Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Reverse (-)

72660532 .. 72664181

Gene Structure 3650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCACCAGTCGCAGCAGAAGCATGTGCAGATTCGATTAGTCCAAGAGGTGTTTACATCGTTGGTGTTGCACGAACACCCATGGGTGCATTTCTCGGTGCACTTTCATCTTTACCTGCCACCAAGCTAGGATCTATAGCTATTGAGGCTGCTCTTAAAAGAGCAAATGTTGATCCATCCCTGGTAGAAGAAGTTTTCTTCGGCAACGTTCTTAGTGCAAATTTGGGGCAGGCTCCTGCTAGACAAGCAGCATTGGGTGCAGGACTATCTCATTCAGTGGTCTGTACCACTGTTAACAAAGTTTGTGCATCAGGGTTGAAAGCTACTATGCTCGCAGCACAAAGCATCCAGTTGGGCATCAATGATGTTGTTGTTGCTGGTGGTATGGAAAGCATGTCTAATGTGCCCAAGTATCTTGCAGAAGCAAGGAAGGGATCTCGACTTGGACATGATTCTCTTGTTGATGGAATGCTGAAAGACGGTTTGTGGGATGTCTATAACGATTATGGCATGGGAGTCTGTGCTGAATTATGTGCTGATCAGCATTCAGTGTCTAGGGAGGAACAGGATAACTTTGCTGTTCAGAGCTTTGAGCGTGGTATTGCTGCCAAAGACACTGGTGCCTTTTCATGGGAAATTGTTCCAGTTGAAGTTTCTGGAGGAAGGGGAAGACCATCAACTATTGTTGACAAGGATGAAGGTCTAGGAAAGTTTGACGCTGCCAAATTGAGGAAGCTCCGACCAAGTTTTAAGGAGACTGGAGGTTCTGTTACTGCTGGCAATGCTTCTAGCATAAGTGATGGAGCTGCTGCATTAGTTCTAGTGAGTGGAGAGAAGGTACTAAAGCTTGGGCTACAAGTGATAGCAAAGATCAGTGGATTTGCTGATGCTGCTCAGGCACCAGAATTATTTACAACAGCTCCTTCCCTTGCGATTCCAAAAGCCATTTCAAACGCTGGCTTAGAAGCTTCTCAAATCGACTTTTACGAAATTAACGAAGCCTTTGCTGTCGTGGCTCTTGCAAACCAGAAAATTCTTGGACTTGACCCAACAAAAGTTAATGTGCATGGTGGAGCCGTAGCATTGGGACATCCTCTTGGTTGCAGTGGAGCTCGTATCTTGGTCACCCTTTTAGGGGTACTGAAACAGAAGAGTGCGAAATATGGTGTTGGTGGTATTTGCAACGGTGGAGGTGGTGCATCTGCTCTTGTTCTAGAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

408

Amino Acids

41.65

Weight (kDa)

