AT5G48300

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19570238 .. 19572804
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48300.1

Sequence Viewer

Length: 1563 bp
ATGGCGTCTGTATCTGCAATTGGAGTTCTCAAGGTACCTCCTGCTTCGACTTCCAATTCCACCGGAAAAGCCACGGAGGCGGTTCCCACGAGGACTCTTTCTTTCTCCTCCTCTGTTACTTCATCCGACGACAAGATTTCACTCAAATCCACCGTCTCCCGTCTTTGTAAATCTGTTGTTCGCAGGAATCCGATCATCGTCTCTCCCAAAGCCGTCTCAGATTCTCAAAACTCTCAAACTTGTCTCGATCCTGATGCTAGCAGCAGTGTTTTGGGGATAATCTTAGGAGGTGGAGCTGGAACTCGTCTTTATCCACTTACGAAGAAGAGAGCGAAACCAGCTGTGCCTCTTGGTGCTAACTATAGGCTTATTGATATTCCTGTGAGCAACTGTTTGAATAGCAACATATCCAAGATCTATGTTCTTACTCAGTTCAATTCCGCGTCTTTGAATCGTCATCTTTCACGAGCTTATGCTAGTAACATGGGAGGTTATAAGAATGAAGGATTCGTTGAAGTTCTCGCTGCTCAACAGAGTCCTGAAAACCCCAACTGGTTCCAGGGGACAGCTGATGCCGTCAGGCAATACTTGTGGTTGTTCGAGGAGCATAATGTCTTGGAGTATCTCATTCTTGCTGGGGATCATTTGTATAGAATGGACTATGAGAAGTTTATTCAAGCACATAGGGAGACTGATGCTGATATCACAGTAGCTGCATTACCAATGGACGAGCAACGAGCCACTGCTTTTGGGCTGATGAAGATTGATGAGGAAGGACGTATTATTGAATTTGCTGAAAAACCAAAAGGGGAGCACCTAAAGGCCATGAAGGTTGACACAACAATTCTAGGTCTTGATGATCAGAGAGCCAAGGAGATGCCTTTCATTGCTAGTATGGGTATTTATGTTGTAAGCAGAGATGTAATGCTAGACTTACTACGGAATCAGTTTCCTGGAGCTAATGACTTTGGAAGTGAAGTCATTCCCGGTGCCACTTCCCTTGGACTGAGGGTGCAAGCTTACCTATATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTTTATAACGCTAATCTTGGAATCACCAAGAAACCAGTTCCTGATTTTAGTTTCTATGACCGTTCTGCTCCGATCTACACACAGCCGCGTTATTTACCACCGTCTAAGATGCTTGATGCTGATGTTACTGACAGTGTCATCGGAGAGGGCTGTGTTATCAAGAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATATTTCATAAAGAGCGGAATTGTAACGGTTATCAAAGACGCCTTAATCCCAACCGGCACTGTCATCTGA

Protein Analysis

520

Amino Acids

56.65

Weight (kDa)

