Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008528

Physical Location & Seq

Genomic Coordinates Reverse (-)

20470976 .. 20473190

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G192700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGTAGGTTCGAAGGTAGTGTTTCTGTTGAGAGACTCAGATGGCTTCGGCGACGCCATCTCAGGTGCTTTCCACCCTAAGCCAAGCAATACCACCATAGAGGAAAGTTTCGAGCTTTCATTGGAGCACTATGGGATCAAAAATTGCAAAGCGTCTGGAAGCATTCGTCACTTCCTCGATCACCAGGGTCAATATGAGGTGTCTGTGTTGCTTATGCAATATCATGAACCACCAATACTTGCATGCGCAGTTAATGAAGTTCTAGCTCAAATAGCAGGGAAAAAATCATCCTCAATTCCCACAATTGTTGCCCCATTTGTCGTAGCATCATCTAAGCTTAAGTTGGAAAGTAAATCTGCAACAAAATTTGAAGGCAAAGTTTCGCTTTATGGTACAGAGATAGGGTCAGAAACAGCCATAAGCAAGGCCATGGCAACCAGAACCCAGAAGCCACCACCAACGATGCAGATTCATCATGAACCTTTAGCTTGCTTTCTTCAGTTGGCCCGTGTTTTGAAGTTGCCCACTTATGTTCTTATAGGGGAAAGAGGTCTGCGCATTTCTGATAAAGAAGAGCTTGAGATACTTTATGAGATAGGAGAACTCTTGGCAAGCACTTTGAACCTCTACTTTTCAAGAGATAAAATCACATGGAATCCAACACGGAAAACAAAGGACAATAAGGAGCCATGGCGCGCGTTATATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

