Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012806

Physical Location & Seq

Genomic Coordinates Reverse (-)

20736521 .. 20741175

Gene Structure 4655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G196800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCTCCAGTAACAGCAGAAGCATGTTCTGATTCGATAAAGCCTAGAGATGTTTACATTGTTGGTGTTGCACGAACACCAATGGGTGCCTTTCTTGGTGCACTTTCATCTTTACCTGCCACCAAGCTTGGGTCGATAGCTATTGAGGCTGCTCTTAAAAGGGCCAATGTTGATCCATCACTTGTGGAAGAAGTTTTCTTCGGAAATGTTCTCAGTGCAAATCTGGGGCAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGATCTGTACCACTGTTAACAAAGTCTGTGCATCAGGGTTGAAAGCGACTATGCTCGCAGCACAAAGCATCCAGTTGGGCATTAATGATGTTGTTGTGGCTGGTGGCATGGAAAGCATGTCTAATGTGCCCAAGTATCTTGCAGAAGCGAGGAAGGGATCTCGACTTGGACATGATACTCTTGTTGATGGAATGCTGAAAGATGGTCTGTGGGATGTCTATAATGATTATGGCATGGGAGTGTGCGCTGAATTATGTGCTGATCAGCATGCAGTAACAAGGGAGGACCAGGATAACTTTGCTGTTCAGAGCTTCGAGCGTGGTATTGCTGCCCAAGGCCATGATGCCTTTTCATGGGAAATTGTTCCAGTTGAAGTTTCTGGAGGAAGGGGAAGACCATCAACAATTGTTGATAAAGATGAAGGTCTAGGAAAGTTTGATGCTGCCAAATTACGGAAGCTTCGACCAAGTTTTAAGGAGAGTGGAGGTTCTGTTACTGCTGGCAATGCTTCCAGTATAAGTGATGGTGCTGCAGCATTAGTTTTGGTGAGTGGAGAAAAGGTATTGAAGCTTGGGCTACAAGTGATAGCAAAGATCAGTGGATACGCTGATGCTGCTCAGGCACCAGAATTATTTACAACTGCTCCTGCTCTTGCGATTCCAAAAGCTATTTCAAATGCTGGCTTGGAAGCTTCTCAAATTGACTTTTACGAAATCAATGAAGCCTTTGCTGTTGTGGCTCTTGCAAATCAGAAACTGCTTGGACTTAACCCAGAAAAAGTTAATGTGCATGGTGGAGCTGTAGCATTGGGACATCCTCTAGGTTGCAGTGGAGCTCGTATCCTGGTCACCCTTTTAGGGGTACTGAAGCAGAAGAGTGGGAAATATGGTGCTGCCGGTATTTGCAATGGTGGAGGTGGTGCATCTGCCCTTGTTTTAGAGCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003985 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009062 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016042 GO:0016043 GO:0016049 GO:0016054 GO:0016125 GO:0016407 GO:0016408 GO:0016453 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0022414 GO:0030154 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0034440 GO:0040007 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046395 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055114 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0072329 GO:1901360 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00071 ko00072 ko00280 ko00310 ko00362 ko00380 ko00620 ko00630 ko00640 ko00650 ko00720 ko00900 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 ko02020 map00071 map00072 map00280 map00310 map00362 map00380 map00620 map00630 map00640 map00650 map00720 map00900 map01100 map01110 map01120 map01130 map01200 map01212 map02020

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

409

Amino Acids

41.81

Weight (kDa)