6.13

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 92 - 365 2.6e-64 Nucleotidyl transferase
LbH_GLGC PF25247 385 - 519 6.3e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011236)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 495, 1071
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 34, 989
AccBSI CCGCTC 1 cut(s) 1509
AccII CGCG 3 cut(s) 443, 1153, 1355
AciI CCGC 4 cut(s) 80, 441, 1151, 1509
AclWI GGATC 2 cut(s) 242, 648
AcsI RAATTY 2 cut(s) 788, 1236
AcyI GRCGYC 2 cut(s) 5, 1533
AdeI CACNNNGTG 1 cut(s) 1249
AfaI GTAC 3 cut(s) 36, 1054, 1368
AflII CTTAAG 1 cut(s) 1348
AgsI TTSAA 7 cut(s) 397, 436, 451, 515, 677, 788, 1292
AjnI CCWGG 2 cut(s) 558, 952
AluBI AGCT 8 cut(s) 296, 341, 470, 569, 713, 959, 1019, 1313
AluI AGCT 8 cut(s) 296, 341, 470, 569, 713, 959, 1019, 1313
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 7 cut(s) 160, 205, 220, 248, 683, 1319, 1478
AlwI GGATC 2 cut(s) 242, 648
AlwNI CAGNNNCTG 2 cut(s) 713, 1106
AoxI GGCC 2 cut(s) 822, 1404
ApeKI GCWGC 4 cut(s) 261, 524, 713, 1475
ApoI RAATTY 2 cut(s) 788, 1236
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 1304
Asp700I GAANNNNTTC 1 cut(s) 981
Asp718I GGTACC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 1355
AspS9I GGNCC 1 cut(s) 1404
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 2 cut(s) 1081, 1445
AsuNHI GCTAGC 1 cut(s) 257
BaeI ACNNNNGTAYC 2 cut(s) 1411, 1444
BanI GGYRCC 2 cut(s) 34, 989
BauI CACGAG 2 cut(s) 88, 465
BbsI GAAGAC 1 cut(s) 1050
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 4 cut(s) 273, 511, 700, 1487
BccI CCATC 3 cut(s) 1025, 1415, 1484
BceAI ACGGC 2 cut(s) 197, 560
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 560, 954
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 7 cut(s) 160, 205, 220, 248, 683, 1319, 1478
BfaI CTAG 5 cut(s) 258, 477, 848, 891, 929
BfmI CTRYAG 2 cut(s) 361, 1056
BfrI CTTAAG 1 cut(s) 1348
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 414
BisI GCNGC 5 cut(s) 262, 525, 714, 1151, 1476
BlsI GCNGC 5 cut(s) 263, 526, 715, 1152, 1477
Bme1390I CCNGG 3 cut(s) 560, 954, 987
BmgT120I GGNCC 1 cut(s) 1404
BmiI GGNNCC 4 cut(s) 36, 84, 557, 991
BmrFI CCNGG 3 cut(s) 560, 954, 987
BmrI ACTGGG 1 cut(s) 1048
BmsI GCATC 6 cut(s) 244, 562, 685, 867, 1164, 1171
BmtI GCTAGC 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 1048
BpiI GAAGAC 1 cut(s) 1050
BpmI CTGGAG 1 cut(s) 975
BpuEI CTTGAG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 987
BsaAI YACGTR 1 cut(s) 1427
BsaHI GRCGYC 2 cut(s) 5, 1533
BsaJI CCNNGG 4 cut(s) 72, 559, 870, 1000
BsaWI WCCGGW 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 1547
Bse1I ACTGG 3 cut(s) 557, 1043, 1100
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 2 cut(s) 560, 954
BseDI CCNNGG 4 cut(s) 72, 559, 870, 1000
BseGI GGATG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 231, 443, 998
BseNI ACTGG 3 cut(s) 557, 1043, 1100
BseRI GAGGAG 3 cut(s) 97, 100, 617
BseXI GCAGC 4 cut(s) 273, 511, 700, 1487
BseYI CCCAGC 1 cut(s) 635
Bsh1236I CGCG 3 cut(s) 443, 1153, 1355
BshFI GGCC 2 cut(s) 824, 1406
BshNI GGYRCC 2 cut(s) 34, 989
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 3 cut(s) 63, 987, 1548
BslFI GGGAC 1 cut(s) 577
BsmAI GTCTC 7 cut(s) 160, 205, 220, 248, 683, 1319, 1478
BsmBI CGTCTC 3 cut(s) 160, 205, 220
BsmFI GGGAC 1 cut(s) 577
BsnI GGCC 2 cut(s) 824, 1406
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
BspACI CCGC 4 cut(s) 80, 441, 1151, 1509
BspANI GGCC 2 cut(s) 824, 1406
BspCNI CTCAG 3 cut(s) 230, 442, 999
BspFNI CGCG 3 cut(s) 443, 1153, 1355
BspLI GGNNCC 4 cut(s) 36, 84, 557, 991
