Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008528

Physical Location & Seq

Genomic Coordinates Forward (+)

9028481 .. 9030235

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGTCCGTTCGAAGGTAGTGTTTCTGCTGAGAGACTCAGAGGGCTTCGGCGAAGCCATCTCAGCTGCTTTCCGCCGAAATCCAAGCAATTCTACTGTAGAAGAAAGTTTCGAGCTTTCATTGGAGCGCTATGGAATCCAAAATTGCAAAGCTTCTGGAATCCTTCACCACTTCCTCGATCCCCAGGGCCAATATGAGGTGTCTGTGCTGCTTATGGAATACTATGAACCGCCAATACTAGCCTGCGCTATTAATGAAGTTCTAGCGCAATTAGCAGGGCGGAATTCATCCTCAGTTCCTACAGTCGTTGCCCCATTTTTCCTAGAGTCATCCAAGCTAAAGGGGGAAAGTAAATCTGCAACAAAATTTGAAAGCAAATGTTCACTTTATGGTATAGGGATTGGTTCAGAAACAGCCATAAGCAAGGCTATGGCAAGCAAAACCCAGAAGCCACCGCCATCCTTGCAGATTCATCATGAACCTTTGGCTTGCTTTCTTCAGTTGGCCCGTGTTTTGAAGTTGCCAACATATGTTCTTATCGGGCAAAGAGGTCAACGCATTTCTGATAAAGAAGAGTTTCAGATACTTTATGAGATTGGAGAACTTTTAGCAAGCACTTTGAACCTTTCCTTTTCAAGAGACAAGATCACATGGAATCCAACAAGAAAATCAAAAGACGATGGGGAGCCATGGCGTGCATTATATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.36

Weight (kDa)