5.83

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48230 AT5G48230
fragaria_vesca	FvH4_6g40560 FvH4_6g40560 FvH4_6g40560
malus_domestica	MD09G1128400.v1.1 MD17G1117800.v1.1
prunus_persica	Prupe.3G196800_v2.0.a1 Prupe.3G196800_v2.0.a1
pyrus_communis	pycom09g05210 pycom17g10830
rosa_chinensis	RchiOBHm_Chr2g0155821
rosa_roxburghii	Rroxscaffold_2G00093460
rosa_rugosa	Rorug02G0450000
rosa_samantha	Rh2AG516400 Rh2CG501300 Rh2DG536400
rosa_wichuraiana	Rw2G042470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	2 cut(s)	86, 898
AclWI	GGATC	2 cut(s)	167, 442
AcuI	CTGAAG	1 cut(s)	1163
AfaI	GTAC	2 cut(s)	286, 1140
AfiI	CCNNNNNNNGG	5 cut(s)	129, 630, 729, 1134, 1135
AgsI	TTSAA	4 cut(s)	319, 650, 844, 951
AjnI	CCWGG	2 cut(s)	564, 1119
AjuI	GAANNNNNNNTTGG	2 cut(s)	931, 963
Alw21I	GWGCWC	2 cut(s)	103, 1114
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	167, 442
AlwNI	CAGNNNCTG	1 cut(s)	1033
AoxI	GGCC	2 cut(s)	162, 613
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	9 cut(s)	149, 248, 335, 605, 719, 806, 809, 890, 1169
AseI	ATTAAT	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	162, 562
AsuHPI	GGTGA	2 cut(s)	835, 1117
AvaII	GGWCC	1 cut(s)	562
BaeGI	GKGCMC	2 cut(s)	103, 408
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanI	GGYRCC	2 cut(s)	86, 898
BanII	GRGCYC	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	103, 1114
BbvI	GCAGC	9 cut(s)	136, 235, 347, 592, 706, 793, 821, 877, 1156
BccI	CCATC	5 cut(s)	184, 458, 473, 682, 794
BciT130I	CCWGG	2 cut(s)	566, 1121
BciVI	GTATCC	2 cut(s)	872, 1127
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	4 cut(s)	45, 240, 704, 1097
BfmI	CTRYAG	2 cut(s)	807, 1077
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	2 cut(s)	872, 1127
BisI	GCNGC	9 cut(s)	150, 249, 336, 606, 720, 807, 810, 891, 1170
BlsI	GCNGC	9 cut(s)	151, 250, 337, 607, 721, 808, 811, 892, 1171
Bme1390I	CCNGG	2 cut(s)	566, 1121
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	162, 562
BmiI	GGNNCC	4 cut(s)	6, 88, 234, 900
BmrFI	CCNGG	2 cut(s)	566, 1121
BmsI	GCATC	6 cut(s)	317, 354, 610, 706, 877, 1208
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	610
BsaXI	ACNNNNNCTCC	6 cut(s)	753, 783, 822, 852, 904, 934
Bsc4I	CCNNNNNNNGG	5 cut(s)	129, 630, 729, 1134, 1135
Bse118I	RCCGGY	1 cut(s)	1172
Bse1I	ACTGG	4 cut(s)	8, 349, 644, 789
Bse3DI	GCAATG	2 cut(s)	787, 1189
BseBI	CCWGG	2 cut(s)	566, 1121
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	3 cut(s)	345, 496, 1090
BseLI	CCNNNNNNNGG	5 cut(s)	129, 630, 729, 1134, 1135
BseMI	GCAATG	2 cut(s)	787, 1189
BseMII	CTCAG	2 cut(s)	226, 908
BseNI	ACTGG	4 cut(s)	8, 349, 644, 789
BseSI	GKGCMC	2 cut(s)	103, 408
BseXI	GCAGC	9 cut(s)	136, 235, 347, 592, 706, 793, 821, 877, 1156
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	164, 615
BshNI	GGYRCC	2 cut(s)	86, 898
BsiHKAI	GWGCWC	2 cut(s)	103, 1114
BsiSI	CCGG	1 cut(s)	1173
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	5 cut(s)	129, 630, 729, 1134, 1135
BsmFI	GGGAC	1 cut(s)	1101
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	164, 615
Bsp1286I	GDGCHC	3 cut(s)	103, 408, 1114
Bsp143I	GATC	5 cut(s)	172, 279, 434, 538, 870
BspANI	GGCC	2 cut(s)	164, 615
BspCNI	CTCAG	2 cut(s)	225, 907
BspLI	GGNNCC	4 cut(s)	6, 88, 234, 900
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	167, 442
BspT107I	GGYRCC	2 cut(s)	86, 898