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 2 cut(s) 242, 648
BspT107I GGYRCC 2 cut(s) 34, 989
BspTI CTTAAG 1 cut(s) 1348
BsrBI CCGCTC 1 cut(s) 1509
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 1547
BsrI ACTGG 3 cut(s) 557, 1043, 1100
BssAI RCCGGY 1 cut(s) 1547
BssECI CCNNGG 4 cut(s) 72, 559, 870, 1000
BssMI GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
BssNI GRCGYC 2 cut(s) 5, 1533
BssSI CACGAG 2 cut(s) 88, 465
BssT1I CCWWGG 2 cut(s) 870, 1000
Bst2BI CACGAG 2 cut(s) 88, 465
Bst2UI CCWGG 2 cut(s) 560, 954
Bst4CI ACNGT 8 cut(s) 154, 392, 709, 1127, 1167, 1199, 1522, 1555
Bst6I CTCTTC 1 cut(s) 320
BstACI GRCGYC 2 cut(s) 5, 1533
BstAFI CTTAAG 1 cut(s) 1348
BstBAI YACGTR 1 cut(s) 1427
BstC8I GCNNGC 2 cut(s) 259, 1017
BstDEI CTNAG 5 cut(s) 217, 283, 429, 1007, 1170
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 3 cut(s) 443, 1153, 1355
BstHHI GCGC 1 cut(s) 1355
BstKTI GATC 7 cut(s) 195, 250, 417, 643, 862, 1140, 1449
BstMAI GTCTC 7 cut(s) 160, 205, 220, 248, 683, 1319, 1478
BstMBI GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
BstMWI GCNNNNNNNGC 3 cut(s) 77, 338, 1350
BstNI CCWGG 2 cut(s) 560, 954
BstSCI CCNGG 3 cut(s) 558, 952, 985
BstSFI CTRYAG 2 cut(s) 361, 1056
BstUI CGCG 3 cut(s) 443, 1153, 1355
BstV1I GCAGC 4 cut(s) 273, 511, 700, 1487
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 1 cut(s) 414
BstYI RGATCY 1 cut(s) 414
BsuRI GGCC 2 cut(s) 824, 1406
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 2 cut(s) 271, 741
BtsIMutI CAGTG 4 cut(s) 271, 741, 1204, 1551
Cac8I GCNNGC 2 cut(s) 259, 1017
CaiI CAGNNNCTG 2 cut(s) 713, 1106
CfoI GCGC 1 cut(s) 1355
Cfr10I RCCGGY 1 cut(s) 1547
Cfr13I GGNCC 1 cut(s) 1404
CseI GACGC 2 cut(s) 432, 1541
Csp6I GTAC 3 cut(s) 35, 1053, 1367
CspCI CAANNNNNGTGG 6 cut(s) 572, 607, 730, 765, 982, 1017
CviAII CATG 2 cut(s) 484, 826
CviQI GTAC 3 cut(s) 35, 1053, 1367
DdeI CTNAG 5 cut(s) 217, 283, 429, 1007, 1170
DpnI GATC 7 cut(s) 194, 249, 416, 642, 861, 1139, 1448
DpnII GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
DraIII CACNNNGTG 1 cut(s) 1249
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 870, 1000
Eco32I GATATC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 558, 952
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 870, 1000
ErhI CCWWGG 2 cut(s) 870, 1000
Esp3I CGTCTC 3 cut(s) 160, 205, 220
FaeI CATG 2 cut(s) 487, 829
FalI AAGNNNNNCTT 2 cut(s) 1331, 1363
FaqI GGGAC 1 cut(s) 577
FatI CATG 2 cut(s) 483, 825
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 262, 525, 714, 1151, 1476
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 5 cut(s) 262, 525, 714, 1151, 1476
FspBI CTAG 5 cut(s) 258, 477, 848, 891, 929
GlaI GCGC 1 cut(s) 1354
GluI GCNGC 5 cut(s) 262, 525, 714, 1151, 1476
GsaI CCCAGC 1 cut(s) 639
GsuI CTGGAG 1 cut(s) 975
HaeIII GGCC 2 cut(s) 824, 1406
HapII CCGG 3 cut(s) 63, 987, 1548
HgaI GACGC 2 cut(s) 432, 1541
HhaI GCGC 1 cut(s) 1355
Hin1I GRCGYC 2 cut(s) 5, 1533
Hin1II CATG 2 cut(s) 487, 829
Hin6I GCGC 1 cut(s) 1353
HinP1I GCGC 1 cut(s) 1353
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 1017
HpaII CCGG 3 cut(s) 63, 987, 1548
HphI GGTGA 2 cut(s) 1081, 1445
Hpy166II GTNNAC 2 cut(s) 835, 1367
Hpy188I TCNGA 8 cut(s) 127, 192, 220, 864, 1137, 1208, 1276, 1562
Hpy188III TCNNGA 8 cut(s) 245, 251, 465, 539, 854, 1106, 1225, 1444
Hpy8I GTNNAC 2 cut(s) 835, 1367
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 497, 767, 823, 1271
HpyCH4III ACNGT 8 cut(s) 154, 392, 709, 1127, 1167, 1199, 1522, 1555
HpyCH4IV ACGT 3 cut(s) 778, 1426, 1464
HpyCH4V TGCA 6 cut(s) 17, 716, 1015, 1233, 1269, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 338, 1350