8.27

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07640
fragaria_vesca	FvH4_6g40230
malus_domestica	MD17G1121200.v1.1 MD17G1122600.v1.1
prunus_persica	Prupe.3G192700_v2.0.a1 Prupe.3G192700_v2.0.a1 Prupe.3G192700_v2.0.a1
pyrus_communis	pycom17g11160 pycom17g11210 pycom17g11290 pycom17g11320 pycom17g11390 pycom17g11430
rosa_chinensis	RchiOBHm_Chr2g0155251
rosa_laevigata	RLG00000020830
rosa_multiflora	Rmu_sc0012066.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093830
rosa_rugosa	Rorug02G0446300
rosa_samantha	Rh2AG512800 Rh2BG523400 Rh2CG497800 Rh2DG533100
rosa_wichuraiana	Rw2G042130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	76, 233, 283, 458
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	286, 368
AcuI	CTGAAG	1 cut(s)	485
AfeI	AGCGCT	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	16, 199
AgsI	TTSAA	4 cut(s)	374, 520, 625, 639
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	68, 118, 155, 340
AluI	AGCT	4 cut(s)	68, 118, 155, 340
Alw26I	GTCTC	2 cut(s)	30, 636
AlwI	GGATC	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	131
AoxI	GGCC	2 cut(s)	190, 507
ApeKI	GCWGC	2 cut(s)	68, 211
ApoI	RAATTY	2 cut(s)	286, 368
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	3 cut(s)	132, 251, 271
AspS9I	GGNCC	3 cut(s)	7, 190, 508
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	55, 198
BccI	CCATC	3 cut(s)	68, 469, 677
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	30, 636
BfaI	CTAG	3 cut(s)	242, 266, 326
BfmI	CTRYAG	2 cut(s)	99, 303
BfoI	RGCGCY	1 cut(s)	133
BisI	GCNGC	2 cut(s)	69, 212
BlsI	GCNGC	2 cut(s)	70, 213
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 190, 508
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	186, 187, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 199
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	186, 187, 692
BseGI	GGATG	3 cut(s)	290, 332, 461
BseLI	CCNNNNNNNGG	2 cut(s)	16, 199
BseMII	CTCAG	4 cut(s)	23, 54, 78, 309
BseXI	GCAGC	2 cut(s)	55, 198
BshFI	GGCC	2 cut(s)	192, 509
BslI	CCNNNNNNNGG	2 cut(s)	16, 199
BsmAI	GTCTC	2 cut(s)	30, 636
BsnI	GGCC	2 cut(s)	192, 509
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	181, 648
Bsp19I	CCATGG	1 cut(s)	692
BspACI	CCGC	4 cut(s)	76, 233, 283, 458
BspANI	GGCC	2 cut(s)	192, 509
BspCNI	CTCAG	4 cut(s)	24, 53, 77, 308
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	186, 187, 692
BssMI	GATC	2 cut(s)	181, 648
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	100, 307
Bst6I	CTCTTC	1 cut(s)	570
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	247, 439, 493, 616, 699
BstDEI	CTNAG	4 cut(s)	32, 40, 64, 295
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	3 cut(s)	290, 332, 461
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	3 cut(s)	132, 251, 271
BstKTI	GATC	2 cut(s)	184, 651
BstMAI	GTCTC	2 cut(s)	30, 636
BstMBI	GATC	2 cut(s)	181, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 275, 466
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	99, 303
BstV1I	GCAGC	2 cut(s)	55, 198
BsuRI	GGCC	2 cut(s)	192, 509
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	3 cut(s)	290, 332, 461
Cac8I	GCNNGC	5 cut(s)	247, 439, 493, 616, 699
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	3 cut(s)	132, 251, 271
Cfr13I	GGNCC	3 cut(s)	7, 190, 508
CviAII	CATG	3 cut(s)	479, 654, 693
DdeI	CTNAG	4 cut(s)	32, 40, 64, 295
DpnI	GATC	2 cut(s)	183, 650
DpnII	GATC	2 cut(s)	181, 648
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	2 cut(s)	65, 298
Eco130I	CCWWGG	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	3 cut(s)	482, 657, 696
FatI	CATG	3 cut(s)	478, 653, 692
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	2 cut(s)	69, 212
FokI	GGATG	3 cut(s)	277, 319, 448
Fsp4HI	GCNGC	2 cut(s)	69, 212
FspBI	CTAG	3 cut(s)	242, 266, 326
GlaI	GCGC	3 cut(s)	131, 250, 270
GluI	GCNGC	2 cut(s)	69, 212
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	192, 509
HhaI	GCGC	3 cut(s)	132, 251, 271
Hin1II	CATG	3 cut(s)	482, 657, 696
Hin6I	GCGC	3 cut(s)	130, 249, 269
HinP1I	GCGC	3 cut(s)	130, 249, 269
HincII	GTYRAC	1 cut(s)	557
HindII	GTYRAC	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	6 cut(s)	38, 138, 162, 329, 472, 658
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	386, 557
Hpy188I	TCNGA	4 cut(s)	43, 412, 568, 585
Hpy188III	TCNNGA	3 cut(s)	159, 479, 639
Hpy8I	GTNNAC	2 cut(s)	386, 557
HpyAV	CCTTC	2 cut(s)	10, 176
HpyCH4III	ACNGT	2 cut(s)	100, 307
HpyCH4V	TGCA	4 cut(s)	150, 362, 469, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 275, 466
HpyF3I	CTNAG	4 cut(s)	32, 40, 64, 295
Hsp92II	CATG	3 cut(s)	482, 657, 696
HspAI	GCGC	3 cut(s)	130, 249, 269
Kzo9I	GATC	2 cut(s)	181, 648
LmnI	GCTCC	2 cut(s)	127, 688
LpnPI	CCDG	6 cut(s)	144, 173, 200, 259, 264, 461
Lsp1109I	GCAGC	2 cut(s)	55, 198
MaeI	CTAG	3 cut(s)	242, 266, 326
MalI	GATC	2 cut(s)	183, 650
MboI	GATC	2 cut(s)	181, 648
MboII	GAAGA	3 cut(s)	116, 491, 587
MluCI	AATT	5 cut(s)	91, 145, 272, 286, 368
MlyI	GAGTC	2 cut(s)	32, 338
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	5 cut(s)	37, 188, 193, 304, 545
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	65, 275, 466
NcoI	CCATGG	1 cut(s)	692
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	181, 648
NlaIII	CATG	3 cut(s)	482, 657, 696
NlaIV	GGNNCC	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	1 cut(s)	478
PasI	CCCWGGG	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	138, 162, 472, 658
PkrI	GCNGC	2 cut(s)	70, 213
PleI	GAGTC	2 cut(s)	32, 337
PpsI	GAGTC	2 cut(s)	32, 337
PshBI	ATTAAT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	3 cut(s)	7, 190, 508
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	69, 212
Sau3AI	GATC	2 cut(s)	181, 648
Sau96I	GGNCC	3 cut(s)	7, 190, 508
SchI	GAGTC	2 cut(s)	32, 338
ScrFI	CCNGG	1 cut(s)	188
SfcI	CTRYAG	2 cut(s)	99, 303
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	5 cut(s)	91, 145, 272, 286, 368
SsiI	CCGC	4 cut(s)	76, 233, 283, 458
SspMI	CTAG	3 cut(s)	242, 266, 326
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	100, 307
TaqI	TCGA	3 cut(s)	14, 114, 180
TasI	AATT	5 cut(s)	91, 145, 272, 286, 368
TfiI	GAWTC	4 cut(s)	138, 162, 472, 658
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	2 cut(s)	68, 211
TspDTI	ATGAA	7 cut(s)	17, 111, 243, 273, 279, 464, 495
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	2 cut(s)	286, 368
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	3 cut(s)	242, 266, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.