Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Forward (+)

9927093 .. 9931596

Gene Structure 4504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1128400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTGCTCGGCAGCTCGTGAGCTCTCTCCCCTACAATATAATAACAGCAGCCGTGCTTTTGCATTTGCAGCAGATCAGCACCAATTCAGAGACTTGCAAGTCAGTCTTCTTCTTCCTCCCACCGACTTCCCGAACCCAAAAGATTTCCATTTGCTTGTAACAATGGCTCCAGTTTCTGCAGAAGCATGTTCCGATTCAATCAACCCTAGAGATGTTTGCATCGTTGGTATTGCAAGAACACCAATGGGTGCATTTCTTGGTGCACTTTCATCTGTACCAGCCACCAAGCTTGGGTCTATAGCTATTGAGGCTGCTCTTAAGAGGGCAAATGTTGATCCAGCACTTGTAGAAGAAGTTTTCTTTGGCAATGTTCTCAGTGCAAACTTGGGGCAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATCCCCAATTCAGTAATCTGTACCACTGTTAACAAAGTCTGCGCATCAGGGTTGAAAGCTACTATGCTCGCAGCACAAAGCATCCAGTTGGGCATCAATGACGTTGTTGTGGCTGGTGGCATGGAAAGCATGTCAAATGTGCCCAAGTATCTTGCCGAAGCAAGGAAAGGATCTCGACTTGGACATGATTCTCTTGTTGATGGAATGCTGAAGGATGGTCTGTGGGATGTCTATAATGATTATGGCATGGGAGTGTGCGCTGAATTATGTGCTGATCAGCATTCAGTTACAAGGGAGGACCAGGATAACTTTGCTGTTCAGAGCTTCGAGCGTGGTATTGCTGCCCAAGGCTGTGATGCCTTTTCATGGGAGATTGTTCCAGTAGAAGTTTCTGGAGGAAGGGGAAGACCATCCACCATTGTTGATAAAGATGAAGGTCTAGGCAAGTTTGACGCTGCCAAATTGCGGAAGCTCAGACCAAGTTTTAAGGAGAGTGGAGGTTCTGTGACTGCCGGAAATGCTTCTAGTATCAGTGATGGTGCTGCAGCATTAGTTTTAGCAAGTGGGGAGAAGGTATTAAAGCTTGGGCTACAAGTGATCGCCAAGATCAGTGGATACGCTGATGCTGCTCAGGCACCAGAACTATTTACAACAGCTCCGGCTCTTGCAATTCCAAAAGCTATTTCAAATGCTGGCTTGGAAGCTTCTCAAATTGACTTCTATGAAATTAATGAAGCCTTTGCCGTTGTGGCTCTTGCAAATCAGAAACTTCTTGGACTTAACCCAGAAAAAGTTAATGTGCATGGTGGAGCTGTAGCGTTGGGACACCCTCTTGGTTGCAGTGGAGCTCGTATCTTGGTCACTCTTTTAGGGGTGCTCAAGCAGAAGAACGGGAAATACGGTGCTGCTGGTATTTGCAATGGCGGCGGAGGTGCATCTGCTCTTGTTTTGGAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

463

Amino Acids

47.78

Weight (kDa)