HpyF3I CTNAG 5 cut(s) 217, 283, 429, 1007, 1170
HpySE526I ACGT 3 cut(s) 778, 1426, 1464
Hsp92I GRCGYC 2 cut(s) 5, 1533
Hsp92II CATG 2 cut(s) 487, 829
HspAI GCGC 1 cut(s) 1353
KpnI GGTACC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
LmnI GCTCC 6 cut(s) 293, 604, 811, 956, 1138, 1310
Lsp1109I GCAGC 4 cut(s) 273, 511, 700, 1487
LweI GCATC 6 cut(s) 244, 562, 685, 867, 1164, 1171
MaeI CTAG 5 cut(s) 258, 477, 848, 891, 929
MaeII ACGT 3 cut(s) 778, 1426, 1464
MaeIII GTNAC 6 cut(s) 115, 479, 1034, 1189, 1433, 1516
MalI GATC 7 cut(s) 194, 249, 416, 642, 861, 1139, 1448
MbiI CCGCTC 1 cut(s) 1509
MboI GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
MboII GAAGA 5 cut(s) 334, 337, 772, 1055, 1304
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 816
MluCI AATT 7 cut(s) 18, 55, 436, 788, 843, 1236, 1512
MlyI GAGTC 3 cut(s) 88, 544, 1251
MmeI TCCRAC 2 cut(s) 150, 1234
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 3 cut(s) 1304, 1349, 1538
MspA1I CMGCKG 2 cut(s) 341, 569
MspCI CTTAAG 1 cut(s) 1348
MspI CCGG 3 cut(s) 63, 987, 1548
MspR9I CCNGG 3 cut(s) 560, 954, 987
MunI CAATTG 1 cut(s) 18
MvaI CCWGG 2 cut(s) 560, 954
MvnI CGCG 3 cut(s) 443, 1153, 1355
MwoI GCNNNNNNNGC 3 cut(s) 77, 338, 1350
NciI CCSGG 1 cut(s) 987
NdeII GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 2 cut(s) 487, 829
NlaIV GGNNCC 4 cut(s) 36, 84, 557, 991
NmuCI GTSAC 1 cut(s) 1433
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 7 cut(s) 187, 221, 451, 507, 943, 1086, 1295
PflFI GACNNNGTC 2 cut(s) 1199, 1439
PfoI TCCNGGA 1 cut(s) 952
PkrI GCNGC 5 cut(s) 263, 526, 715, 1152, 1477
PleI GAGTC 3 cut(s) 88, 543, 1251
PpsI GAGTC 3 cut(s) 88, 543, 1251
Ppu21I YACGTR 1 cut(s) 1427
PshBI ATTAAT 1 cut(s) 1304
PsiI TTATAA 2 cut(s) 495, 1071
Psp6I CCWGG 2 cut(s) 558, 952
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 2 cut(s) 558, 952
PspN4I GGNNCC 4 cut(s) 36, 84, 557, 991
PspPI GGNCC 1 cut(s) 1404
PstNI CAGNNNCTG 2 cut(s) 713, 1106
PsuI RGATCY 1 cut(s) 414
PsyI GACNNNGTC 2 cut(s) 1199, 1439
PvuII CAGCTG 2 cut(s) 341, 569
RsaI GTAC 3 cut(s) 36, 1054, 1368
RsaNI GTAC 3 cut(s) 35, 1053, 1367
SaqAI TTAA 3 cut(s) 1304, 1349, 1538
SatI GCNGC 5 cut(s) 262, 525, 714, 1151, 1476
Sau3AI GATC 7 cut(s) 192, 247, 414, 640, 859, 1137, 1446
Sau96I GGNCC 1 cut(s) 1404
SchI GAGTC 3 cut(s) 88, 544, 1251
ScrFI CCNGG 3 cut(s) 560, 954, 987
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 6 cut(s) 244, 562, 685, 867, 1164, 1171
SfcI CTRYAG 2 cut(s) 361, 1056
SmlI CTYRAG 2 cut(s) 29, 1348
SmoI CTYRAG 2 cut(s) 29, 1348
Sse9I AATT 7 cut(s) 18, 55, 436, 788, 843, 1236, 1512
SsiI CCGC 4 cut(s) 80, 441, 1151, 1509
SspMI CTAG 5 cut(s) 258, 477, 848, 891, 929
StyD4I CCNGG 3 cut(s) 558, 952, 985
StyI CCWWGG 2 cut(s) 870, 1000
TaaI ACNGT 8 cut(s) 154, 392, 709, 1127, 1167, 1199, 1522, 1555
TaiI ACGT 3 cut(s) 781, 1429, 1467
TaqI TCGA 4 cut(s) 47, 246, 600, 1413
TasI AATT 7 cut(s) 18, 55, 436, 788, 843, 1236, 1512
TauI GCSGC 1 cut(s) 1153
TfiI GAWTC 7 cut(s) 187, 221, 451, 507, 943, 1086, 1295
Tru1I TTAA 3 cut(s) 1304, 1349, 1538
Tru9I TTAA 3 cut(s) 1304, 1349, 1538
TscAI CASTG 4 cut(s) 271, 748, 1204, 1558
TseFI GTSAC 1 cut(s) 1433
TseI GCWGC 4 cut(s) 261, 524, 713, 1475
Tsp45I GTSAC 1 cut(s) 1433
TspDTI ATGAA 7 cut(s) 111, 516, 773, 842, 874, 1229, 1489
TspGWI ACGGA 4 cut(s) 89, 955, 1250, 1349
TspRI CASTG 4 cut(s) 271, 748, 1204, 1558
Tth111I GACNNNGTC 2 cut(s) 1199, 1439
Vha464I CTTAAG 1 cut(s) 1348
VspI ATTAAT 1 cut(s) 1304
XapI RAATTY 2 cut(s) 788, 1236
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 5 cut(s) 258, 477, 848, 891, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.