AT3G07640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008528
Physical Location & Seq
Forward (+)
2438015 .. 2439938
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07640.1

Sequence Viewer

Length: 726 bp
ATGAAAGTAGCGGAGAAGATTGTTTTCCTCTGGAATGATTCCGATGGATTTGCTGCAACCATTTCTGATACTTTAAACCCTAGCCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATCCAGCTTCCGTTGGATAAGTATGGCGTTGAAGGTGTGGAAACCGGCGGGAGTATCGTTCATTTCGTAGATGAAAATGAAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGTTATGAGCCTCCAGTACTAGTGTGTGCTATGAATGAACTGCTGGACCTAATTACAAGGGGATCGTCAACTCTACCCACAATCATAGCTCCTTTCTTTGTGGCGGCATCTAAGCTCAAGTTCAATAACAGATCCCTGGAAGCAAATAACAGAAAAGCTAGTCTTCATTACGTTCAAGTTGCTACAGAAACAGAGACCAGTAGGTTATTTGCTTCTCGCATCGAGAAACCACCACTATCGATGCAGATCCATTATGAACCTTTGTCATGCTTGCTTCATCTAGCTCGTGTTAAACGCCTGCCTACCGCTATTCTCATAGGCCAAAGAAGCAATAGCCTAACTCATAAAGCTCTAGACGAAGAGCTTCAGGTGATCCATGAAACAGGGGAGCTCGTGGCTAGTTGGACAGGACTGTCTTTCTCAAGAGACAGAATCAAGTGGAGCGCATCAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTCTTTATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.03

Weight (kDa)