5.63

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	72 - 330	1.9e-91	Thiolase, N-terminal domain
Thiolase_C	PF02803	340 - 460	1.6e-45	Thiolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
Acc16I	TGCGCA	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	1060
AciI	CCGC	3 cut(s)	892, 1350, 1353
AclWI	GGATC	2 cut(s)	329, 604
AcuI	CTGAAG	1 cut(s)	656
AfaI	GTAC	2 cut(s)	276, 448
AfiI	CCNNNNNNNGG	4 cut(s)	291, 588, 792, 891
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	198, 481, 1113
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	4 cut(s)	345, 377, 1093, 1125
Alw21I	GWGCWC	5 cut(s)	8, 24, 265, 1276, 1305
Alw26I	GTCTC	1 cut(s)	84
Alw44I	GTGCAC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	329, 604
AlwNI	CAGNNNCTG	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	261
AseI	ATTAAT	1 cut(s)	1155
Asp700I	GAANNNNTTC	1 cut(s)	946
AspLEI	GCGC	2 cut(s)	470, 686
AspS9I	GGNCC	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	724
BaeGI	GKGCMC	2 cut(s)	265, 570
BanI	GGYRCC	1 cut(s)	1060
BanII	GRGCYC	2 cut(s)	24, 1276
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	98, 838
Bbv12I	GWGCWC	5 cut(s)	8, 24, 265, 1276, 1305
BccI	CCATC	4 cut(s)	620, 635, 844, 956
BceAI	ACGGC	2 cut(s)	36, 1154
BciT130I	CCWGG	1 cut(s)	728
BciVI	GTATCC	1 cut(s)	1034
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	4 cut(s)	207, 402, 866, 951
BfmI	CTRYAG	4 cut(s)	177, 297, 969, 1239
BfrI	CTTAAG	1 cut(s)	317
BfuI	GTATCC	1 cut(s)	1034
BglI	GCCNNNNNGGC	1 cut(s)	1175
Bme1390I	CCNGG	1 cut(s)	728
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	3 cut(s)	168, 396, 1062
BmrFI	CCNGG	1 cut(s)	728
BmsI	GCATC	7 cut(s)	228, 479, 516, 528, 772, 1039, 1370
BpiI	GAAGAC	2 cut(s)	98, 838
BpmI	CTGGAG	2 cut(s)	153, 840
Bpu10I	CCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	1289
BsaJI	CCNNGG	1 cut(s)	772
BsaXI	ACNNNNNCTCC	7 cut(s)	151, 181, 915, 945, 1066, 1096, 1370
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 588, 792, 891
Bse1I	ACTGG	3 cut(s)	170, 511, 806
Bse3DI	GCAATG	2 cut(s)	373, 1351
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	4 cut(s)	507, 646, 658, 836
BseLI	CCNNNNNNNGG	4 cut(s)	291, 588, 792, 891
BseMI	GCAATG	2 cut(s)	373, 1351
BseMII	CTCAG	3 cut(s)	388, 913, 1070
BseNI	ACTGG	3 cut(s)	170, 511, 806
BseSI	GKGCMC	2 cut(s)	265, 570
BsgI	GTGCAG	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	1060
BsiHKAI	GWGCWC	5 cut(s)	8, 24, 265, 1276, 1305
BsiSI	CCGG	2 cut(s)	939, 1085
BslFI	GGGAC	1 cut(s)	1263
BslI	CCNNNNNNNGG	4 cut(s)	291, 588, 792, 891
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	1263
BsmI	GAATGC	2 cut(s)	636, 706
Bsp1286I	GDGCHC	6 cut(s)	8, 24, 265, 570, 1276, 1305
Bsp143I	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
BspACI	CCGC	3 cut(s)	892, 1350, 1353
BspCNI	CTCAG	3 cut(s)	387, 912, 1069
BspLI	GGNNCC	3 cut(s)	168, 396, 1062
BspMAI	CTGCAG	2 cut(s)	181, 973
BspPI	GGATC	2 cut(s)	329, 604
BspT107I	GGYRCC	1 cut(s)	1060
BspTI	CTTAAG	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	373, 1351
