Rorug02G0446300

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008528
Physical Location & Seq
Reverse (-)
57289608 .. 57292432
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0446300.1

Sequence Viewer

Length: 666 bp
ATGTCCAGGTTTCGAGCACTGTTGCAAGCAACCAAGAAAGCTCTCACATGGAATGTCGAAGACCTGGTGCCTCCCAGTGAGAGATATATATTTAATTTCGGTTCAAAGGAAGAGCTGAAGAAGTGGCATTTATATTCTGATTCTGAATATGGAGGGTTGTCCTCAGCATCTTTAGAGATATCAGATACTGGAAATGGACTCAATGGAATTTTCTCGGGTAACCTTTCTTCTGATTTTGCTGAGGGTTCAAAGTGGAAGATGAACAGGAGTGGCTTTTGTGGAATGCGGTCCAAAAAGTTTAATGGCTTCATTGATTTGGATGCATATGATACCATATCACTAAAAGTTAAAGGAGACGGAAGATCCTACATATCCACGATTTATACAGAAAACTGGGTAAATTCCCCTGGACAAGACGAAGATAATTCATGGCAGGCTTTTCTTTTTGTACCAAAAGACAACTGGTACATTGCAAAGATCCCTCTTTCTCGTTATCTACCAACATGGAGAGGGAGTGTTATAGACGCAGAGATGGAAATGAATCCTGCCCGCGTTGTTGGTATGTCTCTCTCAGTGAATGCAGAAGGTGGTGTCCCGGGTGCTAGATCTGGTCCGGGTGATTTCAAGCTTGAAATTGATTGGATAAAGGCTTTAAGAACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

221

Amino Acids

24.75

Weight (kDa)