8.63

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07640
fragaria_vesca	FvH4_6g40230
malus_domestica	MD17G1121200.v1.1 MD17G1122600.v1.1
prunus_persica	Prupe.3G192700_v2.0.a1 Prupe.3G192700_v2.0.a1 Prupe.3G192700_v2.0.a1
pyrus_communis	pycom17g11160 pycom17g11210 pycom17g11290 pycom17g11320 pycom17g11390 pycom17g11430
rosa_chinensis	RchiOBHm_Chr2g0155251
rosa_laevigata	RLG00000020830
rosa_multiflora	Rmu_sc0012066.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093830
rosa_rugosa	Rorug02G0446300
rosa_samantha	Rh2AG512800 Rh2BG523400 Rh2CG497800 Rh2DG533100
rosa_wichuraiana	Rw2G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	250, 560
AccII	CGCG	2 cut(s)	699, 701
AclWI	GGATC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	397
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	374, 520, 625, 639
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	5 cut(s)	118, 269, 340, 491, 580
AluI	AGCT	5 cut(s)	118, 269, 340, 491, 580
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	429, 507
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	4 cut(s)	251, 561, 699, 701
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	2 cut(s)	38, 68
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	266
BfrI	CTTAAG	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	338, 456
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	187, 432, 692
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	187, 432, 692
BseGI	GGATG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	54, 78
BsePI	GCGCGC	1 cut(s)	697
Bsh1236I	CGCG	2 cut(s)	699, 701
BshFI	GGCC	2 cut(s)	431, 509
BsiHKAI	GWGCWC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	431, 509
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	138, 181
Bsp19I	CCATGG	2 cut(s)	432, 692
BspANI	GGCC	2 cut(s)	431, 509
BspCNI	CTCAG	2 cut(s)	53, 77
BspFNI	CGCG	2 cut(s)	699, 701
BspHI	TCATGA	2 cut(s)	226, 478
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	570
BspT104I	TTCGAA	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	187, 432, 692
BssHII	GCGCGC	1 cut(s)	697
BssMI	GATC	2 cut(s)	138, 181
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	432, 692
Bst2UI	CCWGG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	247, 493, 616, 699
BstDEI	CTNAG	4 cut(s)	40, 64, 81, 336
BstDSI	CCRYGG	2 cut(s)	432, 692
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	2 cut(s)	699, 701
BstHHI	GCGC	4 cut(s)	251, 561, 699, 701
BstKTI	GATC	2 cut(s)	141, 184
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	138, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	2 cut(s)	699, 701
BsuRI	GGCC	2 cut(s)	431, 509
BtgI	CCRYGG	2 cut(s)	432, 692
BtsCI	GGATG	1 cut(s)	290
Cac8I	GCNNGC	4 cut(s)	247, 493, 616, 699
CciI	TCATGA	2 cut(s)	226, 478
CfoI	GCGC	4 cut(s)	251, 561, 699, 701
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	2 cut(s)	65, 144
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	6 cut(s)	227, 246, 433, 479, 654, 693
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	4 cut(s)	40, 64, 81, 336
DpnI	GATC	2 cut(s)	140, 183
DpnII	GATC	2 cut(s)	138, 181
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	432, 692
Eco57I	CTGAAG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	432, 692
ErhI	CCWWGG	2 cut(s)	432, 692
FaeI	CATG	6 cut(s)	230, 249, 436, 482, 657, 696
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 564, 596
FatI	CATG	6 cut(s)	226, 245, 432, 478, 653, 692
FokI	GGATG	1 cut(s)	277
FspBI	CTAG	1 cut(s)	266
FspI	TGCGCA	2 cut(s)	250, 560
GlaI	GCGC	4 cut(s)	250, 560, 698, 700
HaeIII	GGCC	2 cut(s)	431, 509
HgaI	GACGC	2 cut(s)	65, 144
HhaI	GCGC	4 cut(s)	251, 561, 699, 701
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	230, 249, 436, 482, 657, 696
Hin6I	GCGC	4 cut(s)	249, 559, 697, 699
HinP1I	GCGC	4 cut(s)	249, 559, 697, 699
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	3 cut(s)	38, 472, 658
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	43, 412, 568
Hpy188III	TCNNGA	4 cut(s)	159, 227, 479, 639
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	10, 368
HpyCH4V	TGCA	5 cut(s)	150, 220, 245, 362, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	4 cut(s)	40, 64, 81, 336
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	230, 249, 436, 482, 657, 696
HspAI	GCGC	4 cut(s)	249, 559, 697, 699
Kzo9I	GATC	2 cut(s)	138, 181
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	2 cut(s)	127, 688
LpnPI	CCDG	7 cut(s)	51, 144, 173, 200, 264, 454, 461
LweI	GCATC	2 cut(s)	338, 456
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	140, 183
MboI	GATC	2 cut(s)	138, 181
MboII	GAAGA	2 cut(s)	491, 587
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	145, 297, 306, 368
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	327, 686
MnlI	CCTC	6 cut(s)	97, 188, 193, 304, 545, 638
MseI	TTAA	3 cut(s)	255, 342, 712
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	2 cut(s)	699, 701
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	2 cut(s)	432, 692
NdeII	GATC	2 cut(s)	138, 181
NlaIII	CATG	6 cut(s)	230, 249, 436, 482, 657, 696
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	2 cut(s)	250, 560
NspI	RCATGY	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	249
PagI	TCATGA	2 cut(s)	226, 478
PauI	GCGCGC	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	570
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	472, 658
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	508
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PteI	GCGCGC	1 cut(s)	697
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	255, 342, 712
Sau3AI	GATC	2 cut(s)	138, 181
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	338, 456
SfuI	TTCGAA	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	341, 581
SmoI	CTYRAG	2 cut(s)	341, 581
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	145, 297, 306, 368
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	432, 692
TaqI	TCGA	3 cut(s)	14, 114, 180
TasI	AATT	4 cut(s)	145, 297, 306, 368
TfiI	GAWTC	2 cut(s)	472, 658
Tru1I	TTAA	3 cut(s)	255, 342, 712
Tru9I	TTAA	3 cut(s)	255, 342, 712
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	6 cut(s)	17, 111, 243, 273, 464, 495
TspGWI	ACGGA	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	249
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.