BsrDI	GCAATG	2 cut(s)	787, 1189
BsrFI	RCCGGY	1 cut(s)	1172
BsrI	ACTGG	4 cut(s)	8, 349, 644, 789
BssAI	RCCGGY	1 cut(s)	1172
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	172, 279, 434, 538, 870
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	566, 1121
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	1145
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	5 cut(s)	231, 333, 546, 778, 958
BstDEI	CTNAG	2 cut(s)	212, 894
BstEII	GGTNACC	1 cut(s)	1123
BstF5I	GGATG	3 cut(s)	345, 496, 1090
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	5 cut(s)	175, 282, 437, 541, 873
BstMBI	GATC	5 cut(s)	172, 279, 434, 538, 870
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 245, 257, 390, 782, 890, 896, 1013
BstNI	CCWGG	2 cut(s)	566, 1121
BstNSI	RCATGY	3 cut(s)	27, 397, 548
BstPI	GGTNACC	1 cut(s)	1123
BstSCI	CCNGG	2 cut(s)	564, 1119
BstSFI	CTRYAG	2 cut(s)	807, 1077
BstSLI	GKGCMC	2 cut(s)	103, 408
BstV1I	GCAGC	9 cut(s)	136, 235, 347, 592, 706, 793, 821, 877, 1156
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuI	GTATCC	2 cut(s)	872, 1127
BsuRI	GGCC	2 cut(s)	164, 615
BtsCI	GGATG	3 cut(s)	345, 496, 1090
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	5 cut(s)	220, 282, 288, 880, 1111
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	5 cut(s)	231, 333, 546, 778, 958
CaiI	CAGNNNCTG	1 cut(s)	1033
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	1172
Cfr13I	GGNCC	2 cut(s)	162, 562
Csp6I	GTAC	2 cut(s)	285, 1139
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	9 cut(s)	24, 385, 394, 449, 511, 545, 617, 630, 1067
CviQI	GTAC	2 cut(s)	285, 1139
DdeI	CTNAG	2 cut(s)	212, 894
DpnI	GATC	5 cut(s)	174, 281, 436, 540, 872
DpnII	GATC	5 cut(s)	172, 279, 434, 538, 870
Eam1104I	CTCTTC	1 cut(s)	1145
EarI	CTCTTC	1 cut(s)	1145
Ecl136II	GAGCTC	1 cut(s)	1112
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	1114
Eco47I	GGWCC	1 cut(s)	562
Eco53kI	GAGCTC	1 cut(s)	1112
Eco57I	CTGAAG	1 cut(s)	1163
Eco91I	GGTNACC	1 cut(s)	1123
EcoICRI	GAGCTC	1 cut(s)	1112
EcoO65I	GGTNACC	1 cut(s)	1123
EcoRII	CCWGG	2 cut(s)	564, 1119
EcoT14I	CCWWGG	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	1114
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	9 cut(s)	27, 388, 397, 452, 514, 548, 620, 633, 1070
FaqI	GGGAC	1 cut(s)	1101
FatI	CATG	9 cut(s)	23, 384, 393, 448, 510, 544, 616, 629, 1066
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	9 cut(s)	150, 249, 336, 606, 720, 807, 810, 891, 1170
FokI	GGATG	3 cut(s)	332, 503, 1077
FriOI	GRGCYC	1 cut(s)	1114
Fsp4HI	GCNGC	9 cut(s)	150, 249, 336, 606, 720, 807, 810, 891, 1170
FspBI	CTAG	4 cut(s)	45, 240, 704, 1097
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	9 cut(s)	150, 249, 336, 606, 720, 807, 810, 891, 1170
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	164, 615
HapII	CCGG	1 cut(s)	1173
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	9 cut(s)	27, 388, 397, 452, 514, 548, 620, 633, 1070
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	4 cut(s)	125, 734, 845, 966
HinfI	GANTC	2 cut(s)	32, 934
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	1173
HphI	GGTGA	2 cut(s)	835, 1117
Hpy166II	GTNNAC	3 cut(s)	55, 101, 295
Hpy188I	TCNGA	4 cut(s)	31, 203, 585, 1029
Hpy188III	TCNNGA	2 cut(s)	438, 657
Hpy8I	GTNNAC	3 cut(s)	55, 101, 295
HpyAV	CCTTC	3 cut(s)	424, 657, 692