5.63

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIA30 PF08547 31 - 212 1.7e-43 Complex I intermediate-associated protein 30 (CIA30)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 286, 550
AclWI GGATC 2 cut(s) 357, 472
AcsI RAATTY 2 cut(s) 207, 400
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 2 cut(s) 450, 467
AgsI TTSAA 4 cut(s) 105, 249, 625, 632
AjnI CCWGG 3 cut(s) 5, 63, 406
AluBI AGCT 3 cut(s) 41, 115, 628
AluI AGCT 3 cut(s) 41, 115, 628
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 348, 570
AlwI GGATC 2 cut(s) 357, 472
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 2 cut(s) 214, 595
ApoI RAATTY 2 cut(s) 207, 400
AspS9I GGNCC 2 cut(s) 288, 611
AsuC2I CCSGG 3 cut(s) 596, 597, 615
AsuHPI GGTGA 1 cut(s) 629
AvaI CYCGRG 2 cut(s) 214, 595
AvaII GGWCC 2 cut(s) 288, 611
BanI GGYRCC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 19
BbvCI CCTCAGC 2 cut(s) 163, 240
BccI CCATC 1 cut(s) 526
BciT130I CCWGG 3 cut(s) 7, 65, 408
BcnI CCSGG 3 cut(s) 596, 597, 615
BcoDI GTCTC 2 cut(s) 348, 570
BfaI CTAG 1 cut(s) 603
BglII AGATCT 1 cut(s) 605
Bme1390I CCNGG 6 cut(s) 7, 65, 408, 596, 597, 615
Bme18I GGWCC 2 cut(s) 288, 611
BmeT110I CYCGRG 2 cut(s) 214, 595
BmgT120I GGNCC 2 cut(s) 288, 611
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 6 cut(s) 7, 65, 408, 596, 597, 615
BmrI ACTGGG 2 cut(s) 69, 403
BmsI GCATC 2 cut(s) 176, 310
BmuI ACTGGG 2 cut(s) 69, 403
BpiI GAAGAC 1 cut(s) 66
Bpu10I CCTNAGC 2 cut(s) 163, 240
BpuMI CCSGG 3 cut(s) 596, 597, 615
BsaJI CCNNGG 2 cut(s) 406, 595
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bse1I ACTGG 4 cut(s) 75, 193, 398, 467
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 3 cut(s) 7, 65, 408
BseDI CCNNGG 2 cut(s) 406, 595
BseGI GGATG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 3 cut(s) 177, 231, 585
BseNI ACTGG 4 cut(s) 75, 193, 398, 467
Bsh1236I CGCG 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 214, 595
BsiSI CCGG 2 cut(s) 596, 614
BslFI GGGAC 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 348, 570
BsmBI CGTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 578
BsmI GAATGC 2 cut(s) 288, 583
BsoBI CYCGRG 2 cut(s) 214, 595
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 362, 477, 605
BspACI CCGC 2 cut(s) 286, 550
BspCNI CTCAG 3 cut(s) 176, 232, 584
BspFNI CGCG 1 cut(s) 552
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 357, 472
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 4 cut(s) 75, 193, 398, 467
BssECI CCNNGG 2 cut(s) 406, 595
BssMI GATC 3 cut(s) 362, 477, 605
Bst2UI CCWGG 3 cut(s) 7, 65, 408
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 27, 435, 550
BstDEI CTNAG 3 cut(s) 163, 240, 571
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 3 cut(s) 365, 480, 608
BstMAI GTCTC 2 cut(s) 348, 570
BstMBI GATC 3 cut(s) 362, 477, 605
BstNI CCWGG 3 cut(s) 7, 65, 408
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 6 cut(s) 5, 63, 406, 594, 595, 613
BstUI CGCG 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 3 cut(s) 362, 477, 605
BstYI RGATCY 3 cut(s) 362, 477, 605
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 17, 82, 579
Cac8I GCNNGC 3 cut(s) 27, 435, 550
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 288, 611
Cfr9I CCCGGG 1 cut(s) 595
CseI GACGC 1 cut(s) 533
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 449, 466
CviAII CATG 3 cut(s) 48, 429, 504
CviJI RGCY 7 cut(s) 41, 115, 273, 306, 437, 628, 650
CviKI_1 RGCY 7 cut(s) 41, 115, 273, 306, 437, 628, 650
CviQI GTAC 2 cut(s) 449, 466
DdeI CTNAG 3 cut(s) 163, 240, 571
DpnI GATC 3 cut(s) 364, 479, 607
DpnII GATC 3 cut(s) 362, 477, 605
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 288, 611
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 2 cut(s) 214, 595
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 5, 63, 406
EcoRV GATATC 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 3 cut(s) 51, 432, 507
FaqI GGGAC 1 cut(s) 578
FatI CATG 3 cut(s) 47, 428, 503
FauI CCCGC 1 cut(s) 557
FauNDI CATATG 1 cut(s) 325
FokI GGATG 1 cut(s) 332
FspBI CTAG 1 cut(s) 603
HapII CCGG 2 cut(s) 596, 614
HgaI GACGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 51, 432, 507
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 3 cut(s) 140, 198, 541
HpaII CCGG 2 cut(s) 596, 614
HphI GGTGA 1 cut(s) 629
Hpy188I TCNGA 4 cut(s) 139, 145, 184, 232
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 4 cut(s) 25, 323, 473, 581
HpyF3I CTNAG 3 cut(s) 163, 240, 571
Hsp92II CATG 3 cut(s) 51, 432, 507
Kzo9I GATC 3 cut(s) 362, 477, 605
LguI GCTCTTC 1 cut(s) 105
LweI GCATC 2 cut(s) 176, 310
MabI ACCWGGT 1 cut(s) 63
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 364, 479, 607
MboI GATC 3 cut(s) 362, 477, 605
MboII GAAGA 7 cut(s) 71, 122, 130, 219, 268, 372, 431
MflI RGATCY 3 cut(s) 362, 477, 605
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 5 cut(s) 94, 207, 400, 424, 633
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 6 cut(s) 81, 146, 172, 235, 492, 503
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 4 cut(s) 93, 300, 348, 653
MspI CCGG 2 cut(s) 596, 614
MspR9I CCNGG 6 cut(s) 7, 65, 408, 596, 597, 615
Mva1269I GAATGC 2 cut(s) 288, 583
MvaI CCWGG 3 cut(s) 7, 65, 408
MvnI CGCG 1 cut(s) 552
NciI CCSGG 3 cut(s) 596, 597, 615
NdeI CATATG 1 cut(s) 325
NdeII GATC 3 cut(s) 362, 477, 605
NlaIII CATG 3 cut(s) 51, 432, 507
NlaIV GGNNCC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 288, 583
PfeI GAWTC 2 cut(s) 140, 541
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp6I CCWGG 3 cut(s) 5, 63, 406
PspEI GGTNACC 1 cut(s) 218
PspGI CCWGG 3 cut(s) 5, 63, 406
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 288, 611
PstNI CAGNNNCTG 1 cut(s) 188
PsuI RGATCY 3 cut(s) 362, 477, 605
RsaI GTAC 2 cut(s) 450, 467
RsaNI GTAC 2 cut(s) 449, 466
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 4 cut(s) 93, 300, 348, 653
Sau3AI GATC 3 cut(s) 362, 477, 605
Sau96I GGNCC 2 cut(s) 288, 611
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 6 cut(s) 7, 65, 408, 596, 597, 615
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 11, 43, 66, 117, 225, 589, 630
SexAI ACCWGGT 1 cut(s) 63
SfaNI GCATC 2 cut(s) 176, 310
SinI GGWCC 2 cut(s) 288, 611
SmaI CCCGGG 1 cut(s) 597
Sse9I AATT 5 cut(s) 94, 207, 400, 424, 633
SsiI CCGC 2 cut(s) 286, 550
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 6 cut(s) 5, 63, 406, 594, 595, 613
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 13, 57
TasI AATT 5 cut(s) 94, 207, 400, 424, 633
TfiI GAWTC 2 cut(s) 140, 541
Tru1I TTAA 4 cut(s) 93, 300, 348, 653
Tru9I TTAA 4 cut(s) 93, 300, 348, 653
TscAI CASTG 3 cut(s) 24, 82, 579
TspDTI ATGAA 4 cut(s) 275, 298, 417, 554
TspGWI ACGGA 1 cut(s) 372
TspMI CCCGGG 1 cut(s) 595
TspRI CASTG 3 cut(s) 24, 82, 579
VpaK11BI GGWCC 2 cut(s) 288, 611
XapI RAATTY 2 cut(s) 207, 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XmaI CCCGGG 1 cut(s) 595
XspI CTAG 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.