Rroxscaffold_2G00093830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008528
Physical Location & Seq
Forward (+)
15173772 .. 15176105
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093830.1

Sequence Viewer

Length: 684 bp
ATGGAGGTAGGTCCAAAGGTAGTGCTTCTGTTGACAGACCCAGAGGGCTTCGGCCAAGCCATCTCCGACGCATTCCACCCTAACCCAACTGCTTCCGTCACAGAGGAAAGCTTCGAGCTTTCGCTGGAGCGCTATGGGATCCGAAATTGCAAAGCTTCTGGAAAAGTTCGTCACTTTCTTGATCAGCATGGTCAATATGAGGTGTCAGTGTTGCTTATGGAATATTATGAATCACCGATACTAGCATGTGCTTTTAATGAAGTTCTGGCTCAACTAACAGGACAAAAATCATCCTCAATGCCCGCCATTCTTAAATGGGACAGTAAATCTGCAACAAAGTTTGACAGCAAGGGTTCACTTTATGGTATACAGATAGGTCCAGAAACAGACATCAGCAAGGCCATCATTGCCAGAACCCAGAAAGCACCACCGTCATTACAGATTCATCATGAACCTCTAGCCTGCCTTCTTCAGTTGGCCCGTGCCCTTAATTTGCCAACTCTTGTTCTTATAGGGCAAAGGGGTCAGCGAATTTCTGATAAAGAAGAGCTTGAGATACTTTATGAAATTGTGGAACTTTTGGCAAACACTTGTAAGGTAAACTTCTCAAGAGGCAAAATCACATGGAAGCCAACAAAAAAATCGAAGGATGAACAGGAGCCATGGCGTGCATTGTATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

6.53

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7894 PF25428 1 - 227 1.3e-95 Domain of unknown function (DUF7894)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 367
AciI CCGC 1 cut(s) 303
AclWI GGATC 2 cut(s) 133, 146
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 455
AfeI AGCGCT 1 cut(s) 131
AluBI AGCT 4 cut(s) 111, 118, 155, 550
AluI AGCT 4 cut(s) 111, 118, 155, 550
AlwI GGATC 2 cut(s) 133, 146
Aor51HI AGCGCT 1 cut(s) 131
AoxI GGCC 3 cut(s) 52, 399, 477
ApoI RAATTY 1 cut(s) 531
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 11, 377, 478
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 11, 377
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 1 cut(s) 138
BccI CCATC 2 cut(s) 68, 410
BclI TGATCA 1 cut(s) 181
BfaI CTAG 2 cut(s) 242, 458
BfoI RGCGCY 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 11, 377
BmgT120I GGNCC 3 cut(s) 11, 377, 478
BmiI GGNNCC 2 cut(s) 140, 660
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 572, 592
BsaJI CCNNGG 1 cut(s) 662
Bse3DI GCAATG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 2 cut(s) 290, 655
BseMI GCAATG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 487
BshFI GGCC 3 cut(s) 54, 401, 479
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 3 cut(s) 54, 401, 479
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 2 cut(s) 138, 181
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 1 cut(s) 303
BspANI GGCC 3 cut(s) 54, 401, 479
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 140, 660
BspPI GGATC 2 cut(s) 133, 146
BspQI GCTCTTC 1 cut(s) 540
BsrDI GCAATG 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 2 cut(s) 138, 181
BssNAI GTATAC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 662
Bst1107I GTATAC 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 323, 432
Bst6I CTCTTC 1 cut(s) 540
BstC8I GCNNGC 3 cut(s) 303, 463, 669
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 2 cut(s) 290, 655
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 141, 184
BstMBI GATC 2 cut(s) 138, 181
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 368
BsuRI GGCC 3 cut(s) 54, 401, 479
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 2 cut(s) 290, 655
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 303, 463, 669
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 11, 377, 478
CseI GACGC 1 cut(s) 77
CviAII CATG 5 cut(s) 188, 246, 449, 624, 663
DpnI GATC 2 cut(s) 140, 183
DpnII GATC 2 cut(s) 138, 181
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 11, 377
Eco47III AGCGCT 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 5 cut(s) 191, 249, 452, 627, 666
FalI AAGNNNNNCTT 4 cut(s) 534, 566, 587, 619
FaqI GGGAC 1 cut(s) 332
FatI CATG 5 cut(s) 187, 245, 448, 623, 662
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 367
FokI GGATG 2 cut(s) 277, 662
FspBI CTAG 2 cut(s) 242, 458
GlaI GCGC 1 cut(s) 131
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 3 cut(s) 54, 401, 479
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 132
Hin1II CATG 5 cut(s) 191, 249, 452, 627, 666
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 2 cut(s) 109, 153
HinfI GANTC 2 cut(s) 230, 442
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 4 cut(s) 33, 356, 368, 601
Hpy188I TCNGA 3 cut(s) 67, 143, 538
Hpy188III TCNNGA 5 cut(s) 159, 179, 380, 449, 609
Hpy8I GTNNAC 4 cut(s) 33, 356, 368, 601
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 476, 640
HpyCH4III ACNGT 2 cut(s) 323, 432
HpyCH4V TGCA 3 cut(s) 150, 332, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
Hsp92II CATG 5 cut(s) 191, 249, 452, 627, 666
HspAI GCGC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 138, 181
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 127, 658
MaeI CTAG 2 cut(s) 242, 458
MaeIII GTNAC 2 cut(s) 97, 170
MalI GATC 2 cut(s) 140, 183
MboI GATC 2 cut(s) 138, 181
MboII GAAGA 2 cut(s) 461, 557
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 4 cut(s) 145, 490, 531, 567
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 6 cut(s) 37, 97, 193, 304, 465, 605
MseI TTAA 4 cut(s) 255, 312, 489, 682
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 407
NcoI CCATGG 1 cut(s) 662
NdeII GATC 2 cut(s) 138, 181
NlaIII CATG 5 cut(s) 191, 249, 452, 627, 666
NlaIV GGNNCC 2 cut(s) 140, 660
NmuCI GTSAC 2 cut(s) 97, 170
NspI RCATGY 1 cut(s) 249
PagI TCATGA 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 540
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 230, 442
PspN4I GGNNCC 2 cut(s) 140, 660
PspPI GGNCC 3 cut(s) 11, 377, 478
PsuI RGATCY 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 255, 312, 489, 682
Sau3AI GATC 2 cut(s) 138, 181
Sau96I GGNCC 3 cut(s) 11, 377, 478
SduI GDGCHC 1 cut(s) 487
SinI GGWCC 2 cut(s) 11, 377
SmlI CTYRAG 2 cut(s) 551, 607
SmoI CTYRAG 2 cut(s) 551, 607
Sse9I AATT 4 cut(s) 145, 490, 531, 567
SsiI CCGC 1 cut(s) 303
SspI AATATT 1 cut(s) 224
SspMI CTAG 2 cut(s) 242, 458
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 2 cut(s) 323, 432
TaqI TCGA 2 cut(s) 114, 644
TasI AATT 4 cut(s) 145, 490, 531, 567
TfiI GAWTC 2 cut(s) 230, 442
Tru1I TTAA 4 cut(s) 255, 312, 489, 682
Tru9I TTAA 4 cut(s) 255, 312, 489, 682
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 97, 170
Tsp45I GTSAC 2 cut(s) 97, 170
TspDTI ATGAA 6 cut(s) 243, 273, 434, 465, 579, 666
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 11, 377
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 2 cut(s) 242, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.