BsrI	ACTGG	3 cut(s)	170, 511, 806
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	772
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	2 cut(s)	454, 1328
BstAFI	CTTAAG	1 cut(s)	317
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	393, 495, 1120
BstDEI	CTNAG	3 cut(s)	374, 899, 1056
BstF5I	GGATG	4 cut(s)	507, 646, 658, 836
BstHHI	GCGC	2 cut(s)	470, 686
BstKTI	GATC	6 cut(s)	76, 337, 599, 703, 1026, 1035
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	2 cut(s)	189, 559
BstSCI	CCNGG	1 cut(s)	726
BstSFI	CTRYAG	4 cut(s)	177, 297, 969, 1239
BstSLI	GKGCMC	2 cut(s)	265, 570
BstV2I	GAAGAC	2 cut(s)	98, 838
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	1034
BtsCI	GGATG	4 cut(s)	507, 646, 658, 836
BtsI	GCAGTG	1 cut(s)	1273
BtsIMutI	CAGTG	5 cut(s)	382, 450, 964, 1042, 1273
Cac8I	GCNNGC	3 cut(s)	393, 495, 1120
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	2 cut(s)	470, 686
Cfr13I	GGNCC	1 cut(s)	724
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	275, 447
CspCI	CAANNNNNGTGG	6 cut(s)	271, 306, 829, 864, 1018, 1053
CviAII	CATG	7 cut(s)	186, 547, 556, 611, 673, 792, 1229
CviQI	GTAC	2 cut(s)	275, 447
DdeI	CTNAG	3 cut(s)	374, 899, 1056
DpnI	GATC	6 cut(s)	75, 336, 598, 702, 1025, 1034
DpnII	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	1368
Ecl136II	GAGCTC	2 cut(s)	22, 1274
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	24, 1276
Eco47I	GGWCC	1 cut(s)	724
Eco53kI	GAGCTC	2 cut(s)	22, 1274
Eco57I	CTGAAG	1 cut(s)	656
EcoICRI	GAGCTC	2 cut(s)	22, 1274
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	24, 1276
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	7 cut(s)	189, 550, 559, 614, 676, 795, 1232
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	1263
FatI	CATG	7 cut(s)	185, 546, 555, 610, 672, 791, 1228
FbaI	TGATCA	1 cut(s)	700
FokI	GGATG	4 cut(s)	494, 653, 665, 823
FriOI	GRGCYC	2 cut(s)	24, 1276
FspBI	CTAG	4 cut(s)	207, 402, 866, 951
FspI	TGCGCA	1 cut(s)	469
GlaI	GCGC	2 cut(s)	469, 685
GsuI	CTGGAG	2 cut(s)	153, 840
HapII	CCGG	2 cut(s)	939, 1085
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	2 cut(s)	470, 686
Hin1II	CATG	7 cut(s)	189, 550, 559, 614, 676, 795, 1232
Hin6I	GCGC	2 cut(s)	468, 684
HinP1I	GCGC	2 cut(s)	468, 684
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	3 cut(s)	287, 1007, 1128
HinfI	GANTC	3 cut(s)	194, 426, 614
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	939, 1085
Hpy166II	GTNNAC	2 cut(s)	263, 457
Hpy188I	TCNGA	5 cut(s)	89, 193, 747, 902, 1191
Hpy188III	TCNNGA	4 cut(s)	17, 130, 600, 819
Hpy8I	GTNNAC	2 cut(s)	263, 457
HpyAV	CCTTC	4 cut(s)	631, 819, 854, 991
HpyCH4III	ACNGT	2 cut(s)	454, 1328
HpyCH4IV	ACGT	1 cut(s)	528
HpyF3I	CTNAG	3 cut(s)	374, 899, 1056
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	7 cut(s)	189, 550, 559, 614, 676, 795, 1232
HspAI	GCGC	2 cut(s)	468, 684
Ksp22I	TGATCA	1 cut(s)	700
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
LmnI	GCTCC	6 cut(s)	172, 400, 1087, 1235, 1271, 1378