6.1

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7894 PF25428 1 - 241 2e-96 Domain of unknown function (DUF7894)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 640
AciI CCGC 4 cut(s) 11, 165, 332, 534
AclWI GGATC 5 cut(s) 112, 298, 354, 469, 595
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 246
AgsI TTSAA 3 cut(s) 149, 352, 404
AhlI ACTAGT 1 cut(s) 247
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 8 cut(s) 124, 317, 343, 386, 512, 578, 592, 619
AluI AGCT 8 cut(s) 124, 317, 343, 386, 512, 578, 592, 619
Alw21I GWGCWC 2 cut(s) 621, 715
Alw26I GTCTC 3 cut(s) 214, 416, 648
AlwI GGATC 5 cut(s) 112, 298, 354, 469, 595
AoxI GGCC 1 cut(s) 547
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 226
AvaII GGWCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 621
BauI CACGAG 2 cut(s) 513, 620
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 621, 715
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 214, 416, 648
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 8 cut(s) 81, 87, 107, 248, 387, 509, 581, 627
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 2 cut(s) 54, 333
BlsI GCNGC 2 cut(s) 55, 334
BmcAI AGTACT 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 4 cut(s) 344, 456, 459, 683
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 329, 634
Bsa29I ATCGAT 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 473
BsaI GGTCTC 2 cut(s) 214, 416
BsaJI CCNNGG 2 cut(s) 363, 704
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 242, 426
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 1 cut(s) 365
BseCI ATCGAT 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 363, 704
BseJI GATNNNNATC 1 cut(s) 473
BseNI ACTGG 2 cut(s) 242, 426
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 549
BshVI ATCGAT 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 621, 715
BsiSI CCGG 1 cut(s) 162
BsmAI GTCTC 3 cut(s) 214, 416, 648
BsnI GGCC 1 cut(s) 549
Bso31I GGTCTC 2 cut(s) 214, 416
Bsp119I TTCGAA 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 621, 715
Bsp143I GATC 5 cut(s) 117, 290, 359, 474, 600
BspACI CCGC 4 cut(s) 11, 165, 332, 534
BspANI GGCC 1 cut(s) 549
BspDI ATCGAT 1 cut(s) 467
BspPI GGATC 5 cut(s) 112, 298, 354, 469, 595
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 226
BspTNI GGTCTC 2 cut(s) 214, 416
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 242, 426
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 363, 704
BssMI GATC 5 cut(s) 117, 290, 359, 474, 600
BssSI CACGAG 2 cut(s) 513, 620
Bst2BI CACGAG 2 cut(s) 513, 620
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 642
Bst6I CTCTTC 2 cut(s) 102, 582
BstBI TTCGAA 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 500, 527, 711
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 704
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 5 cut(s) 120, 293, 362, 477, 603
BstMAI GTCTC 3 cut(s) 214, 416, 648
BstMBI GATC 5 cut(s) 117, 290, 359, 474, 600
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 3 cut(s) 117, 359, 474
BstYI RGATCY 3 cut(s) 117, 359, 474
Bsu15I ATCGAT 1 cut(s) 467
BsuRI GGCC 1 cut(s) 549
BsuTUI ATCGAT 1 cut(s) 467
BtgI CCRYGG 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 500, 527, 711
CfoI GCGC 1 cut(s) 674
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 467
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 495, 605
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 339
DpnI GATC 5 cut(s) 119, 292, 361, 476, 602
DpnII GATC 5 cut(s) 117, 290, 359, 474, 600
DraI TTTAAA 1 cut(s) 75
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
Eam1104I CTCTTC 2 cut(s) 102, 582
EarI CTCTTC 2 cut(s) 102, 582
Ecl136II GAGCTC 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 214, 416
Eco47I GGWCC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 619
Eco57I CTGAAG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 621
FaeI CATG 2 cut(s) 498, 608
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 2 cut(s) 494, 604
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 2 cut(s) 54, 333
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 2 cut(s) 54, 333
FspBI CTAG 8 cut(s) 81, 87, 107, 248, 387, 509, 581, 627
GlaI GCGC 1 cut(s) 673
GluI GCNGC 2 cut(s) 54, 333
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 162
HhaI GCGC 1 cut(s) 674
Hin1II CATG 2 cut(s) 498, 608
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 38, 660
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 2 cut(s) 43, 67
Hpy188III TCNNGA 5 cut(s) 31, 211, 451, 581, 651
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 642
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 56, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 498, 608
HspAI GCGC 1 cut(s) 672
Kzo9I GATC 5 cut(s) 117, 290, 359, 474, 600
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 322, 616, 669
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 4 cut(s) 344, 456, 459, 683
MaeI CTAG 8 cut(s) 81, 87, 107, 248, 387, 509, 581, 627
MaeII ACGT 1 cut(s) 399
MalI GATC 5 cut(s) 119, 292, 361, 476, 602
MboI GATC 5 cut(s) 117, 290, 359, 474, 600
MboII GAAGA 9 cut(s) 28, 89, 122, 212, 215, 383, 599, 704, 707
MflI RGATCY 3 cut(s) 117, 359, 474
MhlI GDGCHC 2 cut(s) 621, 715
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 111, 611
MnlI CCTC 3 cut(s) 38, 105, 249
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 74, 519
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 555
NdeII GATC 5 cut(s) 117, 290, 359, 474, 600
NlaIII CATG 2 cut(s) 498, 608
NspV TTCGAA 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 38, 660
PkrI GCNGC 2 cut(s) 55, 334
Psp124BI GAGCTC 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 3 cut(s) 117, 359, 474
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 2 cut(s) 74, 519
SatI GCNGC 2 cut(s) 54, 333
Sau3AI GATC 5 cut(s) 117, 290, 359, 474, 600
Sau96I GGNCC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 2 cut(s) 621, 715
SfaNI GCATC 4 cut(s) 344, 456, 459, 683
SfcI CTRYAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 226
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 344, 649
SmoI CTYRAG 2 cut(s) 344, 649
SpeI ACTAGT 1 cut(s) 247
Sse9I AATT 1 cut(s) 279
SsiI CCGC 4 cut(s) 11, 165, 332, 534
SspMI CTAG 8 cut(s) 81, 87, 107, 248, 387, 509, 581, 627
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 642
TaiI ACGT 1 cut(s) 402
TaqI TCGA 4 cut(s) 212, 226, 450, 467
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 244
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 2 cut(s) 38, 660
Tru1I TTAA 2 cut(s) 74, 519
Tru9I TTAA 2 cut(s) 74, 519
TseI GCWGC 1 cut(s) 53
TspGWI ACGGA 2 cut(s) 117, 693
VpaK11BI GGWCC 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 580
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 8 cut(s) 81, 87, 107, 248, 387, 509, 581, 627
ZrmI AGTACT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.