6.02

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	18 - 277	2.3e-93	Thiolase, N-terminal domain
Thiolase_C	PF02803	286 - 406	4e-45	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	3 cut(s)	4, 620, 898
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	3 cut(s)	139, 167, 442
AcsI	RAATTY	2 cut(s)	220, 1032
AfaI	GTAC	3 cut(s)	286, 840, 1140
AfiI	CCNNNNNNNGG	4 cut(s)	630, 729, 1134, 1135
AgsI	TTSAA	3 cut(s)	319, 650, 951
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
Alw21I	GWGCWC	2 cut(s)	103, 1114
Alw26I	GTCTC	1 cut(s)	749
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	3 cut(s)	139, 167, 442
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	9 cut(s)	14, 149, 248, 335, 605, 719, 806, 809, 890
ApoI	RAATTY	2 cut(s)	220, 1032
Asp700I	GAANNNNTTC	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	1117
BaeGI	GKGCMC	2 cut(s)	103, 408
BanI	GGYRCC	3 cut(s)	4, 620, 898
BanII	GRGCYC	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	103, 1114
BbvI	GCAGC	9 cut(s)	26, 136, 260, 347, 592, 706, 793, 796, 877
BccI	CCATC	4 cut(s)	184, 458, 682, 794
BceAI	ACGGC	1 cut(s)	1061
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	7 cut(s)	128, 240, 555, 704, 789, 821, 1214
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	9 cut(s)	15, 150, 249, 336, 606, 720, 807, 810, 891
BlsI	GCNGC	9 cut(s)	16, 151, 250, 337, 607, 721, 808, 811, 892
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	5 cut(s)	6, 234, 622, 900, 1075
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	5 cut(s)	317, 354, 366, 877, 1208
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	2 cut(s)	678, 780
Bpu10I	CCTNAGC	1 cut(s)	894
BsaJI	CCNNGG	2 cut(s)	81, 180
BsaXI	ACNNNNNCTCC	6 cut(s)	753, 783, 822, 852, 904, 934
Bsc4I	CCNNNNNNNGG	4 cut(s)	630, 729, 1134, 1135
Bse1I	ACTGG	5 cut(s)	8, 349, 622, 644, 763
Bse3DI	GCAATG	1 cut(s)	787
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	81, 180
BseGI	GGATG	5 cut(s)	176, 345, 496, 700, 1090
BseLI	CCNNNNNNNGG	4 cut(s)	630, 729, 1134, 1135
BseMI	GCAATG	1 cut(s)	787
BseMII	CTCAG	1 cut(s)	908
BseNI	ACTGG	5 cut(s)	8, 349, 622, 644, 763
BseSI	GKGCMC	2 cut(s)	103, 408
BseXI	GCAGC	9 cut(s)	26, 136, 260, 347, 592, 706, 793, 796, 877
BsgI	GTGCAG	2 cut(s)	48, 279
BshNI	GGYRCC	3 cut(s)	4, 620, 898
BsiHKAI	GWGCWC	2 cut(s)	103, 1114
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	4 cut(s)	630, 729, 1134, 1135
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	1101
BsmI	GAATGC	2 cut(s)	474, 544
Bsp1286I	GDGCHC	3 cut(s)	103, 408, 1114
Bsp143I	GATC	5 cut(s)	131, 172, 434, 538, 870
Bsp19I	CCATGG	1 cut(s)	81
BspCNI	CTCAG	1 cut(s)	907
BspLI	GGNNCC	5 cut(s)	6, 234, 622, 900, 1075
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	3 cut(s)	139, 167, 442
BspT107I	GGYRCC	3 cut(s)	4, 620, 898
BsrDI	GCAATG	1 cut(s)	787
BsrI	ACTGG	5 cut(s)	8, 349, 622, 644, 763
BssECI	CCNNGG	2 cut(s)	81, 180
BssMI	GATC	5 cut(s)	131, 172, 434, 538, 870
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	292, 482, 1187
Bst6I	CTCTTC	1 cut(s)	1145
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	231, 333, 778, 958
BstDEI	CTNAG	3 cut(s)	212, 894, 961
BstDSI	CCRYGG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	1123
BstF5I	GGATG	5 cut(s)	176, 345, 496, 700, 1090
BstKTI	GATC	5 cut(s)	134, 175, 437, 541, 873
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	5 cut(s)	131, 172, 434, 538, 870
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 146, 245, 257, 782, 890, 896, 1013
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	27, 397
BstPI	GGTNACC	1 cut(s)	1123
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	135
BstSLI	GKGCMC	2 cut(s)	103, 408
BstV1I	GCAGC	9 cut(s)	26, 136, 260, 347, 592, 706, 793, 796, 877
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	2 cut(s)	131, 434
BstYI	RGATCY	2 cut(s)	131, 434
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	176, 345, 496, 700, 1090
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	6 cut(s)	282, 288, 555, 615, 880, 1111
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	4 cut(s)	231, 333, 778, 958
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	285, 839, 1139
CviAII	CATG	7 cut(s)	24, 82, 394, 449, 511, 630, 1067
CviQI	GTAC	3 cut(s)	285, 839, 1139
DdeI	CTNAG	3 cut(s)	212, 894, 961
DpnI	GATC	5 cut(s)	133, 174, 436, 540, 872
DpnII	GATC	5 cut(s)	131, 172, 434, 538, 870
Eam1104I	CTCTTC	1 cut(s)	1145
EarI	CTCTTC	1 cut(s)	1145
Ecl136II	GAGCTC	1 cut(s)	1112
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	1114
Eco53kI	GAGCTC	1 cut(s)	1112