HpyCH4III	ACNGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 245, 257, 390, 782, 890, 896, 1013
HpyF3I	CTNAG	2 cut(s)	212, 894
Hsp92II	CATG	9 cut(s)	27, 388, 397, 452, 514, 548, 620, 633, 1070
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	172, 279, 434, 538, 870
LmnI	GCTCC	5 cut(s)	10, 238, 925, 1073, 1109
Lsp1109I	GCAGC	9 cut(s)	136, 235, 347, 592, 706, 793, 821, 877, 1156
LweI	GCATC	6 cut(s)	317, 354, 610, 706, 877, 1208
MaeI	CTAG	4 cut(s)	45, 240, 704, 1097
MaeIII	GTNAC	4 cut(s)	10, 550, 769, 1123
MalI	GATC	5 cut(s)	174, 281, 436, 540, 872
MboI	GATC	5 cut(s)	172, 279, 434, 538, 870
MboII	GAAGA	4 cut(s)	190, 200, 681, 1162
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	3 cut(s)	103, 408, 1114
MluCI	AATT	7 cut(s)	271, 527, 636, 681, 725, 905, 975
MnlI	CCTC	7 cut(s)	139, 420, 553, 653, 755, 1104, 1184
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	6 cut(s)	156, 294, 360, 750, 1044, 1059
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	1 cut(s)	1173
MspR9I	CCNGG	2 cut(s)	566, 1121
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	566, 1121
MwoI	GCNNNNNNNGC	8 cut(s)	146, 245, 257, 390, 782, 890, 896, 1013
NdeII	GATC	5 cut(s)	172, 279, 434, 538, 870
NlaIII	CATG	9 cut(s)	27, 388, 397, 452, 514, 548, 620, 633, 1070
NlaIV	GGNNCC	4 cut(s)	6, 88, 234, 900
NmuCI	GTSAC	1 cut(s)	1123
NspI	RCATGY	3 cut(s)	27, 397, 548
PaeI	GCATGC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	32, 934
PkrI	GCNGC	9 cut(s)	151, 250, 337, 607, 721, 808, 811, 892, 1171
PshBI	ATTAAT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	1114
Psp6I	CCWGG	2 cut(s)	564, 1119
PspEI	GGTNACC	1 cut(s)	1123
PspGI	CCWGG	2 cut(s)	564, 1119
PspN4I	GGNNCC	4 cut(s)	6, 88, 234, 900
PspPI	GGNCC	2 cut(s)	162, 562
PstI	CTGCAG	1 cut(s)	811
PstNI	CAGNNNCTG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	2 cut(s)	286, 1140
RsaNI	GTAC	2 cut(s)	285, 1139
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	1114
SaqAI	TTAA	6 cut(s)	156, 294, 360, 750, 1044, 1059
SatI	GCNGC	9 cut(s)	150, 249, 336, 606, 720, 807, 810, 891, 1170
Sau3AI	GATC	5 cut(s)	172, 279, 434, 538, 870
Sau96I	GGNCC	2 cut(s)	162, 562
ScrFI	CCNGG	2 cut(s)	566, 1121
SduI	GDGCHC	3 cut(s)	103, 408, 1114
SfaNI	GCATC	6 cut(s)	317, 354, 610, 706, 877, 1208
SfcI	CTRYAG	2 cut(s)	807, 1077
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	515
SphI	GCATGC	1 cut(s)	548
Sse9I	AATT	7 cut(s)	271, 527, 636, 681, 725, 905, 975
SspMI	CTAG	4 cut(s)	45, 240, 704, 1097
SstI	GAGCTC	1 cut(s)	1114
StyD4I	CCNGG	2 cut(s)	564, 1119
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	5 cut(s)	35, 134, 439, 591, 739
TasI	AATT	7 cut(s)	271, 527, 636, 681, 725, 905, 975
TfiI	GAWTC	2 cut(s)	32, 934
Tru1I	TTAA	6 cut(s)	156, 294, 360, 750, 1044, 1059
Tru9I	TTAA	6 cut(s)	156, 294, 360, 750, 1044, 1059
TscAI	CASTG	5 cut(s)	220, 282, 295, 880, 1111
TseFI	GTSAC	1 cut(s)	1123
TseI	GCWGC	9 cut(s)	149, 248, 335, 605, 719, 806, 809, 890, 1169
Tsp45I	GTSAC	1 cut(s)	1123
TspDTI	ATGAA	4 cut(s)	96, 618, 711, 1011
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	5 cut(s)	220, 282, 295, 880, 1111
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	562
VspI	ATTAAT	1 cut(s)	360
XceI	RCATGY	3 cut(s)	27, 397, 548
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	4 cut(s)	45, 240, 704, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.