LweI	GCATC	7 cut(s)	228, 479, 516, 528, 772, 1039, 1370
MaeI	CTAG	4 cut(s)	207, 402, 866, 951
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	4 cut(s)	157, 712, 931, 1285
MalI	GATC	6 cut(s)	75, 336, 598, 702, 1025, 1034
MboI	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
MboII	GAAGA	6 cut(s)	98, 101, 104, 362, 843, 1324
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	6 cut(s)	8, 24, 265, 570, 1276, 1305
MluCI	AATT	7 cut(s)	83, 433, 689, 887, 1095, 1137, 1152
MnlI	CCTC	8 cut(s)	126, 301, 315, 715, 815, 917, 1266, 1349
MroXI	GAANNNNTTC	1 cut(s)	946
MseI	TTAA	7 cut(s)	318, 456, 912, 1004, 1155, 1206, 1221
MslI	CAYNNNNRTG	1 cut(s)	677
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	2 cut(s)	939, 1085
MspR9I	CCNGG	1 cut(s)	728
Mva1269I	GAATGC	2 cut(s)	636, 706
MvaI	CCWGG	1 cut(s)	728
NdeII	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
NlaIII	CATG	7 cut(s)	189, 550, 559, 614, 676, 795, 1232
NlaIV	GGNNCC	3 cut(s)	168, 396, 1062
NmuCI	GTSAC	2 cut(s)	931, 1285
NsbI	TGCGCA	1 cut(s)	469
NspI	RCATGY	2 cut(s)	189, 559
PctI	GAATGC	2 cut(s)	636, 706
PdmI	GAANNNNTTC	1 cut(s)	946
PfeI	GAWTC	3 cut(s)	194, 426, 614
PshBI	ATTAAT	1 cut(s)	1155
Psp124BI	GAGCTC	2 cut(s)	24, 1276
Psp6I	CCWGG	1 cut(s)	726
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	3 cut(s)	168, 396, 1062
PspPI	GGNCC	1 cut(s)	724
PsrI	GAACNNNNNNTAC	2 cut(s)	1307, 1339
PstI	CTGCAG	2 cut(s)	181, 973
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	276, 448
RsaNI	GTAC	2 cut(s)	275, 447
RseI	CAYNNNNRTG	1 cut(s)	677
SacI	GAGCTC	2 cut(s)	24, 1276
SaqAI	TTAA	7 cut(s)	318, 456, 912, 1004, 1155, 1206, 1221
Sau3AI	GATC	6 cut(s)	73, 334, 596, 700, 1023, 1032
Sau96I	GGNCC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	728
SduI	GDGCHC	6 cut(s)	8, 24, 265, 570, 1276, 1305
SfaNI	GCATC	7 cut(s)	228, 479, 516, 528, 772, 1039, 1370
SfcI	CTRYAG	4 cut(s)	177, 297, 969, 1239
SinI	GGWCC	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	2 cut(s)	317, 1304
SmoI	CTYRAG	2 cut(s)	317, 1304
Sse9I	AATT	7 cut(s)	83, 433, 689, 887, 1095, 1137, 1152
SsiI	CCGC	3 cut(s)	892, 1350, 1353
SspMI	CTAG	4 cut(s)	207, 402, 866, 951
SstI	GAGCTC	2 cut(s)	24, 1276
StyD4I	CCNGG	1 cut(s)	726
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	2 cut(s)	454, 1328
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	601, 753
TasI	AATT	7 cut(s)	83, 433, 689, 887, 1095, 1137, 1152
TauI	GCSGC	1 cut(s)	1353
TfiI	GAWTC	3 cut(s)	194, 426, 614
Tru1I	TTAA	7 cut(s)	318, 456, 912, 1004, 1155, 1206, 1221
Tru9I	TTAA	7 cut(s)	318, 456, 912, 1004, 1155, 1206, 1221
TscAI	CASTG	5 cut(s)	382, 457, 964, 1042, 1273
TseFI	GTSAC	2 cut(s)	931, 1285
Tsp45I	GTSAC	2 cut(s)	931, 1285
TspDTI	ATGAA	5 cut(s)	258, 780, 873, 1164, 1173
TspRI	CASTG	5 cut(s)	382, 457, 964, 1042, 1273
Vha464I	CTTAAG	1 cut(s)	317
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	1155
XceI	RCATGY	2 cut(s)	189, 559
XmnI	GAANNNNTTC	1 cut(s)	946
XspI	CTAG	4 cut(s)	207, 402, 866, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.