Eco91I	GGTNACC	1 cut(s)	1123
EcoICRI	GAGCTC	1 cut(s)	1112
EcoO65I	GGTNACC	1 cut(s)	1123
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	1114
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	7 cut(s)	27, 85, 397, 452, 514, 633, 1070
FaqI	GGGAC	1 cut(s)	1101
FatI	CATG	7 cut(s)	23, 81, 393, 448, 510, 629, 1066
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	9 cut(s)	15, 150, 249, 336, 606, 720, 807, 810, 891
FokI	GGATG	5 cut(s)	163, 332, 503, 707, 1077
FriOI	GRGCYC	1 cut(s)	1114
Fsp4HI	GCNGC	9 cut(s)	15, 150, 249, 336, 606, 720, 807, 810, 891
FspBI	CTAG	7 cut(s)	128, 240, 555, 704, 789, 821, 1214
GluI	GCNGC	9 cut(s)	15, 150, 249, 336, 606, 720, 807, 810, 891
GsuI	CTGGAG	2 cut(s)	678, 780
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	7 cut(s)	27, 85, 397, 452, 514, 633, 1070
HincII	GTYRAC	2 cut(s)	295, 688
HindII	GTYRAC	2 cut(s)	295, 688
HindIII	AAGCTT	2 cut(s)	845, 966
HinfI	GANTC	4 cut(s)	32, 452, 516, 934
HpaI	GTTAAC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	1117
Hpy166II	GTNNAC	4 cut(s)	55, 101, 295, 688
Hpy188I	TCNGA	2 cut(s)	585, 740
Hpy188III	TCNNGA	3 cut(s)	438, 657, 1214
Hpy8I	GTNNAC	4 cut(s)	55, 101, 295, 688
HpyAV	CCTTC	5 cut(s)	424, 657, 692, 829, 933
HpyCH4III	ACNGT	3 cut(s)	292, 482, 1187
HpyCH4IV	ACGT	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 146, 245, 257, 782, 890, 896, 1013
HpyF3I	CTNAG	3 cut(s)	212, 894, 961
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	7 cut(s)	27, 85, 397, 452, 514, 633, 1070
Ksp22I	TGATCA	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	131, 172, 434, 538, 870
LmnI	GCTCC	6 cut(s)	238, 741, 803, 925, 1073, 1109
Lsp1109I	GCAGC	9 cut(s)	26, 136, 260, 347, 592, 706, 793, 796, 877
LweI	GCATC	5 cut(s)	317, 354, 366, 877, 1208
MaeI	CTAG	7 cut(s)	128, 240, 555, 704, 789, 821, 1214
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	769, 1123
MalI	GATC	5 cut(s)	133, 174, 436, 540, 872
MboI	GATC	5 cut(s)	131, 172, 434, 538, 870
MboII	GAAGA	4 cut(s)	190, 200, 681, 1162
MflI	RGATCY	2 cut(s)	131, 434
MhlI	GDGCHC	3 cut(s)	103, 408, 1114
MluCI	AATT	7 cut(s)	220, 527, 636, 725, 905, 990, 1032
MlyI	GAGTC	1 cut(s)	525
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	8 cut(s)	41, 139, 553, 653, 723, 755, 1104, 1184
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	5 cut(s)	156, 294, 750, 993, 1059
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	474, 544
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 146, 245, 257, 782, 890, 896, 1013
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	131, 172, 434, 538, 870
NlaIII	CATG	7 cut(s)	27, 85, 397, 452, 514, 633, 1070
NlaIV	GGNNCC	5 cut(s)	6, 234, 622, 900, 1075
NmuCI	GTSAC	1 cut(s)	1123
NspI	RCATGY	2 cut(s)	27, 397
PcsI	WCGNNNNNNNCGW	2 cut(s)	984, 993
PctI	GAATGC	2 cut(s)	474, 544
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	32, 452, 934
PkrI	GCNGC	9 cut(s)	16, 151, 250, 337, 607, 721, 808, 811, 892
PleI	GAGTC	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	1114
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	1123
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	5 cut(s)	6, 234, 622, 900, 1075
PsuI	RGATCY	2 cut(s)	131, 434
RsaI	GTAC	3 cut(s)	286, 840, 1140
RsaNI	GTAC	3 cut(s)	285, 839, 1139
SacI	GAGCTC	1 cut(s)	1114
SaqAI	TTAA	5 cut(s)	156, 294, 750, 993, 1059
SatI	GCNGC	9 cut(s)	15, 150, 249, 336, 606, 720, 807, 810, 891
Sau3AI	GATC	5 cut(s)	131, 172, 434, 538, 870
SchI	GAGTC	1 cut(s)	525
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	103, 408, 1114
SfaNI	GCATC	5 cut(s)	317, 354, 366, 877, 1208
SfcI	CTRYAG	1 cut(s)	135
Sse9I	AATT	7 cut(s)	220, 527, 636, 725, 905, 990, 1032
SspMI	CTAG	7 cut(s)	128, 240, 555, 704, 789, 821, 1214
SstI	GAGCTC	1 cut(s)	1114
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	292, 482, 1187
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	35, 439, 978
TasI	AATT	7 cut(s)	220, 527, 636, 725, 905, 990, 1032
TfiI	GAWTC	3 cut(s)	32, 452, 934
Tru1I	TTAA	5 cut(s)	156, 294, 750, 993, 1059
Tru9I	TTAA	5 cut(s)	156, 294, 750, 993, 1059
TscAI	CASTG	6 cut(s)	282, 295, 555, 622, 880, 1111
TseFI	GTSAC	1 cut(s)	1123
TseI	GCWGC	9 cut(s)	14, 149, 248, 335, 605, 719, 806, 809, 890
Tsp45I	GTSAC	1 cut(s)	1123
TspDTI	ATGAA	3 cut(s)	96, 618, 711
TspRI	CASTG	6 cut(s)	282, 295, 555, 622, 880, 1111
VneI	GTGCAC	1 cut(s)	99
XapI	RAATTY	2 cut(s)	220, 1032
XbaI	TCTAGA	1 cut(s)	1213
XceI	RCATGY	2 cut(s)	27, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	7 cut(s)	128, 240, 555, 704, 789, 821, 1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.