 240, 327, 597, 798, 801, 882
GsaI	CCCAGC	1 cut(s)	1043
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	1 cut(s)	750
HhaI	GCGC	1 cut(s)	1148
Hin1II	CATG	8 cut(s)	18, 76, 322, 388, 443, 505, 624, 1061
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HincII	GTYRAC	2 cut(s)	286, 679
HindII	GTYRAC	2 cut(s)	286, 679
HindIII	AAGCTT	3 cut(s)	116, 836, 957
HinfI	GANTC	4 cut(s)	23, 443, 507, 870
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	750
Hpy166II	GTNNAC	5 cut(s)	46, 92, 286, 487, 679
Hpy188I	TCNGA	2 cut(s)	576, 731
Hpy188III	TCNNGA	3 cut(s)	429, 648, 1205
Hpy8I	GTNNAC	5 cut(s)	46, 92, 286, 487, 679
HpyAV	CCTTC	6 cut(s)	415, 648, 654, 683, 820, 924
HpyCH4III	ACNGT	2 cut(s)	283, 1178
HpyCH4IV	ACGT	1 cut(s)	198
HpyF3I	CTNAG	4 cut(s)	203, 728, 885, 952
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	8 cut(s)	18, 76, 322, 388, 443, 505, 624, 1061
HspAI	GCGC	1 cut(s)	1146
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	122, 163, 270, 529
LguI	GCTCTTC	1 cut(s)	1136
LmnI	GCTCC	7 cut(s)	229, 553, 794, 916, 1064, 1100, 1207
Lsp1109I	GCAGC	7 cut(s)	127, 251, 338, 583, 784, 787, 868
LweI	GCATC	6 cut(s)	308, 345, 357, 595, 868, 1199
MaeI	CTAG	5 cut(s)	36, 231, 695, 780, 812
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	541, 760, 1114
MalI	GATC	4 cut(s)	124, 165, 272, 531
MboI	GATC	4 cut(s)	122, 163, 270, 529
MboII	GAAGA	3 cut(s)	181, 191, 1153
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	3 cut(s)	94, 399, 1105
MluCI	AATT	7 cut(s)	211, 518, 627, 672, 716, 896, 924
MlyI	GAGTC	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	9 cut(s)	32, 130, 544, 634, 644, 714, 746, 1095, 1175
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	147, 285, 741, 1050
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	547
MvnI	CGCG	1 cut(s)	1148
NcoI	CCATGG	2 cut(s)	72, 1057
NdeII	GATC	4 cut(s)	122, 163, 270, 529
NlaIII	CATG	8 cut(s)	18, 76, 322, 388, 443, 505, 624, 1061
NlaIV	GGNNCC	4 cut(s)	6, 225, 891, 1066
NmuCI	GTSAC	2 cut(s)	541, 1114
NspI	RCATGY	2 cut(s)	18, 388
PciSI	GCTCTTC	1 cut(s)	1136
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	3 cut(s)	23, 443, 870
PkrI	GCNGC	7 cut(s)	142, 241, 328, 598, 799, 802, 883
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	1105
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	1039
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	4 cut(s)	6, 225, 891, 1066
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	3 cut(s)	277, 831, 1131
RsaNI	GTAC	3 cut(s)	276, 830, 1130
RseI	CAYNNNNRTG	1 cut(s)	619
SacI	GAGCTC	1 cut(s)	1105
SapI	GCTCTTC	1 cut(s)	1136
SaqAI	TTAA	4 cut(s)	147, 285, 741, 1050
SatI	GCNGC	7 cut(s)	141, 240, 327, 597, 798, 801, 882
Sau3AI	GATC	4 cut(s)	122, 163, 270, 529
ScaI	AGTACT	1 cut(s)	1131
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	3 cut(s)	94, 399, 1105
SfaNI	GCATC	6 cut(s)	308, 345, 357, 595, 868, 1199
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	619
Sse9I	AATT	7 cut(s)	211, 518, 627, 672, 716, 896, 924
SsiI	CCGC	1 cut(s)	1164
SspMI	CTAG	5 cut(s)	36, 231, 695, 780, 812
SstI	GAGCTC	1 cut(s)	1105
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	3 cut(s)	72, 1027, 1057
TaaI	ACNGT	2 cut(s)	283, 1178
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	26, 430, 969
TasI	AATT	7 cut(s)	211, 518, 627, 672, 716, 896, 924
TatI	WGTACW	1 cut(s)	1129
TfiI	GAWTC	3 cut(s)	23, 443, 870
Tru1I	TTAA	4 cut(s)	147, 285, 741, 1050
Tru9I	TTAA	4 cut(s)	147, 285, 741, 1050
TscAI	CASTG	4 cut(s)	273, 286, 546, 1102
TseFI	GTSAC	2 cut(s)	541, 1114
TseI	GCWGC	7 cut(s)	140, 239, 326, 596, 797, 800, 881
Tsp45I	GTSAC	2 cut(s)	541, 1114
TspDTI	ATGAA	5 cut(s)	87, 609, 702, 993, 1002
TspRI	CASTG	4 cut(s)	273, 286, 546, 1102
VneI	GTGCAC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	2 cut(s)	18, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	5 cut(s)	36, 231, 695, 780, 812
ZrmI	AGTACT	1 cut(s)	1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.