Rw2G042130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008528
Physical Location & Seq
Reverse (-)
68384893 .. 68386636
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042130.1

Sequence Viewer

Length: 714 bp
ATGGAGGTAGGTCCAAAGGTAGTGCTTCTGTTGAGAGACCCAGAGGGCTTCGGCCAAGCCATCTCCGACGCGTTCCACCCTAACCCAACTGCTTCCGTCACAGAGGAAAGCTTCGAGCTTTCGCTGGAGCGCTATGGGATCCGAAATTGCAAAGCTTCTGGAAAAGTTCGTCACTTTCTTGATCAGCACGGTCAATATGAGGTGTCAGTGTTGCTTATGGAATATTATGAATCACCGATACTAGCATGTGCTTTTAATGAAGTTCTGGCTGAACTAGCAGGACAAAAATCATCCTCAATGCCCACCATTGTTGCCCCCTTTTTCGTTGCATCATCCAAGCTTAAATGGGACAGTAAATCTGCAACAAAGTTTGACAGCAAAGGTTCACTTTATGGTATACAGATAGGTCCAGAAACAGACATAAGCAAGGCCATCATTGCCAGAACCCAGAAAGCACCACCGTCATTACAGATTCATCATGAACCTCTAGCCTGCCTTCTTCAGTTGGTCCGTGTCCTGAATTTGCCAACTCTTGTTCTTATAGGGCAAAGGGGTCAGCGAATTTCTGATAAAGAAGAGCTTGAGATACTTTATGAAATTGGGGAACTTTTGGCAAACACTTGTAAGGTAAACTTCTCAAGAGGCAAAATCACATGGAAGCCAACAAAAAAATCGAAGGATGAACAGGAGCCATGGCGTGCATTGTATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.41

Weight (kDa)

6.97

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7894 PF25428 1 - 237 1.3e-110 Domain of unknown function (DUF7894)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 397
AccII CGCG 1 cut(s) 71
AclWI GGATC 2 cut(s) 133, 146
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 520, 561
AcuI CTGAAG 1 cut(s) 485
AfeI AGCGCT 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 69
AluBI AGCT 5 cut(s) 111, 118, 155, 340, 580
AluI AGCT 5 cut(s) 111, 118, 155, 340, 580
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 133, 146
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 2 cut(s) 52, 429
ApoI RAATTY 2 cut(s) 520, 561
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 11, 407, 508
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 3 cut(s) 11, 407, 508
BamHI GGATCC 1 cut(s) 138
BccI CCATC 2 cut(s) 68, 440
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 242, 275, 488
BfoI RGCGCY 1 cut(s) 133
Bme18I GGWCC 3 cut(s) 11, 407, 508
BmgT120I GGNCC 3 cut(s) 11, 407, 508
BmiI GGNNCC 2 cut(s) 140, 690
BmsI GCATC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 602, 622
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 692
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 3 cut(s) 290, 332, 685
BseMI GCAATG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 54, 431
BslFI GGGAC 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 54, 431
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 138, 181
Bsp19I CCATGG 1 cut(s) 692
BspANI GGCC 2 cut(s) 54, 431
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 140, 690
BspPI GGATC 2 cut(s) 133, 146
BspQI GCTCTTC 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 2 cut(s) 138, 181
BssNAI GTATAC 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 692
Bst1107I GTATAC 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 191, 353, 462
Bst6I CTCTTC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 493, 699
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 3 cut(s) 290, 332, 685
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 141, 184
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 138, 181
BstMWI GCNNNNNNNGC 2 cut(s) 275, 437
BstNSI RCATGY 1 cut(s) 249
BstUI CGCG 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 398
BsuRI GGCC 2 cut(s) 54, 431
BtgI CCRYGG 1 cut(s) 692
BtsCI GGATG 3 cut(s) 290, 332, 685
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 493, 699
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 11, 407, 508
CseI GACGC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 4 cut(s) 246, 479, 654, 693
DpnI GATC 2 cut(s) 140, 183
DpnII GATC 2 cut(s) 138, 181
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco130I CCWWGG 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 11, 407, 508
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 692
FaeI CATG 4 cut(s) 249, 482, 657, 696
FalI AAGNNNNNCTT 6 cut(s) 372, 404, 564, 596, 617, 649
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 245, 478, 653, 692
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 397
FokI GGATG 3 cut(s) 277, 319, 692
FspBI CTAG 3 cut(s) 242, 275, 488
GlaI GCGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 54, 431
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 132
Hin1II CATG 4 cut(s) 249, 482, 657, 696
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 3 cut(s) 109, 153, 338
HinfI GANTC 2 cut(s) 230, 472
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 3 cut(s) 386, 398, 631
Hpy188I TCNGA 3 cut(s) 67, 143, 568
Hpy188III TCNNGA 6 cut(s) 159, 179, 410, 479, 517, 639
Hpy8I GTNNAC 3 cut(s) 386, 398, 631
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 506, 670
HpyCH4III ACNGT 3 cut(s) 191, 353, 462
HpyCH4V TGCA 4 cut(s) 150, 329, 362, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 437
Hsp92II CATG 4 cut(s) 249, 482, 657, 696
HspAI GCGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 138, 181
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 127, 688
LweI GCATC 1 cut(s) 338
MaeI CTAG 3 cut(s) 242, 275, 488
MaeIII GTNAC 2 cut(s) 97, 170
MalI GATC 2 cut(s) 140, 183
MboI GATC 2 cut(s) 138, 181
MboII GAAGA 2 cut(s) 491, 587
MflI RGATCY 1 cut(s) 138
MluCI AATT 4 cut(s) 145, 520, 561, 597
MluI ACGCGT 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 6 cut(s) 37, 97, 193, 304, 495, 635
MseI TTAA 3 cut(s) 255, 342, 712
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 275, 437
NcoI CCATGG 1 cut(s) 692
NdeII GATC 2 cut(s) 138, 181
NlaIII CATG 4 cut(s) 249, 482, 657, 696
NlaIV GGNNCC 2 cut(s) 140, 690
NmuCI GTSAC 2 cut(s) 97, 170
NspI RCATGY 1 cut(s) 249
PagI TCATGA 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 230, 472
PspN4I GGNNCC 2 cut(s) 140, 690
PspPI GGNCC 3 cut(s) 11, 407, 508
PsuI RGATCY 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 255, 342, 712
Sau3AI GATC 2 cut(s) 138, 181
Sau96I GGNCC 3 cut(s) 11, 407, 508
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 3 cut(s) 11, 407, 508
SmlI CTYRAG 2 cut(s) 581, 637
SmoI CTYRAG 2 cut(s) 581, 637
Sse9I AATT 4 cut(s) 145, 520, 561, 597
SspI AATATT 1 cut(s) 224
SspMI CTAG 3 cut(s) 242, 275, 488
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 3 cut(s) 191, 353, 462
TaqI TCGA 2 cut(s) 114, 674
TasI AATT 4 cut(s) 145, 520, 561, 597
TfiI GAWTC 2 cut(s) 230, 472
Tru1I TTAA 3 cut(s) 255, 342, 712
Tru9I TTAA 3 cut(s) 255, 342, 712
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 97, 170
Tsp45I GTSAC 2 cut(s) 97, 170
TspDTI ATGAA 6 cut(s) 243, 273, 464, 495, 609, 696
TspGWI ACGGA 2 cut(s) 85, 500
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 3 cut(s) 11, 407, 508
XapI RAATTY 2 cut(s) 520, 561
XceI RCATGY 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 3 cut(s) 242, 275, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.